Wall clock time and date at job start Mon Mar 30 2020 01:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09009 * 109.47087 * 305.00139 * 3 2 1 5 5 C 1.52999 * 109.47249 * 185.00357 * 3 2 1 6 6 C 1.47198 * 109.47100 * 174.99906 * 5 3 2 7 7 N 4.86387 * 126.40224 * 355.02355 * 2 1 3 8 8 N 1.46494 * 109.47109 * 64.99842 * 3 2 1 9 9 C 1.34776 * 120.00009 * 274.99992 * 8 3 2 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 3 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 3 12 12 C 1.39235 * 120.28378 * 356.68142 * 11 9 8 13 13 C 1.38213 * 120.09167 * 180.28304 * 12 11 9 14 14 C 1.38829 * 120.67951 * 359.69388 * 13 12 11 15 15 C 1.37601 * 120.56944 * 0.02562 * 14 13 12 16 16 C 1.40712 * 119.87956 * 0.02562 * 15 14 13 17 17 C 1.40885 * 120.32562 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99856 * 145.79790 * 17 16 15 19 19 C 1.40272 * 120.00496 * 325.79403 * 17 16 15 20 20 N 1.30635 * 119.99551 * 340.74470 * 19 17 16 21 21 Si 1.86797 * 120.00515 * 160.74210 * 19 17 16 22 22 H 1.48493 * 109.47173 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.46948 * 300.00647 * 21 19 17 24 24 H 1.48501 * 109.46992 * 60.00287 * 21 19 17 25 25 H 1.08999 * 109.47159 * 60.00136 * 1 2 3 26 26 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47216 * 299.99680 * 1 2 3 28 28 H 1.09003 * 109.46845 * 239.99815 * 2 1 3 29 29 H 1.08996 * 109.47317 * 120.00360 * 2 1 3 30 30 H 1.08998 * 109.46854 * 294.99713 * 5 3 2 31 31 H 1.08998 * 109.47345 * 54.99583 * 5 3 2 32 32 H 0.96994 * 119.99831 * 95.00064 * 8 3 2 33 33 H 1.07999 * 119.94930 * 359.97438 * 12 11 9 34 34 H 1.08002 * 119.66077 * 179.72069 * 13 12 11 35 35 H 1.08002 * 119.72114 * 180.02562 * 14 13 12 36 36 H 1.08002 * 120.06118 * 180.02562 * 15 14 13 37 37 H 0.97003 * 120.00071 * 354.83697 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5648 1.4443 -0.1258 6 6 4.0455 2.8304 -0.2465 7 7 4.4165 3.9000 -0.3396 8 7 1.6524 2.0974 1.2517 9 6 0.4351 2.6643 1.3669 10 8 -0.3417 2.6318 0.4318 11 6 0.0453 3.3240 2.6265 12 6 0.9024 3.3050 3.7235 13 6 0.5305 3.9197 4.9043 14 6 -0.6932 4.5666 5.0112 15 6 -1.5590 4.6072 3.9426 16 6 -1.2049 3.9884 2.7295 17 6 -2.0845 4.0237 1.6295 18 1 -1.6912 4.0793 0.6251 19 6 -3.4710 3.9867 1.8386 20 7 -3.9489 3.5496 2.9731 21 14 -4.6341 4.5624 0.4951 22 1 -6.0369 4.4236 0.9618 23 1 -4.3571 5.9863 0.1772 24 1 -4.4327 3.7354 -0.7218 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.0029 0.9836 0.7595 31 1 3.8570 0.8800 -1.0114 32 1 2.2719 2.1231 1.9977 33 1 1.8571 2.8050 3.6532 34 1 1.1989 3.8968 5.7523 35 1 -0.9679 5.0422 5.9411 36 1 -2.5088 5.1132 4.0347 37 1 -3.3505 3.1810 3.6417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601445552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:48 Heat of formation + Delta-G solvation = -6.452924 kcal Electronic energy + Delta-G solvation = -20688.057851 eV Core-core repulsion = 17622.501309 eV Total energy + Delta-G solvation = -3065.556542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.49659 -37.62621 -36.58786 -35.22971 -33.98166 -32.01086 -30.53031 -29.75004 -29.19337 -25.36530 -24.38625 -22.60760 -21.15535 -20.51911 -19.64551 -18.12413 -17.54871 -16.40521 -16.13354 -14.93712 -14.68061 -14.36389 -14.20665 -13.99191 -13.85917 -13.52733 -13.05389 -12.92283 -12.53881 -12.51994 -12.18126 -12.00241 -11.85750 -11.48390 -11.15855 -11.13704 -10.93348 -10.89888 -10.73686 -10.54909 -10.37594 -10.15471 -9.62382 -9.08645 -8.57247 -8.37557 -7.80245 -7.61596 -7.15464 -4.47387 2.22671 2.72870 2.75685 2.78873 3.19796 3.30082 3.40008 3.77171 3.92204 4.02823 4.05647 4.62223 4.71847 5.02670 5.18150 5.32135 5.39728 5.47188 5.62143 5.81303 5.88046 6.03320 6.08723 6.16984 6.23570 6.43512 6.51707 6.70196 6.88107 6.97742 7.05445 7.26721 7.48094 7.56709 7.59344 7.71095 7.87574 8.06888 8.19739 8.32244 8.71842 8.84735 9.32923 10.03228 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.006597 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.210079 B = 4243.471342 C = 5094.732212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.152 3.848 4 H 0.093 0.907 5 C -0.034 4.034 6 C 0.205 3.795 7 N -0.432 5.432 8 N -0.747 5.747 9 C 0.567 3.433 10 O -0.528 6.528 11 C -0.267 4.267 12 C -0.043 4.043 13 C -0.260 4.260 14 C -0.076 4.076 15 C -0.201 4.201 16 C 0.121 3.879 17 C -0.465 4.465 18 H 0.106 0.894 19 C 0.032 3.968 20 N -0.793 5.793 21 Si 1.069 2.931 22 H -0.275 1.275 23 H -0.275 1.275 24 H -0.272 1.272 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.391 0.609 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.026 -7.441 -3.226 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.045 3.955 4 H 0.111 0.889 5 C -0.075 4.075 6 C -0.113 4.113 7 N -0.109 5.109 8 N -0.402 5.402 9 C 0.362 3.638 10 O -0.406 6.406 11 C -0.271 4.271 12 C -0.062 4.062 13 C -0.279 4.279 14 C -0.095 4.095 15 C -0.220 4.220 16 C 0.117 3.883 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.190 4.190 20 N -0.417 5.417 21 Si 0.892 3.108 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.198 1.198 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.225 0.775 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.376 -5.624 -4.368 10.252 hybrid contribution 1.953 -0.712 1.072 2.338 sum 9.328 -6.336 -3.296 11.748 Atomic orbital electron populations 1.21801 0.94106 1.00202 1.04271 1.21925 0.97966 0.95049 1.01726 1.20820 0.90253 0.94508 0.89954 0.88930 1.19680 0.96459 0.85358 1.05956 1.29065 0.93493 0.95209 0.93574 1.81222 1.09232 1.11935 1.08517 1.46114 1.18084 1.60791 1.15217 1.18267 0.80052 0.77150 0.88376 1.90691 1.50151 1.59250 1.40533 1.19397 1.01181 1.12655 0.93911 1.20707 0.96101 0.96229 0.93186 1.20240 0.98915 1.11017 0.97729 1.20744 0.94160 0.97576 0.96985 1.21259 1.00584 1.05369 0.94784 1.17496 0.91053 0.87683 0.92100 1.21165 0.92424 1.38845 0.96778 0.87659 1.27240 0.98431 0.93081 1.00222 1.70392 1.41970 1.23434 1.05853 0.83579 0.75231 0.77514 0.74486 1.19943 1.20016 1.19756 0.92141 0.94082 0.91284 0.91468 0.91816 0.87106 0.86160 0.77486 0.89221 0.88961 0.88922 0.87578 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.51 37.16 0.32 -1.92 16 2 C -0.13 -1.40 5.61 -26.73 -0.15 -1.55 16 3 C 0.15 1.85 2.23 -67.94 -0.15 1.70 16 4 H 0.09 1.35 7.58 -51.92 -0.39 0.96 16 5 C -0.03 -0.27 5.25 -29.52 -0.16 -0.43 16 6 C 0.20 2.56 15.14 -20.76 -0.31 2.25 16 7 N -0.43 -6.97 18.54 42.15 0.78 -6.18 16 8 N -0.75 -11.71 4.68 -54.88 -0.26 -11.96 16 9 C 0.57 12.16 6.30 -12.52 -0.08 12.08 16 10 O -0.53 -12.74 10.69 5.27 0.06 -12.68 16 11 C -0.27 -6.28 5.92 -104.36 -0.62 -6.90 16 12 C -0.04 -0.90 9.53 -39.22 -0.37 -1.27 16 13 C -0.26 -5.41 10.03 -39.37 -0.39 -5.81 16 14 C -0.08 -1.67 10.01 -39.60 -0.40 -2.07 16 15 C -0.20 -4.98 7.87 -38.88 -0.31 -5.28 16 16 C 0.12 3.17 5.17 -106.54 -0.55 2.62 16 17 C -0.47 -12.54 7.65 -37.82 -0.29 -12.83 16 18 H 0.11 2.96 5.92 -52.48 -0.31 2.65 16 19 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 20 N -0.79 -21.00 12.57 55.56 0.70 -20.30 16 21 Si 1.07 22.38 29.98 -169.99 -5.10 17.29 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 26 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.07 1.32 5.64 -51.93 -0.29 1.03 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.39 5.35 6.64 -40.82 -0.27 5.08 16 33 H 0.09 1.52 6.41 -52.49 -0.34 1.18 16 34 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 36 H 0.11 2.69 6.94 -52.49 -0.36 2.33 16 37 H 0.30 8.07 6.55 -40.82 -0.27 7.80 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -31.26 312.40 -7.06 -38.32 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.40 Total: 9.50 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.55 Total: -18.68 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 1.22 Total: -38.45 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.06 Total: -12.68 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.10 Total: 17.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.26 -7.06 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.867 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds