Wall clock time and date at job start Mon Mar 30 2020 01:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36565 * 125.06604 * 2 1 4 4 C 1.34455 * 109.97634 * 180.02562 * 3 2 1 5 5 C 1.46255 * 107.03427 * 0.02562 * 4 3 2 6 6 C 1.39911 * 133.83874 * 180.02562 * 5 4 3 7 7 C 1.36195 * 119.96366 * 179.97438 * 6 5 4 8 8 C 1.40240 * 120.37544 * 359.97438 * 7 6 5 9 9 C 1.47578 * 119.83115 * 180.02562 * 8 7 6 10 10 O 1.21593 * 119.99995 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00056 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27917 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.50697 * 109.47491 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99965 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00490 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00172 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99620 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46847 * 90.00413 * 18 16 14 20 20 H 1.48502 * 109.46888 * 210.00098 * 18 16 14 21 21 H 1.48496 * 109.47530 * 329.99981 * 18 16 14 22 22 C 1.39287 * 120.33542 * 0.29055 * 8 7 6 23 23 C 1.37817 * 125.07557 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46864 * 89.97472 * 1 2 3 25 25 H 1.08996 * 109.46543 * 209.96830 * 1 2 3 26 26 H 1.08997 * 109.47198 * 329.97359 * 1 2 3 27 27 H 1.07995 * 125.01499 * 0.04476 * 3 2 1 28 28 H 1.08002 * 126.48440 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.01533 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.81294 * 179.97438 * 7 6 5 31 31 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 32 32 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 33 33 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 34 34 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 35 35 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 36 36 H 0.96998 * 120.00373 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.16222 * 179.71163 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.1178 0.0000 4 6 3.5478 0.7677 -0.0006 5 6 3.5974 -0.6940 -0.0016 6 6 4.6389 -1.6282 -0.0020 7 6 4.3573 -2.9608 -0.0025 8 6 3.0270 -3.4045 -0.0020 9 6 2.7356 -4.8512 -0.0019 10 8 1.5833 -5.2393 -0.0010 11 7 3.7468 -5.7423 -0.0029 12 6 3.4575 -7.1784 -0.0090 13 6 4.7709 -7.9631 -0.0158 14 6 4.4735 -9.4404 -0.0215 15 1 3.4499 -9.7852 -0.0199 16 6 5.5079 -10.3520 -0.0286 17 7 5.2482 -11.6412 -0.0341 18 14 7.2781 -9.7557 -0.0321 19 1 7.7518 -9.6036 1.3671 20 1 8.1319 -10.7439 -0.7390 21 1 7.3580 -8.4458 -0.7270 22 6 1.9793 -2.4867 -0.0071 23 6 2.2570 -1.1279 -0.0005 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3632 -0.8903 0.5133 26 1 -0.3633 0.8897 0.5142 27 1 1.8817 2.1331 0.0007 28 1 4.3939 1.4390 -0.0011 29 1 5.6655 -1.2929 -0.0020 30 1 5.1632 -3.6798 -0.0033 31 1 4.6661 -5.4326 -0.0040 32 1 2.8842 -7.4373 0.8812 33 1 2.8800 -7.4290 -0.8988 34 1 5.3443 -7.7042 -0.9060 35 1 5.3486 -7.7126 0.8739 36 1 5.9759 -12.2825 -0.0388 37 1 0.9558 -2.8315 -0.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601429438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:07 Heat of formation + Delta-G solvation = -1.654438 kcal Electronic energy + Delta-G solvation = -19411.159514 eV Core-core repulsion = 16345.811050 eV Total energy + Delta-G solvation = -3065.348464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31845 -40.77317 -37.75682 -36.70026 -34.82404 -33.82444 -32.27328 -31.33795 -30.12410 -27.16457 -26.93289 -24.31062 -23.20445 -22.60214 -21.56574 -21.00084 -19.00968 -18.67746 -17.74339 -17.14428 -16.82431 -16.58110 -16.22542 -16.20300 -15.46201 -14.99577 -14.98409 -14.83847 -14.56328 -14.35021 -13.88912 -13.74580 -13.37604 -13.21026 -13.05351 -12.79311 -12.24528 -12.23844 -12.13110 -11.98205 -11.75311 -11.52261 -11.03262 -10.78424 -10.69679 -10.12865 -9.24183 -8.61881 -8.29675 -6.37203 -0.26214 0.46550 1.40253 1.43026 1.54398 1.58285 1.82612 2.04500 2.25678 2.37865 2.93970 3.05370 3.62163 3.77965 3.87639 3.97160 4.12907 4.25549 4.33475 4.41046 4.41351 4.51796 4.65922 4.69626 4.72929 4.74350 5.00346 5.01782 5.11074 5.31253 5.39034 5.40182 5.48130 5.62669 5.73029 5.77335 6.14756 6.22116 6.37708 6.55931 6.70771 7.19206 7.27435 8.87173 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037716 B = 0.003295 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.202560 B = 8494.727245 C = 9211.159144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.489 5.489 3 C 0.071 3.929 4 C -0.226 4.226 5 C -0.101 4.101 6 C -0.078 4.078 7 C -0.117 4.117 8 C -0.135 4.135 9 C 0.552 3.448 10 O -0.592 6.592 11 N -0.709 5.709 12 C 0.144 3.856 13 C -0.013 4.013 14 C -0.540 4.540 15 H 0.028 0.972 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.959 3.041 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.236 1.236 22 C -0.070 4.070 23 C 0.058 3.942 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.212 0.788 28 H 0.172 0.828 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.413 0.587 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.268 0.732 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 32.555 0.119 32.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.172 5.172 3 C -0.055 4.055 4 C -0.250 4.250 5 C -0.107 4.107 6 C -0.096 4.096 7 C -0.137 4.137 8 C -0.140 4.140 9 C 0.341 3.659 10 O -0.474 6.474 11 N -0.360 5.360 12 C 0.020 3.980 13 C -0.050 4.050 14 C -0.578 4.578 15 H 0.047 0.953 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.781 3.219 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.158 1.158 22 C -0.091 4.091 23 C -0.048 4.048 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.229 0.771 28 H 0.190 0.810 29 H 0.175 0.825 30 H 0.163 0.837 31 H 0.251 0.749 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.845 32.107 0.117 32.233 hybrid contribution 0.488 -0.863 0.002 0.991 sum -2.357 31.244 0.120 31.333 Atomic orbital electron populations 1.22237 0.75247 1.05565 1.04163 1.44160 1.07289 1.03854 1.61851 1.22615 0.90149 0.92223 1.00558 1.22075 0.97540 0.91644 1.13743 1.19875 0.91856 0.95412 1.03546 1.20490 0.99485 0.90972 0.98651 1.20944 0.94384 0.97047 1.01336 1.19418 0.95039 0.90681 1.08840 1.18667 0.84618 0.86986 0.75580 1.90718 1.22260 1.81707 1.52750 1.45959 1.09953 1.06386 1.73710 1.21089 0.98590 0.78155 1.00129 1.19659 0.93773 0.93390 0.98226 1.21244 0.93712 0.91228 1.51655 0.95317 1.26091 1.05023 0.94603 0.93604 1.70073 1.34443 1.02635 1.51951 0.85534 0.77396 0.79555 0.79390 1.18903 1.21216 1.15841 1.20016 0.99127 0.89507 1.00462 1.18188 0.91588 0.88160 1.06892 0.90272 0.90746 0.86656 0.77131 0.81029 0.82514 0.83658 0.74901 0.93600 0.93619 0.94320 0.94456 0.92297 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 11.02 127.77 1.41 2.09 16 2 N -0.49 -8.12 3.18 -539.42 -1.71 -9.83 16 3 C 0.07 0.84 11.28 83.09 0.94 1.78 16 4 C -0.23 -3.35 11.08 23.49 0.26 -3.08 16 5 C -0.10 -2.16 6.37 -20.14 -0.13 -2.29 16 6 C -0.08 -1.55 10.03 22.20 0.22 -1.32 16 7 C -0.12 -2.71 9.46 22.28 0.21 -2.50 16 8 C -0.14 -4.01 5.87 -20.07 -0.12 -4.13 16 9 C 0.55 20.25 7.76 86.71 0.67 20.92 16 10 O -0.59 -26.44 16.31 -4.01 -0.07 -26.50 16 11 N -0.71 -24.63 5.50 -466.23 -2.57 -27.20 16 12 C 0.14 6.18 5.61 86.38 0.48 6.67 16 13 C -0.01 -0.58 4.16 29.85 0.12 -0.46 16 14 C -0.54 -31.37 9.66 25.60 0.25 -31.12 16 15 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 16 C 0.00 0.22 5.47 84.66 0.46 0.69 16 17 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 18 Si 0.96 42.67 27.47 68.60 1.88 44.55 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 22 C -0.07 -1.97 9.49 22.63 0.21 -1.75 16 23 C 0.06 1.36 6.80 38.96 0.26 1.63 16 24 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.89 8.10 -2.39 -0.02 0.87 16 26 H 0.12 0.41 8.13 -2.39 -0.02 0.39 16 27 H 0.21 0.55 8.06 -2.91 -0.02 0.52 16 28 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 29 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 30 H 0.15 2.68 6.36 -2.91 -0.02 2.66 16 31 H 0.41 11.37 6.46 -92.71 -0.60 10.78 16 32 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.65 7.20 -2.38 -0.02 1.64 16 35 H 0.04 1.57 7.57 -2.39 -0.02 1.56 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.12 3.51 7.62 -2.91 -0.02 3.49 16 Total: -1.00 -78.96 317.58 3.53 -75.43 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.43 Total: 16.07 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.26 Total: -12.89 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.98 Total: -96.66 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.50 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -78.96 3.53 -75.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601429438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.775 kcal (2) G-P(sol) polarization free energy of solvation -78.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds