Wall clock time and date at job start Mon Mar 30 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00223 * 2 1 4 4 C 1.50707 * 109.47514 * 270.00507 * 3 2 1 5 5 H 1.08003 * 119.99337 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00358 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99944 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00310 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47047 * 59.99844 * 8 6 4 10 10 H 1.48502 * 109.47526 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46790 * 300.00224 * 8 6 4 12 12 C 1.34781 * 119.99817 * 180.02562 * 2 1 3 13 13 O 1.21608 * 120.00199 * 184.40309 * 12 2 1 14 14 C 1.47374 * 119.99839 * 4.40417 * 12 2 1 15 15 C 1.39321 * 120.34685 * 311.12579 * 14 12 2 16 16 C 1.38273 * 120.20636 * 180.02562 * 15 14 12 17 17 C 1.38063 * 120.87904 * 359.97438 * 16 15 14 18 18 C 1.38986 * 120.26837 * 359.97438 * 17 16 15 19 19 C 1.40660 * 119.51912 * 0.02562 * 18 17 16 20 20 C 1.45994 * 106.13144 * 180.02562 * 19 18 17 21 21 C 1.34546 * 107.00738 * 0.02562 * 20 19 18 22 22 N 1.36547 * 109.90141 * 0.02562 * 21 20 19 23 23 C 1.46501 * 125.07784 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.46698 * 272.98852 * 1 2 3 25 25 H 1.08999 * 109.47104 * 32.98343 * 1 2 3 26 26 H 1.09001 * 109.47777 * 152.99287 * 1 2 3 27 27 H 1.09004 * 109.47336 * 30.00548 * 3 2 1 28 28 H 1.09003 * 109.47570 * 150.00293 * 3 2 1 29 29 H 0.97006 * 120.00349 * 179.97438 * 7 6 4 30 30 H 1.08003 * 119.89953 * 0.02562 * 15 14 12 31 31 H 1.07991 * 119.56223 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.86565 * 179.70006 * 17 16 15 33 33 H 1.07999 * 126.49675 * 180.02562 * 20 19 18 34 34 H 1.08001 * 125.05037 * 179.97438 * 21 20 19 35 35 H 1.09005 * 109.46939 * 89.97409 * 23 22 21 36 36 H 1.08997 * 109.47177 * 209.96946 * 23 22 21 37 37 H 1.08994 * 109.46977 * 329.98106 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4379 3.4170 -3.4339 9 1 2.1405 3.5938 -4.1346 10 1 4.1803 4.7031 -3.4339 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1673 -0.0005 13 8 3.3523 -1.1689 0.0803 14 6 1.4052 -2.4416 -0.0991 15 6 0.3107 -2.6894 0.7266 16 6 -0.3752 -3.8862 0.6320 17 6 0.0078 -4.8526 -0.2766 18 6 1.0949 -4.6345 -1.1148 19 6 1.8027 -3.4219 -1.0304 20 6 2.8674 -3.5037 -2.0261 21 6 2.7513 -4.7009 -2.6289 22 7 1.6979 -5.3886 -2.0979 23 6 1.2729 -6.7283 -2.5110 24 1 -0.3633 0.0536 1.0263 25 1 -0.3633 0.8620 -0.5595 26 1 -0.3635 -0.9156 -0.4666 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1383 0.5138 29 1 4.0302 4.4439 -0.8504 30 1 -0.0029 -1.9443 1.4428 31 1 -1.2218 -4.0676 1.2774 32 1 -0.5367 -5.7835 -0.3333 33 1 3.6078 -2.7466 -2.2384 34 1 3.3951 -5.0638 -3.4165 35 1 1.7928 -7.4754 -1.9112 36 1 0.1975 -6.8295 -2.3650 37 1 1.5125 -6.8769 -3.5638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608877904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:10 Heat of formation + Delta-G solvation = 38.168133 kcal Electronic energy + Delta-G solvation = -20466.957990 eV Core-core repulsion = 17403.336362 eV Total energy + Delta-G solvation = -3063.621628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23697 -38.88332 -36.56494 -34.70835 -32.79756 -32.55162 -30.49040 -28.90469 -27.61368 -26.21252 -25.78475 -23.72990 -22.19961 -21.45073 -20.53220 -18.42992 -16.89967 -16.62744 -16.42719 -15.62625 -15.40494 -15.17933 -15.07934 -14.41225 -14.21247 -13.49070 -13.33480 -12.89560 -12.74740 -12.60737 -12.34239 -12.28103 -12.08761 -11.78483 -11.35011 -11.20844 -11.17993 -11.01560 -10.83228 -10.50136 -10.10408 -9.60498 -9.44224 -8.83394 -8.37736 -8.09003 -7.56654 -7.44669 -5.98526 -4.03087 1.03445 1.69565 2.80772 2.85366 3.36011 3.39882 3.42283 3.51478 3.95073 4.26157 4.49509 4.60555 4.75738 4.90859 4.97031 5.05438 5.15446 5.22853 5.34664 5.42585 5.59061 5.71157 5.83231 5.84497 6.02073 6.09233 6.28229 6.34410 6.52269 6.62423 6.80827 6.89006 7.16478 7.27332 7.35488 7.52027 7.62320 7.98458 8.29913 8.49370 8.96148 9.16871 9.61709 11.09525 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.005200 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.178917 B = 5383.238011 C = 6146.636421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.595 5.595 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.549 3.451 13 O -0.534 6.534 14 C -0.061 4.061 15 C -0.122 4.122 16 C -0.104 4.104 17 C -0.123 4.123 18 C 0.091 3.909 19 C -0.068 4.068 20 C -0.181 4.181 21 C 0.041 3.959 22 N -0.493 5.493 23 C 0.083 3.917 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 -19.207 -1.388 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.326 5.326 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.335 3.665 13 O -0.412 6.412 14 C -0.065 4.065 15 C -0.142 4.142 16 C -0.124 4.124 17 C -0.144 4.144 18 C -0.015 4.015 19 C -0.074 4.074 20 C -0.206 4.206 21 C -0.083 4.083 22 N -0.178 5.178 23 C -0.059 4.059 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.170 0.830 34 H 0.186 0.814 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.683 -19.309 -1.431 21.220 hybrid contribution 0.120 0.322 -1.056 1.111 sum -8.563 -18.987 -2.487 20.976 Atomic orbital electron populations 1.21831 0.81464 1.02802 1.00411 1.48076 1.06255 1.07517 1.70778 1.19309 0.92678 0.77928 0.97529 1.21414 1.36472 1.06262 0.92300 0.92477 1.24921 0.95386 0.96364 0.97370 1.69926 1.38415 1.14365 1.30750 0.86566 0.78341 0.77783 0.84772 1.20271 1.21192 1.20180 1.18081 0.87240 0.83304 0.77848 1.90755 1.13422 1.87081 1.49919 1.19634 0.95826 0.94550 0.96484 1.21158 0.95004 0.97939 1.00123 1.20650 1.00075 0.93168 0.98465 1.19987 0.96546 1.00298 0.97531 1.18142 0.97309 0.91994 0.94009 1.18961 0.97274 0.92927 0.98201 1.21881 1.01400 0.98107 0.99164 1.21813 0.92272 0.93216 1.01019 1.43694 1.26991 1.15098 1.32033 1.21862 1.01271 0.81633 1.01135 0.93661 0.91092 0.91667 0.94882 0.93630 0.92700 0.85229 0.85486 0.86558 0.82988 0.81445 0.91596 0.90376 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 9.09 59.85 0.54 1.92 16 2 N -0.59 -13.60 2.86 -184.25 -0.53 -14.13 16 3 C 0.24 6.66 5.21 -5.20 -0.03 6.63 16 4 C -0.53 -15.35 9.39 -34.44 -0.32 -15.67 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.55 12.76 7.15 -12.54 -0.09 12.67 16 13 O -0.53 -14.56 16.48 5.27 0.09 -14.48 16 14 C -0.06 -1.16 4.92 -104.75 -0.52 -1.67 16 15 C -0.12 -1.83 7.60 -39.17 -0.30 -2.13 16 16 C -0.10 -1.27 9.99 -39.63 -0.40 -1.66 16 17 C -0.12 -1.51 9.93 -39.37 -0.39 -1.90 16 18 C 0.09 1.34 6.80 -83.99 -0.57 0.77 16 19 C -0.07 -1.24 6.13 -104.85 -0.64 -1.88 16 20 C -0.18 -3.14 10.84 -37.78 -0.41 -3.55 16 21 C 0.04 0.53 11.29 -16.76 -0.19 0.34 16 22 N -0.49 -6.09 3.17 -121.81 -0.39 -6.47 16 23 C 0.08 0.60 11.02 59.85 0.66 1.26 16 24 H 0.04 0.66 7.56 -51.93 -0.39 0.27 16 25 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 26 H 0.06 1.03 5.67 -51.93 -0.29 0.73 16 27 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.05 1.39 7.37 -51.93 -0.38 1.01 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.13 1.75 6.54 -52.48 -0.34 1.41 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.15 2.86 8.06 -52.49 -0.42 2.43 16 34 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 37 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -35.93 317.50 -7.83 -43.75 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.75 Total: -1.17 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.75 Total: -3.18 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.18 Total: -46.96 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.09 Total: -14.48 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.93 -7.83 -43.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608877904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.922 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds