Wall clock time and date at job start Mon Mar 30 2020 01:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 H 1.08995 * 109.47082 * 54.99967 * 3 2 1 5 5 C 1.53004 * 109.47119 * 175.00437 * 3 2 1 6 6 C 1.47205 * 109.46841 * 184.99929 * 5 3 2 7 7 N 4.86396 * 126.40103 * 4.97172 * 2 1 3 8 8 N 1.46503 * 109.46778 * 294.99927 * 3 2 1 9 9 C 1.34775 * 119.99575 * 85.00200 * 8 3 2 10 10 O 1.21606 * 120.00622 * 0.02562 * 9 8 3 11 11 C 1.47437 * 119.99602 * 179.97438 * 9 8 3 12 12 C 1.39221 * 120.28570 * 354.93680 * 11 9 8 13 13 C 1.38218 * 120.09565 * 180.29336 * 12 11 9 14 14 C 1.38837 * 120.67113 * 359.44622 * 13 12 11 15 15 C 1.37594 * 120.57199 * 0.55540 * 14 13 12 16 16 C 1.40705 * 119.88018 * 359.72736 * 15 14 13 17 17 C 1.40891 * 120.32960 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00670 * 141.30218 * 17 16 15 19 19 C 1.40277 * 119.99818 * 321.30239 * 17 16 15 20 20 N 1.30626 * 120.00045 * 174.55041 * 19 17 16 21 21 Si 1.86805 * 119.99763 * 354.55314 * 19 17 16 22 22 H 1.48504 * 109.46827 * 89.16758 * 21 19 17 23 23 H 1.48498 * 109.46941 * 209.16198 * 21 19 17 24 24 H 1.48497 * 109.47347 * 329.16692 * 21 19 17 25 25 H 1.08997 * 109.47574 * 59.99996 * 1 2 3 26 26 H 1.08997 * 109.47053 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47167 * 299.99696 * 1 2 3 28 28 H 1.09001 * 109.47167 * 240.00304 * 2 1 3 29 29 H 1.09001 * 109.47763 * 119.99514 * 2 1 3 30 30 H 1.09000 * 109.46527 * 304.99838 * 5 3 2 31 31 H 1.09004 * 109.47066 * 64.99785 * 5 3 2 32 32 H 0.97001 * 120.00462 * 264.99906 * 8 3 2 33 33 H 1.07999 * 119.95309 * 0.02562 * 12 11 9 34 34 H 1.07993 * 119.66660 * 179.70415 * 13 12 11 35 35 H 1.08002 * 119.71098 * 180.30166 * 14 13 12 36 36 H 1.08000 * 120.06090 * 179.74601 * 15 14 13 37 37 H 0.97001 * 119.99618 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1256 6 6 4.0454 2.8306 0.2462 7 7 4.4164 3.9002 0.3393 8 7 1.6523 2.0975 -1.2519 9 6 0.4350 2.6643 -1.3669 10 8 -0.3415 2.6326 -0.4316 11 6 0.0451 3.3239 -2.6266 12 6 0.9649 3.4575 -3.6631 13 6 0.5970 4.0819 -4.8400 14 6 -0.6910 4.5719 -5.0092 15 6 -1.6221 4.4548 -4.0029 16 6 -1.2713 3.8285 -2.7927 17 6 -2.2173 3.7030 -1.7562 18 1 -2.2523 2.8011 -1.1632 19 6 -3.1139 4.7496 -1.4945 20 7 -4.0591 4.5932 -0.6065 21 14 -2.9561 6.3670 -2.4158 22 1 -3.7544 6.3040 -3.6665 23 1 -3.4591 7.4736 -1.5628 24 1 -1.5298 6.6089 -2.7505 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8570 0.8802 1.0112 31 1 4.0029 0.9837 -0.7598 32 1 2.2718 2.1232 -1.9979 33 1 1.9686 3.0765 -3.5458 34 1 1.3174 4.1860 -5.6378 35 1 -0.9632 5.0528 -5.9371 36 1 -2.6204 4.8426 -4.1418 37 1 -4.6788 5.3171 -0.4253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601445553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:51 Heat of formation + Delta-G solvation = 3.560913 kcal Electronic energy + Delta-G solvation = -20712.863605 eV Core-core repulsion = 17647.741295 eV Total energy + Delta-G solvation = -3065.122310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.51855 -37.65676 -36.59264 -35.22589 -33.65858 -32.08435 -30.59064 -30.43137 -29.55604 -25.47025 -24.38094 -22.57080 -21.43669 -20.38444 -19.64325 -17.74614 -17.43575 -16.66928 -16.13809 -15.30236 -14.84564 -14.27532 -14.14542 -14.04858 -13.97473 -13.53501 -12.96313 -12.93275 -12.66034 -12.53471 -12.34231 -12.03810 -11.91103 -11.58324 -11.43822 -11.14005 -10.97724 -10.86225 -10.72708 -10.55208 -10.42081 -10.09460 -9.79599 -9.26705 -8.51823 -8.42584 -7.83874 -7.59620 -6.87874 -4.46962 2.08319 2.58321 2.77563 2.80624 3.09044 3.18345 3.29283 3.76129 3.92566 3.96273 4.01227 4.59427 4.73523 5.04269 5.19717 5.33373 5.38673 5.42592 5.63930 5.74003 5.84874 5.97217 6.05054 6.12202 6.26163 6.35236 6.47979 6.51193 6.78007 6.90214 7.04302 7.10154 7.21667 7.36628 7.55795 7.59089 7.72550 7.99012 8.26357 8.47720 8.61273 8.82589 9.31767 10.10187 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.006502 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.820399 B = 4305.504831 C = 4814.831268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.151 3.849 4 H 0.094 0.906 5 C -0.034 4.034 6 C 0.204 3.796 7 N -0.432 5.432 8 N -0.746 5.746 9 C 0.563 3.437 10 O -0.515 6.515 11 C -0.247 4.247 12 C -0.043 4.043 13 C -0.252 4.252 14 C -0.066 4.066 15 C -0.226 4.226 16 C 0.118 3.882 17 C -0.396 4.396 18 H 0.116 0.884 19 C 0.079 3.921 20 N -0.797 5.797 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.244 1.244 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.391 0.609 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.415 -7.749 -1.312 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.044 3.956 4 H 0.112 0.888 5 C -0.074 4.074 6 C -0.114 4.114 7 N -0.109 5.109 8 N -0.402 5.402 9 C 0.356 3.644 10 O -0.391 6.391 11 C -0.251 4.251 12 C -0.062 4.062 13 C -0.271 4.271 14 C -0.085 4.085 15 C -0.245 4.245 16 C 0.113 3.887 17 C -0.423 4.423 18 H 0.134 0.866 19 C -0.140 4.140 20 N -0.421 5.421 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.217 1.217 24 H -0.167 1.167 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.225 0.775 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.152 -6.102 -0.270 11.848 hybrid contribution 0.149 0.399 -0.855 0.955 sum 10.301 -5.703 -1.125 11.828 Atomic orbital electron populations 1.21805 0.94072 1.00250 1.04300 1.21922 0.97982 0.94979 1.01735 1.20836 0.90261 0.94564 0.89918 0.88816 1.19686 0.96454 0.85341 1.05965 1.29071 0.93498 0.95214 0.93586 1.81222 1.09243 1.11947 1.08494 1.46114 1.18203 1.60620 1.15274 1.18259 0.80195 0.77553 0.88370 1.90784 1.50203 1.57860 1.40292 1.19465 0.95078 1.16064 0.94540 1.20776 0.96428 0.95821 0.93154 1.20303 0.96903 1.11169 0.98759 1.20747 0.93563 0.96908 0.97240 1.21197 0.98886 1.09656 0.94731 1.17569 0.90497 0.88600 0.92024 1.19931 1.07204 1.03393 1.11769 0.86616 1.26280 0.92383 1.01133 0.94239 1.69539 1.11680 1.34159 1.26727 0.86425 0.81350 0.80192 0.78782 1.19449 1.21724 1.16704 0.91359 0.94043 0.92029 0.91796 0.91454 0.86158 0.87088 0.77482 0.88784 0.88548 0.88570 0.87709 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.51 37.16 0.32 -1.90 16 2 C -0.13 -1.37 5.61 -26.73 -0.15 -1.52 16 3 C 0.15 1.81 2.23 -67.92 -0.15 1.66 16 4 H 0.09 1.38 7.57 -51.93 -0.39 0.99 16 5 C -0.03 -0.26 5.25 -29.51 -0.16 -0.42 16 6 C 0.20 2.53 15.14 -20.76 -0.31 2.22 16 7 N -0.43 -6.94 18.54 42.15 0.78 -6.16 16 8 N -0.75 -11.34 4.68 -54.87 -0.26 -11.60 16 9 C 0.56 11.84 6.29 -12.52 -0.08 11.76 16 10 O -0.52 -12.55 10.81 5.27 0.06 -12.50 16 11 C -0.25 -5.59 5.92 -104.36 -0.62 -6.21 16 12 C -0.04 -0.84 9.52 -39.22 -0.37 -1.21 16 13 C -0.25 -4.91 10.03 -39.37 -0.39 -5.30 16 14 C -0.07 -1.36 10.01 -39.59 -0.40 -1.76 16 15 C -0.23 -5.29 6.94 -38.89 -0.27 -5.56 16 16 C 0.12 2.98 5.04 -106.54 -0.54 2.44 16 17 C -0.40 -10.87 8.08 -37.81 -0.31 -11.18 16 18 H 0.12 3.46 6.37 -52.49 -0.33 3.13 16 19 C 0.08 2.12 5.51 -17.30 -0.10 2.02 16 20 N -0.80 -21.68 13.92 55.56 0.77 -20.91 16 21 Si 0.91 21.02 24.49 -169.99 -4.16 16.86 16 22 H -0.27 -5.90 6.70 56.52 0.38 -5.52 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.24 -5.85 6.68 56.52 0.38 -5.47 16 25 H 0.07 1.27 5.64 -51.93 -0.29 0.98 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.03 7.84 -51.93 -0.41 0.63 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.39 5.04 6.66 -40.82 -0.27 4.77 16 33 H 0.09 1.48 6.43 -52.49 -0.34 1.14 16 34 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.11 2.43 4.89 -52.49 -0.26 2.17 16 37 H 0.29 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 307.52 15.07 4.63 4.63 Total: -1.00 -31.95 307.52 -6.13 -38.08 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.43 Total: 6.54 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -3.52 Total: -14.95 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 1.30 Total: -38.67 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.16 Total: 16.86 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.95 -6.13 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.641 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds