Wall clock time and date at job start Mon Mar 30 2020 01:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35492 * 117.00124 * 2 1 4 4 N 1.31763 * 120.12593 * 359.97438 * 3 2 1 5 5 C 1.32649 * 122.68007 * 180.02562 * 4 3 2 6 6 C 1.36084 * 121.96330 * 0.27422 * 5 4 3 7 7 C 1.50692 * 120.59648 * 179.70443 * 6 5 4 8 8 N 1.46504 * 109.47164 * 259.99818 * 7 6 5 9 9 C 1.46504 * 120.00171 * 270.00460 * 8 7 6 10 10 C 1.36937 * 120.00009 * 89.99991 * 8 7 6 11 11 H 1.07997 * 119.99915 * 22.56232 * 10 8 7 12 12 C 1.38818 * 119.99871 * 202.57295 * 10 8 7 13 13 N 1.31617 * 120.00184 * 14.89818 * 12 10 8 14 14 Si 1.86802 * 119.99797 * 194.90000 * 12 10 8 15 15 H 1.48494 * 109.46869 * 89.99793 * 14 12 10 16 16 H 1.48498 * 109.47197 * 209.99886 * 14 12 10 17 17 H 1.48502 * 109.47172 * 329.99704 * 14 12 10 18 18 C 1.40809 * 118.80545 * 359.46631 * 6 5 4 19 19 C 1.40195 * 122.18014 * 180.23345 * 18 6 5 20 20 C 1.36265 * 119.47364 * 180.27227 * 19 18 6 21 21 C 1.39302 * 120.98952 * 0.04083 * 20 19 18 22 22 C 1.36265 * 121.05596 * 359.95657 * 21 20 19 23 23 C 1.40170 * 119.53261 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47594 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47920 * 300.00778 * 1 2 3 26 26 H 1.09004 * 109.47088 * 60.01007 * 1 2 3 27 27 H 1.08006 * 119.02091 * 179.97438 * 5 4 3 28 28 H 1.08995 * 109.47565 * 19.99801 * 7 6 5 29 29 H 1.09005 * 109.47385 * 140.00227 * 7 6 5 30 30 H 1.08999 * 109.47097 * 88.30597 * 9 8 7 31 31 H 1.09000 * 109.47103 * 208.31201 * 9 8 7 32 32 H 1.09001 * 109.46620 * 328.30925 * 9 8 7 33 33 H 0.96996 * 120.00117 * 179.97438 * 13 12 10 34 34 H 1.08001 * 120.26102 * 0.26971 * 19 18 6 35 35 H 1.08005 * 119.50470 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.47518 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.23466 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 7 1.3289 2.3139 -0.0005 5 6 1.8779 3.5214 -0.0010 6 6 3.2270 3.6994 -0.0066 7 6 3.8178 5.0857 -0.0137 8 7 4.2249 5.4361 -1.3768 9 6 5.5787 5.1222 -1.8404 10 6 3.3400 6.0569 -2.2174 11 1 2.5057 6.6091 -1.8110 12 6 3.5154 5.9763 -3.5921 13 7 4.3368 5.0817 -4.0994 14 14 2.5856 7.1375 -4.7220 15 1 3.3913 8.3655 -4.9411 16 1 2.3386 6.4686 -6.0245 17 1 1.2879 7.5015 -4.0984 18 6 4.0611 2.5650 -0.0005 19 6 5.4594 2.6663 -0.0008 20 6 6.2138 1.5315 -0.0003 21 6 5.6164 0.2731 -0.0003 22 6 4.2604 0.1386 0.0000 23 6 3.4525 1.2841 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.2350 4.3893 -0.0019 28 1 3.0732 5.7998 0.3379 29 1 4.6869 5.1138 0.6436 30 1 5.5947 4.1168 -2.2611 31 1 5.8769 5.8404 -2.6042 32 1 6.2718 5.1758 -1.0009 33 1 4.4590 5.0251 -5.0600 34 1 5.9348 3.6360 -0.0014 35 1 7.2911 1.6090 -0.0001 36 1 6.2379 -0.6102 -0.0004 37 1 3.8113 -0.8436 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602771506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:07 Heat of formation + Delta-G solvation = 24.925161 kcal Electronic energy + Delta-G solvation = -20946.051153 eV Core-core repulsion = 17881.855266 eV Total energy + Delta-G solvation = -3064.195886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.01124 -39.62783 -38.09681 -37.28807 -34.24146 -32.51306 -32.14102 -30.78152 -28.50577 -27.89734 -27.09355 -24.60858 -24.41158 -23.58791 -21.57094 -19.46299 -19.02683 -18.54659 -17.89816 -17.05088 -16.88423 -16.13283 -16.11296 -15.61038 -15.41651 -15.02979 -14.79232 -14.64680 -14.39650 -14.01167 -13.63236 -13.10180 -13.00795 -12.88481 -12.80210 -12.61680 -12.44759 -12.27414 -12.19056 -12.05450 -11.84418 -11.70407 -10.69120 -10.56847 -10.47976 -9.97715 -8.89280 -8.53488 -7.86803 -5.29602 -0.40232 -0.00082 1.06023 1.45200 1.45770 1.53978 2.04219 2.18824 2.50181 3.12700 3.30498 3.45208 3.74657 3.85509 3.92964 4.03763 4.10705 4.32330 4.38298 4.41881 4.46850 4.53147 4.65477 4.74366 4.81563 4.85015 4.98133 5.07514 5.15106 5.24245 5.35053 5.49703 5.58450 5.61830 5.68772 5.72263 6.01050 6.24596 6.31209 6.96068 7.12983 7.83887 8.27491 9.17756 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.006734 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.023522 B = 4157.117028 C = 5001.386546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.311 6.311 3 C 0.325 3.675 4 N -0.559 5.559 5 C 0.094 3.906 6 C -0.159 4.159 7 C 0.190 3.810 8 N -0.600 5.600 9 C 0.177 3.823 10 C -0.257 4.257 11 H 0.075 0.925 12 C -0.052 4.052 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.282 1.282 16 H -0.301 1.301 17 H -0.269 1.269 18 C -0.008 4.008 19 C -0.123 4.123 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.087 4.087 23 C -0.133 4.133 24 H 0.131 0.869 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.154 0.846 28 H 0.067 0.933 29 H 0.073 0.927 30 H -0.002 1.002 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.246 0.754 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -9.751 10.757 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.217 6.217 3 C 0.133 3.867 4 N -0.285 5.285 5 C -0.049 4.049 6 C -0.165 4.165 7 C 0.063 3.937 8 N -0.321 5.321 9 C 0.032 3.968 10 C -0.387 4.387 11 H 0.092 0.908 12 C -0.247 4.247 13 N -0.580 5.580 14 Si 0.793 3.207 15 H -0.209 1.209 16 H -0.228 1.228 17 H -0.193 1.193 18 C -0.013 4.013 19 C -0.141 4.141 20 C -0.114 4.114 21 C -0.141 4.141 22 C -0.106 4.106 23 C -0.135 4.135 24 H 0.149 0.851 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.171 0.829 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.016 0.984 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.322 -9.943 10.590 14.530 hybrid contribution -0.164 0.794 -1.244 1.485 sum -0.486 -9.149 9.346 13.088 Atomic orbital electron populations 1.23072 0.75831 1.04792 1.02010 1.86099 1.24312 1.23665 1.87611 1.20068 0.88717 0.85318 0.92636 1.66978 1.41485 0.98889 1.21131 1.21650 0.93180 0.92711 0.97337 1.21707 0.94635 0.98568 1.01556 1.19928 0.98273 0.88832 0.86631 1.44321 1.09971 1.67146 1.10711 1.20656 0.83649 0.97593 0.94874 1.19572 1.08081 1.23392 0.87681 0.90766 1.25751 1.00746 0.99569 0.98630 1.70241 1.41578 1.35283 1.10887 0.85308 0.78814 0.78583 0.78033 1.20905 1.22790 1.19348 1.18150 0.95152 0.91409 0.96587 1.21269 0.91629 1.00637 1.00575 1.21371 1.01612 0.91886 0.96518 1.21258 0.94440 0.98653 0.99789 1.21118 0.94285 0.97271 0.97955 1.18280 0.91095 0.95535 1.08627 0.85066 0.92336 0.93509 0.82911 0.91519 0.90922 0.98369 0.95685 0.94680 0.94459 0.84738 0.82642 0.82069 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 10.39 113.37 1.18 2.09 16 2 O -0.31 -9.84 9.78 -87.92 -0.86 -10.70 16 3 C 0.32 12.25 7.54 85.39 0.64 12.89 16 4 N -0.56 -22.32 9.20 -309.06 -2.84 -25.16 16 5 C 0.09 3.84 10.71 84.07 0.90 4.74 16 6 C -0.16 -6.54 5.48 -19.74 -0.11 -6.64 16 7 C 0.19 7.61 5.38 85.63 0.46 8.07 16 8 N -0.60 -29.40 2.90 -731.30 -2.12 -31.52 16 9 C 0.18 8.47 7.44 127.77 0.95 9.42 16 10 C -0.26 -13.93 9.65 84.03 0.81 -13.12 16 11 H 0.07 3.89 7.86 -2.91 -0.02 3.87 16 12 C -0.05 -2.90 5.01 84.86 0.43 -2.48 16 13 N -0.93 -55.81 10.84 21.65 0.23 -55.57 16 14 Si 0.96 45.57 29.58 68.60 2.03 47.60 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C -0.01 -0.31 5.75 -21.29 -0.12 -0.43 16 19 C -0.12 -4.19 8.15 22.29 0.18 -4.00 16 20 C -0.09 -2.56 9.95 22.07 0.22 -2.34 16 21 C -0.12 -3.08 9.95 22.07 0.22 -2.86 16 22 C -0.09 -2.56 9.59 22.28 0.21 -2.35 16 23 C -0.13 -4.93 5.75 -21.24 -0.12 -5.05 16 24 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 26 H 0.05 1.24 8.11 -2.38 -0.02 1.22 16 27 H 0.15 5.83 8.01 -2.91 -0.02 5.81 16 28 H 0.07 2.52 7.88 -2.39 -0.02 2.50 16 29 H 0.07 2.54 6.86 -2.38 -0.02 2.52 16 30 H 0.00 -0.10 7.17 -2.39 -0.02 -0.12 16 31 H 0.02 1.31 6.90 -2.39 -0.02 1.29 16 32 H 0.03 1.38 6.64 -2.39 -0.02 1.37 16 33 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 34 H 0.13 4.50 4.33 -2.91 -0.01 4.49 16 35 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.15 3.67 7.68 -2.91 -0.02 3.64 16 Total: -1.00 -68.96 306.48 3.37 -65.60 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.08 Total: 11.81 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.85 Total: -2.05 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.73 Total: -112.26 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.86 Total: -10.70 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.96 3.37 -65.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602771506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.520 kcal (2) G-P(sol) polarization free energy of solvation -68.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds