Wall clock time and date at job start Mon Mar 30 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 H 1.08995 * 109.47082 * 54.99967 * 3 2 1 5 5 C 1.53004 * 109.47119 * 175.00437 * 3 2 1 6 6 C 1.47205 * 109.46841 * 184.99929 * 5 3 2 7 7 N 4.86396 * 126.40103 * 4.97172 * 2 1 3 8 8 N 1.46503 * 109.46778 * 294.99927 * 3 2 1 9 9 C 1.34775 * 119.99575 * 85.00200 * 8 3 2 10 10 O 1.21606 * 120.00622 * 0.02562 * 9 8 3 11 11 C 1.47437 * 119.99602 * 179.97438 * 9 8 3 12 12 C 1.39221 * 120.28570 * 354.93680 * 11 9 8 13 13 C 1.38218 * 120.09565 * 180.29336 * 12 11 9 14 14 C 1.38837 * 120.67113 * 359.44622 * 13 12 11 15 15 C 1.37594 * 120.57199 * 0.55540 * 14 13 12 16 16 C 1.40705 * 119.88018 * 359.72736 * 15 14 13 17 17 C 1.40891 * 120.32960 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00670 * 141.30218 * 17 16 15 19 19 C 1.40277 * 119.99818 * 321.30239 * 17 16 15 20 20 N 1.30626 * 120.00045 * 174.55041 * 19 17 16 21 21 Si 1.86805 * 119.99763 * 354.55314 * 19 17 16 22 22 H 1.48504 * 109.46827 * 89.16758 * 21 19 17 23 23 H 1.48498 * 109.46941 * 209.16198 * 21 19 17 24 24 H 1.48497 * 109.47347 * 329.16692 * 21 19 17 25 25 H 1.08997 * 109.47574 * 59.99996 * 1 2 3 26 26 H 1.08997 * 109.47053 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47167 * 299.99696 * 1 2 3 28 28 H 1.09001 * 109.47167 * 240.00304 * 2 1 3 29 29 H 1.09001 * 109.47763 * 119.99514 * 2 1 3 30 30 H 1.09000 * 109.46527 * 304.99838 * 5 3 2 31 31 H 1.09004 * 109.47066 * 64.99785 * 5 3 2 32 32 H 0.97001 * 120.00462 * 264.99906 * 8 3 2 33 33 H 1.07999 * 119.95309 * 0.02562 * 12 11 9 34 34 H 1.07993 * 119.66660 * 179.70415 * 13 12 11 35 35 H 1.08002 * 119.71098 * 180.30166 * 14 13 12 36 36 H 1.08000 * 120.06090 * 179.74601 * 15 14 13 37 37 H 0.97001 * 119.99618 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1256 6 6 4.0454 2.8306 0.2462 7 7 4.4164 3.9002 0.3393 8 7 1.6523 2.0975 -1.2519 9 6 0.4350 2.6643 -1.3669 10 8 -0.3415 2.6326 -0.4316 11 6 0.0451 3.3239 -2.6266 12 6 0.9649 3.4575 -3.6631 13 6 0.5970 4.0819 -4.8400 14 6 -0.6910 4.5719 -5.0092 15 6 -1.6221 4.4548 -4.0029 16 6 -1.2713 3.8285 -2.7927 17 6 -2.2173 3.7030 -1.7562 18 1 -2.2523 2.8011 -1.1632 19 6 -3.1139 4.7496 -1.4945 20 7 -4.0591 4.5932 -0.6065 21 14 -2.9561 6.3670 -2.4158 22 1 -3.7544 6.3040 -3.6665 23 1 -3.4591 7.4736 -1.5628 24 1 -1.5298 6.6089 -2.7505 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8570 0.8802 1.0112 31 1 4.0029 0.9837 -0.7598 32 1 2.2718 2.1232 -1.9979 33 1 1.9686 3.0765 -3.5458 34 1 1.3174 4.1860 -5.6378 35 1 -0.9632 5.0528 -5.9371 36 1 -2.6204 4.8426 -4.1418 37 1 -4.6788 5.3171 -0.4253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601445553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:50 Heat of formation + Delta-G solvation = -18.974243 kcal Electronic energy + Delta-G solvation = -20713.840802 eV Core-core repulsion = 17647.741295 eV Total energy + Delta-G solvation = -3066.099507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02104 -39.15289 -37.87952 -36.50448 -35.50202 -33.50618 -32.28580 -31.68186 -30.95587 -27.25039 -25.55338 -24.15453 -23.05808 -21.63512 -21.18918 -19.43836 -18.68030 -18.06189 -17.40194 -16.99164 -16.23865 -15.79939 -15.67129 -15.55456 -15.03627 -14.98215 -14.52410 -14.35848 -14.12710 -13.89785 -13.70689 -13.56671 -13.25215 -12.95744 -12.70600 -12.59158 -12.39391 -12.25240 -12.17428 -11.96286 -11.85421 -11.61139 -11.58029 -11.08708 -10.24114 -9.81595 -9.50786 -9.38817 -8.79414 -6.45018 0.36779 0.82689 1.20797 1.33653 1.42245 1.81510 1.88539 2.08458 2.33295 2.50751 2.74563 3.12398 3.54068 3.85180 4.21540 4.25269 4.27777 4.31510 4.44004 4.57837 4.69169 4.72778 4.80438 4.82955 5.01030 5.03613 5.11302 5.18018 5.31490 5.37510 5.47370 5.64078 5.68792 5.79935 5.87231 5.96269 6.26554 6.48338 6.66490 6.70030 6.81247 6.96616 7.75822 8.25704 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.006502 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.820399 B = 4305.504831 C = 4814.831268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.021 4.021 6 C 0.229 3.771 7 N -0.506 5.506 8 N -0.726 5.726 9 C 0.557 3.443 10 O -0.559 6.559 11 C -0.261 4.261 12 C -0.043 4.043 13 C -0.229 4.229 14 C -0.066 4.066 15 C -0.248 4.248 16 C 0.098 3.902 17 C -0.438 4.438 18 H 0.068 0.932 19 C 0.035 3.965 20 N -0.855 5.855 21 Si 0.963 3.037 22 H -0.248 1.248 23 H -0.284 1.284 24 H -0.255 1.255 25 H 0.024 0.976 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.406 0.594 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.672 -8.942 -4.027 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.039 3.961 4 H 0.076 0.924 5 C -0.060 4.060 6 C -0.088 4.088 7 N -0.184 5.184 8 N -0.382 5.382 9 C 0.348 3.652 10 O -0.438 6.438 11 C -0.265 4.265 12 C -0.062 4.062 13 C -0.248 4.248 14 C -0.084 4.084 15 C -0.267 4.267 16 C 0.094 3.906 17 C -0.468 4.468 18 H 0.086 0.914 19 C -0.177 4.177 20 N -0.483 5.483 21 Si 0.786 3.214 22 H -0.172 1.172 23 H -0.211 1.211 24 H -0.179 1.179 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.186 0.814 31 H 0.175 0.825 32 H 0.244 0.756 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.118 0.882 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.461 -7.322 -3.013 16.486 hybrid contribution -0.882 0.583 -0.168 1.071 sum 13.578 -6.739 -3.182 15.489 Atomic orbital electron populations 1.21749 0.98080 0.99966 1.00619 1.21886 0.94025 0.94333 1.05113 1.21048 0.93401 0.94676 0.86976 0.92380 1.20012 0.92374 0.83288 1.10367 1.29941 0.91753 0.95726 0.91382 1.81255 1.11628 1.14286 1.11210 1.45897 1.16183 1.59036 1.17071 1.18282 0.81647 0.77731 0.87497 1.90793 1.51995 1.59500 1.41545 1.19987 0.95046 1.15109 0.96400 1.21251 0.97778 0.95089 0.92071 1.20962 0.96963 1.07550 0.99321 1.21239 0.93541 0.96009 0.97625 1.21295 0.99812 1.10595 0.94995 1.17852 0.91265 0.89375 0.92087 1.19680 1.10406 1.03151 1.13558 0.91391 1.26949 0.92069 1.03740 0.94970 1.69604 1.13693 1.35410 1.29573 0.85572 0.80596 0.76688 0.78505 1.17234 1.21148 1.17883 0.95671 0.92482 0.95282 0.88919 0.87346 0.81437 0.82478 0.75641 0.84140 0.83945 0.84821 0.88187 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 8.51 71.98 0.61 -3.92 16 2 C -0.12 -2.08 5.61 30.60 0.17 -1.91 16 3 C 0.14 3.10 2.23 44.99 0.10 3.20 16 4 H 0.06 1.71 7.57 -2.39 -0.02 1.69 16 5 C -0.02 -0.21 5.25 28.79 0.15 -0.06 16 6 C 0.23 4.97 15.14 89.44 1.35 6.33 16 7 N -0.51 -15.58 18.54 20.01 0.37 -15.21 16 8 N -0.73 -20.62 4.68 -445.77 -2.09 -22.70 16 9 C 0.56 23.96 6.29 86.67 0.54 24.51 16 10 O -0.56 -29.51 10.81 -4.05 -0.04 -29.56 16 11 C -0.26 -11.77 5.92 -19.70 -0.12 -11.89 16 12 C -0.04 -1.52 9.52 22.50 0.21 -1.31 16 13 C -0.23 -7.66 10.03 22.41 0.22 -7.44 16 14 C -0.07 -2.47 10.01 22.26 0.22 -2.25 16 15 C -0.25 -11.49 6.94 22.72 0.16 -11.34 16 16 C 0.10 5.12 5.04 -21.11 -0.11 5.02 16 17 C -0.44 -26.24 8.08 23.42 0.19 -26.05 16 18 H 0.07 4.58 6.37 -2.91 -0.02 4.57 16 19 C 0.04 2.04 5.51 85.37 0.47 2.51 16 20 N -0.86 -50.85 13.92 21.88 0.30 -50.54 16 21 Si 0.96 45.31 24.49 68.60 1.68 46.99 16 22 H -0.25 -10.61 6.70 99.48 0.67 -9.94 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.25 -12.20 6.68 99.48 0.66 -11.54 16 25 H 0.02 0.97 5.64 -2.39 -0.01 0.96 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.03 1.04 7.84 -2.39 -0.02 1.02 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.16 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.41 8.73 6.66 -92.71 -0.62 8.11 16 33 H 0.14 3.57 6.43 -2.91 -0.02 3.55 16 34 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 36 H 0.10 4.65 4.89 -2.91 -0.01 4.64 16 37 H 0.29 15.55 8.29 -92.71 -0.77 14.78 16 Total: -1.00 -82.61 307.52 4.82 -77.79 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.41 Total: 17.82 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.19 Total: -24.59 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -1.41 Total: -88.46 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.04 Total: -29.56 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.68 Total: 46.99 kcal Total: -82.61 4.82 -77.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.817 kcal (2) G-P(sol) polarization free energy of solvation -82.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds