Wall clock time and date at job start Mon Mar 30 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00223 * 2 1 4 4 C 1.50707 * 109.47514 * 270.00507 * 3 2 1 5 5 H 1.08003 * 119.99337 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00358 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99944 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00310 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47047 * 59.99844 * 8 6 4 10 10 H 1.48502 * 109.47526 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46790 * 300.00224 * 8 6 4 12 12 C 1.34781 * 119.99817 * 180.02562 * 2 1 3 13 13 O 1.21608 * 120.00199 * 184.40309 * 12 2 1 14 14 C 1.47374 * 119.99839 * 4.40417 * 12 2 1 15 15 C 1.39321 * 120.34685 * 311.12579 * 14 12 2 16 16 C 1.38273 * 120.20636 * 180.02562 * 15 14 12 17 17 C 1.38063 * 120.87904 * 359.97438 * 16 15 14 18 18 C 1.38986 * 120.26837 * 359.97438 * 17 16 15 19 19 C 1.40660 * 119.51912 * 0.02562 * 18 17 16 20 20 C 1.45994 * 106.13144 * 180.02562 * 19 18 17 21 21 C 1.34546 * 107.00738 * 0.02562 * 20 19 18 22 22 N 1.36547 * 109.90141 * 0.02562 * 21 20 19 23 23 C 1.46501 * 125.07784 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.46698 * 272.98852 * 1 2 3 25 25 H 1.08999 * 109.47104 * 32.98343 * 1 2 3 26 26 H 1.09001 * 109.47777 * 152.99287 * 1 2 3 27 27 H 1.09004 * 109.47336 * 30.00548 * 3 2 1 28 28 H 1.09003 * 109.47570 * 150.00293 * 3 2 1 29 29 H 0.97006 * 120.00349 * 179.97438 * 7 6 4 30 30 H 1.08003 * 119.89953 * 0.02562 * 15 14 12 31 31 H 1.07991 * 119.56223 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.86565 * 179.70006 * 17 16 15 33 33 H 1.07999 * 126.49675 * 180.02562 * 20 19 18 34 34 H 1.08001 * 125.05037 * 179.97438 * 21 20 19 35 35 H 1.09005 * 109.46939 * 89.97409 * 23 22 21 36 36 H 1.08997 * 109.47177 * 209.96946 * 23 22 21 37 37 H 1.08994 * 109.46977 * 329.98106 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4379 3.4170 -3.4339 9 1 2.1405 3.5938 -4.1346 10 1 4.1803 4.7031 -3.4339 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1673 -0.0005 13 8 3.3523 -1.1689 0.0803 14 6 1.4052 -2.4416 -0.0991 15 6 0.3107 -2.6894 0.7266 16 6 -0.3752 -3.8862 0.6320 17 6 0.0078 -4.8526 -0.2766 18 6 1.0949 -4.6345 -1.1148 19 6 1.8027 -3.4219 -1.0304 20 6 2.8674 -3.5037 -2.0261 21 6 2.7513 -4.7009 -2.6289 22 7 1.6979 -5.3886 -2.0979 23 6 1.2729 -6.7283 -2.5110 24 1 -0.3633 0.0536 1.0263 25 1 -0.3633 0.8620 -0.5595 26 1 -0.3635 -0.9156 -0.4666 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1383 0.5138 29 1 4.0302 4.4439 -0.8504 30 1 -0.0029 -1.9443 1.4428 31 1 -1.2218 -4.0676 1.2774 32 1 -0.5367 -5.7835 -0.3333 33 1 3.6078 -2.7466 -2.2384 34 1 3.3951 -5.0638 -3.4165 35 1 1.7928 -7.4754 -1.9112 36 1 0.1975 -6.8295 -2.3650 37 1 1.5125 -6.8769 -3.5638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608877904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:10 Heat of formation + Delta-G solvation = 14.499222 kcal Electronic energy + Delta-G solvation = -20467.984351 eV Core-core repulsion = 17403.336362 eV Total energy + Delta-G solvation = -3064.647989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32590 -40.55482 -37.74850 -36.61572 -34.74755 -33.76266 -31.75056 -30.01791 -29.52869 -27.46547 -27.01302 -25.55640 -23.67241 -22.54152 -21.84548 -19.89572 -18.71673 -18.15299 -17.83410 -17.16619 -16.78786 -16.38286 -16.19334 -16.10114 -15.87190 -14.76160 -14.60984 -14.24940 -14.11570 -13.85667 -13.65879 -13.58215 -13.48741 -13.18840 -13.04501 -12.86073 -12.58965 -12.48400 -12.37024 -12.21503 -12.05134 -11.75390 -10.75086 -10.66263 -10.48719 -9.47253 -9.15485 -8.56176 -8.24067 -6.39681 -0.13031 0.62088 1.34008 1.39206 1.46692 1.66390 1.84931 1.97869 2.31929 2.44287 2.93231 3.04667 3.60953 3.90558 3.95593 4.00279 4.21775 4.28086 4.42707 4.51685 4.56063 4.66339 4.67404 4.77639 4.83312 4.90375 4.95775 5.02795 5.09784 5.19517 5.46926 5.50492 5.54805 5.71338 5.75486 5.82650 6.03749 6.19702 6.43519 6.66071 6.72366 7.24162 7.41889 8.83074 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.005200 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.178917 B = 5383.238011 C = 6146.636421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.602 5.602 3 C 0.259 3.741 4 C -0.547 4.547 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.542 3.458 13 O -0.597 6.597 14 C -0.108 4.108 15 C -0.111 4.111 16 C -0.101 4.101 17 C -0.099 4.099 18 C 0.078 3.922 19 C -0.103 4.103 20 C -0.252 4.252 21 C 0.080 3.920 22 N -0.486 5.486 23 C 0.073 3.927 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.029 0.971 28 H -0.002 1.002 29 H 0.269 0.731 30 H 0.141 0.859 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.112 0.888 34 H 0.209 0.791 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.393 -22.452 -2.564 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.332 5.332 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.066 0.934 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.793 3.207 9 H -0.184 1.184 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.332 3.668 13 O -0.479 6.479 14 C -0.112 4.112 15 C -0.130 4.130 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.028 4.028 19 C -0.109 4.109 20 C -0.277 4.277 21 C -0.047 4.047 22 N -0.169 5.169 23 C -0.067 4.067 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.016 0.984 29 H 0.078 0.922 30 H 0.158 0.842 31 H 0.191 0.809 32 H 0.180 0.820 33 H 0.130 0.870 34 H 0.225 0.775 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.796 -22.589 -2.597 25.615 hybrid contribution 1.036 1.185 -0.668 1.710 sum -10.759 -21.404 -3.265 24.177 Atomic orbital electron populations 1.22087 0.78000 1.03667 1.02694 1.48096 1.08429 1.06096 1.70617 1.18802 0.91154 0.79991 0.96270 1.21626 1.37359 1.06737 0.92774 0.93385 1.25864 0.94647 0.96182 1.02252 1.70045 1.38675 1.14781 1.33142 0.85452 0.78916 0.77449 0.78895 1.18382 1.19798 1.20451 1.18942 0.86875 0.84896 0.76082 1.90685 1.16360 1.88183 1.52675 1.19363 0.98536 0.92914 1.00370 1.21393 0.93365 0.99556 0.98700 1.21130 1.00608 0.91498 0.98765 1.20567 0.94668 1.01583 0.95066 1.18416 0.98001 0.91060 0.95305 1.19285 0.98359 0.94605 0.98606 1.21755 1.02995 1.00153 1.02838 1.22245 0.91606 0.91260 0.99580 1.44061 1.25777 1.16390 1.30628 1.22301 1.02737 0.78733 1.02879 0.90361 0.91563 0.89548 0.95283 0.98378 0.92230 0.84166 0.80866 0.81962 0.86976 0.77468 0.89983 0.88385 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.72 9.09 127.77 1.16 3.88 16 2 N -0.60 -29.32 2.86 -855.10 -2.44 -31.76 16 3 C 0.26 15.18 5.21 85.64 0.45 15.63 16 4 C -0.55 -33.73 9.39 25.60 0.24 -33.49 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.58 5.46 84.65 0.46 1.05 16 7 N -0.93 -58.19 13.29 21.44 0.28 -57.90 16 8 Si 0.97 46.81 29.54 68.60 2.03 48.83 16 9 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 12 C 0.54 27.33 7.15 86.65 0.62 27.95 16 13 O -0.60 -36.17 16.48 -4.06 -0.07 -36.24 16 14 C -0.11 -4.26 4.92 -19.95 -0.10 -4.36 16 15 C -0.11 -3.14 7.60 22.54 0.17 -2.97 16 16 C -0.10 -2.01 9.99 22.24 0.22 -1.78 16 17 C -0.10 -1.94 9.93 22.41 0.22 -1.71 16 18 C 0.08 2.12 6.80 38.98 0.27 2.38 16 19 C -0.10 -3.87 6.13 -20.01 -0.12 -3.99 16 20 C -0.25 -9.43 10.84 23.44 0.25 -9.18 16 21 C 0.08 2.01 11.29 83.11 0.94 2.95 16 22 N -0.49 -10.45 3.17 -539.31 -1.71 -12.17 16 23 C 0.07 0.68 11.02 127.77 1.41 2.09 16 24 H 0.08 2.22 7.56 -2.39 -0.02 2.20 16 25 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 26 H 0.09 2.67 5.67 -2.39 -0.01 2.66 16 27 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 28 H 0.00 -0.13 7.37 -2.39 -0.02 -0.15 16 29 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 30 H 0.14 3.53 6.54 -2.91 -0.02 3.51 16 31 H 0.17 1.89 8.06 -2.92 -0.02 1.87 16 32 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.21 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.10 0.58 8.10 -2.39 -0.02 0.56 16 37 H 0.10 0.54 8.13 -2.39 -0.02 0.52 16 Total: -1.00 -88.25 317.50 5.35 -82.91 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.07 Total: 7.87 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 6.19 Total: -1.55 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.87 Total: -101.83 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.07 Total: -36.24 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -88.25 5.35 -82.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608877904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.405 kcal (2) G-P(sol) polarization free energy of solvation -88.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds