Wall clock time and date at job start Mon Mar 30 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35492 * 117.00124 * 2 1 4 4 N 1.31763 * 120.12593 * 359.97438 * 3 2 1 5 5 C 1.32649 * 122.68007 * 180.02562 * 4 3 2 6 6 C 1.36084 * 121.96330 * 0.27422 * 5 4 3 7 7 C 1.50692 * 120.59648 * 179.70443 * 6 5 4 8 8 N 1.46504 * 109.47164 * 259.99818 * 7 6 5 9 9 C 1.46504 * 120.00171 * 270.00460 * 8 7 6 10 10 C 1.36937 * 120.00009 * 89.99991 * 8 7 6 11 11 H 1.07997 * 119.99915 * 22.56232 * 10 8 7 12 12 C 1.38818 * 119.99871 * 202.57295 * 10 8 7 13 13 N 1.31617 * 120.00184 * 14.89818 * 12 10 8 14 14 Si 1.86802 * 119.99797 * 194.90000 * 12 10 8 15 15 H 1.48494 * 109.46869 * 89.99793 * 14 12 10 16 16 H 1.48498 * 109.47197 * 209.99886 * 14 12 10 17 17 H 1.48502 * 109.47172 * 329.99704 * 14 12 10 18 18 C 1.40809 * 118.80545 * 359.46631 * 6 5 4 19 19 C 1.40195 * 122.18014 * 180.23345 * 18 6 5 20 20 C 1.36265 * 119.47364 * 180.27227 * 19 18 6 21 21 C 1.39302 * 120.98952 * 0.04083 * 20 19 18 22 22 C 1.36265 * 121.05596 * 359.95657 * 21 20 19 23 23 C 1.40170 * 119.53261 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47594 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47920 * 300.00778 * 1 2 3 26 26 H 1.09004 * 109.47088 * 60.01007 * 1 2 3 27 27 H 1.08006 * 119.02091 * 179.97438 * 5 4 3 28 28 H 1.08995 * 109.47565 * 19.99801 * 7 6 5 29 29 H 1.09005 * 109.47385 * 140.00227 * 7 6 5 30 30 H 1.08999 * 109.47097 * 88.30597 * 9 8 7 31 31 H 1.09000 * 109.47103 * 208.31201 * 9 8 7 32 32 H 1.09001 * 109.46620 * 328.30925 * 9 8 7 33 33 H 0.96996 * 120.00117 * 179.97438 * 13 12 10 34 34 H 1.08001 * 120.26102 * 0.26971 * 19 18 6 35 35 H 1.08005 * 119.50470 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.47518 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.23466 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 7 1.3289 2.3139 -0.0005 5 6 1.8779 3.5214 -0.0010 6 6 3.2270 3.6994 -0.0066 7 6 3.8178 5.0857 -0.0137 8 7 4.2249 5.4361 -1.3768 9 6 5.5787 5.1222 -1.8404 10 6 3.3400 6.0569 -2.2174 11 1 2.5057 6.6091 -1.8110 12 6 3.5154 5.9763 -3.5921 13 7 4.3368 5.0817 -4.0994 14 14 2.5856 7.1375 -4.7220 15 1 3.3913 8.3655 -4.9411 16 1 2.3386 6.4686 -6.0245 17 1 1.2879 7.5015 -4.0984 18 6 4.0611 2.5650 -0.0005 19 6 5.4594 2.6663 -0.0008 20 6 6.2138 1.5315 -0.0003 21 6 5.6164 0.2731 -0.0003 22 6 4.2604 0.1386 0.0000 23 6 3.4525 1.2841 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.2350 4.3893 -0.0019 28 1 3.0732 5.7998 0.3379 29 1 4.6869 5.1138 0.6436 30 1 5.5947 4.1168 -2.2611 31 1 5.8769 5.8404 -2.6042 32 1 6.2718 5.1758 -1.0009 33 1 4.4590 5.0251 -5.0600 34 1 5.9348 3.6360 -0.0014 35 1 7.2911 1.6090 -0.0001 36 1 6.2379 -0.6102 -0.0004 37 1 3.8113 -0.8436 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602771506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:08 Heat of formation + Delta-G solvation = 44.561976 kcal Electronic energy + Delta-G solvation = -20945.199637 eV Core-core repulsion = 17881.855266 eV Total energy + Delta-G solvation = -3063.344370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62018 -38.31271 -36.67382 -35.58250 -32.57103 -30.96716 -30.62514 -29.33211 -27.28721 -25.99632 -25.47266 -23.23374 -23.04535 -21.88484 -20.03417 -18.12975 -17.55706 -16.81423 -16.43845 -15.72919 -15.11871 -14.86368 -14.61646 -14.00384 -13.85047 -13.41833 -13.34684 -13.17857 -12.94799 -12.57236 -11.93989 -11.74272 -11.72045 -11.45883 -11.12835 -10.97389 -10.79643 -10.73368 -10.61204 -10.33575 -10.00538 -9.97157 -9.18382 -9.10512 -8.64606 -8.59107 -7.25343 -6.80886 -5.83939 -3.22808 0.95680 1.37280 2.45035 3.32523 3.34922 3.41050 3.42420 3.53932 4.42015 4.58030 4.85835 5.06157 5.21356 5.25430 5.35313 5.38792 5.45666 5.47886 5.63235 5.65794 5.73482 5.79048 5.85519 6.05170 6.25146 6.34275 6.51112 6.51789 6.55293 6.67117 6.79139 6.93420 7.09532 7.26669 7.28836 7.60549 7.63714 7.73413 8.29735 8.44715 9.12430 9.74826 10.23689 11.21723 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.006734 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.023522 B = 4157.117028 C = 5001.386546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.311 6.311 3 C 0.324 3.676 4 N -0.541 5.541 5 C 0.107 3.893 6 C -0.142 4.142 7 C 0.186 3.814 8 N -0.584 5.584 9 C 0.158 3.842 10 C -0.254 4.254 11 H 0.073 0.927 12 C 0.004 3.996 13 N -0.897 5.897 14 Si 0.906 3.094 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.278 1.278 18 C 0.014 3.986 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.134 4.134 22 C -0.082 4.082 23 C -0.107 4.107 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.149 0.851 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.055 0.945 32 H -0.001 1.001 33 H 0.255 0.745 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.123 -8.126 9.572 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.217 6.217 3 C 0.132 3.868 4 N -0.266 5.266 5 C -0.037 4.037 6 C -0.149 4.149 7 C 0.059 3.941 8 N -0.303 5.303 9 C 0.014 3.986 10 C -0.383 4.383 11 H 0.090 0.910 12 C -0.196 4.196 13 N -0.541 5.541 14 Si 0.736 3.264 15 H -0.213 1.213 16 H -0.218 1.218 17 H -0.203 1.203 18 C 0.009 3.991 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.152 4.152 22 C -0.101 4.101 23 C -0.109 4.109 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.166 0.834 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.017 0.983 33 H 0.065 0.935 34 H 0.155 0.845 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.857 -8.305 9.350 12.535 hybrid contribution 0.001 0.510 -1.074 1.189 sum -0.855 -7.795 8.276 11.401 Atomic orbital electron populations 1.22775 0.77768 1.02234 1.02467 1.86094 1.22430 1.25019 1.88140 1.19729 0.88124 0.84801 0.94136 1.66964 1.41196 0.98735 1.19702 1.21468 0.92865 0.92169 0.97224 1.21715 0.94329 0.98319 1.00491 1.19873 0.97165 0.88607 0.88472 1.44257 1.09970 1.66122 1.09998 1.20950 0.82851 1.00239 0.94556 1.19289 1.08325 1.23565 0.87154 0.90957 1.25084 0.99309 0.97952 0.97250 1.70080 1.39259 1.33250 1.11474 0.86223 0.79549 0.80380 0.80243 1.21302 1.21751 1.20307 1.17871 0.94053 0.91211 0.96004 1.21174 0.92230 0.99526 0.98864 1.20881 0.99873 0.92458 0.99587 1.20761 0.94687 0.97407 1.02329 1.20797 0.93544 0.97383 0.98423 1.17945 0.90637 0.94646 1.07682 0.89142 0.92534 0.92391 0.83369 0.92261 0.93141 0.95618 0.92629 0.98280 0.93536 0.84539 0.86140 0.86292 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.39 101.05 1.05 1.61 16 2 O -0.31 -5.15 9.78 -18.17 -0.18 -5.32 16 3 C 0.32 6.20 7.54 -16.51 -0.12 6.07 16 4 N -0.54 -10.74 9.20 -13.25 -0.12 -10.86 16 5 C 0.11 2.15 10.71 -17.97 -0.19 1.95 16 6 C -0.14 -2.90 5.48 -104.43 -0.57 -3.48 16 7 C 0.19 3.75 5.38 -5.20 -0.03 3.72 16 8 N -0.58 -14.18 2.90 -182.50 -0.53 -14.71 16 9 C 0.16 3.75 7.44 59.85 0.45 4.20 16 10 C -0.25 -6.79 9.65 -15.06 -0.15 -6.93 16 11 H 0.07 1.88 7.86 -52.49 -0.41 1.47 16 12 C 0.00 0.10 5.01 -17.43 -0.09 0.01 16 13 N -0.90 -25.99 10.84 55.49 0.60 -25.39 16 14 Si 0.91 21.70 29.58 -169.99 -5.03 16.67 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.01 0.27 5.75 -106.83 -0.61 -0.34 16 19 C -0.10 -1.77 8.15 -39.56 -0.32 -2.09 16 20 C -0.11 -1.64 9.95 -39.90 -0.40 -2.04 16 21 C -0.13 -1.93 9.95 -39.90 -0.40 -2.33 16 22 C -0.08 -1.32 9.59 -39.57 -0.38 -1.70 16 23 C -0.11 -2.03 5.75 -106.74 -0.61 -2.64 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 26 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 27 H 0.15 2.76 8.01 -52.48 -0.42 2.34 16 28 H 0.06 1.12 7.88 -51.93 -0.41 0.71 16 29 H 0.05 0.91 6.86 -51.93 -0.36 0.55 16 30 H 0.03 0.66 7.17 -51.93 -0.37 0.29 16 31 H 0.06 1.43 6.90 -51.93 -0.36 1.08 16 32 H 0.00 -0.02 6.64 -51.93 -0.34 -0.37 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.14 2.37 4.33 -52.49 -0.23 2.14 16 35 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.13 1.79 7.68 -52.49 -0.40 1.39 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -31.11 306.48 -7.56 -38.68 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.55 Total: 0.30 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.38 Total: -3.99 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.05 Total: -50.96 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.18 Total: -5.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.11 -7.56 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602771506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.241 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds