Wall clock time and date at job start Mon Mar 30 2020 01:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46913 * 2 1 4 4 C 1.50703 * 109.46912 * 119.99944 * 2 1 3 5 5 H 1.08003 * 119.99738 * 120.00106 * 4 2 1 6 6 C 1.37871 * 120.00113 * 299.99734 * 4 2 1 7 7 N 1.31525 * 119.99912 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46697 * 90.00337 * 8 6 4 10 10 H 1.48499 * 109.47088 * 210.00126 * 8 6 4 11 11 H 1.48496 * 109.46994 * 330.00345 * 8 6 4 12 12 N 1.46495 * 109.46953 * 239.99950 * 2 1 3 13 13 C 1.34782 * 120.00175 * 85.00015 * 12 2 1 14 14 O 1.21603 * 119.99678 * 0.02562 * 13 12 2 15 15 C 1.47382 * 120.00044 * 179.97438 * 13 12 2 16 16 C 1.39312 * 120.34149 * 0.02562 * 15 13 12 17 17 C 1.38277 * 120.19929 * 179.97438 * 16 15 13 18 18 C 1.38055 * 120.88070 * 0.02562 * 17 16 15 19 19 C 1.38974 * 120.27093 * 0.02562 * 18 17 16 20 20 C 1.40667 * 119.52336 * 359.97438 * 19 18 17 21 21 C 1.45983 * 106.13865 * 180.02562 * 20 19 18 22 22 C 1.34543 * 107.00953 * 0.02562 * 21 20 19 23 23 N 1.36552 * 109.89679 * 359.97438 * 22 21 20 24 24 C 1.46507 * 125.07291 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.47051 * 59.99978 * 1 2 3 26 26 H 1.09002 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47161 * 300.00331 * 1 2 3 28 28 H 0.96997 * 119.99450 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99828 * 264.99984 * 12 2 1 30 30 H 1.08002 * 119.90304 * 359.97207 * 16 15 13 31 31 H 1.08001 * 119.56045 * 179.97438 * 17 16 15 32 32 H 1.08007 * 119.86749 * 179.72503 * 18 17 16 33 33 H 1.08005 * 126.49843 * 180.02562 * 21 20 19 34 34 H 1.07999 * 125.05798 * 179.97438 * 22 21 20 35 35 H 1.09002 * 109.46814 * 89.98050 * 24 23 22 36 36 H 1.08996 * 109.46811 * 209.97327 * 24 23 22 37 37 H 1.08990 * 109.47300 * 329.97509 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4857 -2.5662 3.7119 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1617 -2.4116 15 6 2.6388 -0.7129 -3.5604 16 6 2.9721 -2.0645 -3.5058 17 6 3.4327 -2.7135 -4.6367 18 6 3.5709 -2.0395 -5.8336 19 6 3.2476 -0.6907 -5.9195 20 6 2.7777 -0.0165 -4.7778 21 6 2.5318 1.3614 -5.1928 22 6 2.8497 1.4422 -6.4976 23 7 3.2790 0.2264 -6.9474 24 6 3.7080 -0.0603 -8.3186 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7082 1.1609 3.4844 29 1 2.2490 -1.6318 -1.1525 30 1 2.8706 -2.6071 -2.5775 31 1 3.6886 -3.7613 -4.5826 32 1 3.9365 -2.5615 -6.7057 33 1 2.1644 2.1639 -4.5703 34 1 2.7764 2.3357 -7.0998 35 1 4.7797 0.1173 -8.4086 36 1 3.4911 -1.1015 -8.5569 37 1 3.1726 0.5899 -9.0103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608879556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:32 Heat of formation + Delta-G solvation = 4.808425 kcal Electronic energy + Delta-G solvation = -20136.252657 eV Core-core repulsion = 17071.184443 eV Total energy + Delta-G solvation = -3065.068214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.29074 -40.42794 -37.75529 -36.70366 -34.35204 -33.71543 -31.99855 -30.26653 -29.87974 -27.35557 -26.99932 -24.95051 -23.05218 -22.47299 -21.69421 -20.83639 -18.99120 -17.86545 -17.59757 -17.03648 -17.03423 -16.28086 -16.08000 -15.91064 -15.63983 -14.93168 -14.69340 -14.42786 -14.01499 -13.79139 -13.60924 -13.55926 -13.08682 -12.96673 -12.88382 -12.75529 -12.57477 -12.37150 -12.27217 -12.15600 -12.10276 -11.12284 -10.70587 -10.58356 -10.56517 -9.77098 -9.16866 -8.56268 -8.17265 -6.35485 -0.25448 0.60964 1.45208 1.46655 1.57556 1.72362 1.93224 2.08372 2.35951 2.63224 3.04325 3.13235 3.76000 3.93517 3.97844 4.03782 4.22746 4.30656 4.51859 4.57187 4.67267 4.74420 4.77685 4.87826 4.91630 4.99145 5.07989 5.15386 5.40606 5.46708 5.48926 5.59948 5.67266 5.75614 5.77501 5.92890 6.08354 6.21052 6.44524 6.71508 6.97401 7.31623 7.54563 8.89562 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.004091 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.161735 B = 6842.829632 C = 7384.564867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.977 3.023 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.258 1.258 12 N -0.700 5.700 13 C 0.537 3.463 14 O -0.594 6.594 15 C -0.121 4.121 16 C -0.106 4.106 17 C -0.109 4.109 18 C -0.092 4.092 19 C 0.070 3.930 20 C -0.094 4.094 21 C -0.241 4.241 22 C 0.074 3.926 23 N -0.486 5.486 24 C 0.073 3.927 25 H 0.008 0.992 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.139 0.861 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.124 0.876 34 H 0.209 0.791 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 -8.262 -22.371 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.181 1.181 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.477 6.477 15 C -0.125 4.125 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.112 4.112 19 C -0.036 4.036 20 C -0.100 4.100 21 C -0.266 4.266 22 C -0.052 4.052 23 N -0.169 5.169 24 C -0.067 4.067 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.157 0.843 31 H 0.188 0.812 32 H 0.180 0.820 33 H 0.142 0.858 34 H 0.226 0.774 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.643 -7.368 -22.599 24.681 hybrid contribution -0.047 0.073 1.390 1.393 sum 6.596 -7.295 -21.209 23.379 Atomic orbital electron populations 1.21892 0.98254 0.99482 0.99459 1.18373 0.91180 0.91895 0.81829 0.98575 1.21538 1.32720 1.13659 0.90698 0.90758 1.25858 0.94784 0.95613 1.02429 1.70071 1.36924 1.24026 1.24665 0.85276 0.77737 0.79222 0.77684 1.20339 1.20790 1.18145 1.46215 1.65095 1.14105 1.09515 1.18858 0.77805 0.86499 0.84225 1.90649 1.53299 1.17794 1.85937 1.19510 1.05780 0.95312 0.91879 1.21427 0.98653 0.91884 1.00650 1.21126 0.99564 1.01422 0.90643 1.20584 1.01038 0.89604 0.99970 1.18444 1.04687 0.92846 0.87582 1.19353 1.02895 0.95100 0.92671 1.21886 1.12479 0.95993 0.96213 1.22358 0.98701 0.89760 0.94406 1.44067 1.55762 1.07204 1.09902 1.22291 1.01876 1.04711 0.77809 0.97317 0.93986 0.91196 0.92490 0.76105 0.84316 0.81173 0.82032 0.85779 0.77389 0.90009 0.88608 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.19 9.26 71.98 0.67 -6.52 16 2 C 0.27 15.15 2.56 44.25 0.11 15.26 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.55 -30.42 8.73 25.60 0.22 -30.20 16 5 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -54.48 11.32 21.45 0.24 -54.23 16 8 Si 0.98 43.06 29.54 68.60 2.03 45.08 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 12 N -0.70 -32.94 5.02 -449.42 -2.26 -35.20 16 13 C 0.54 25.76 7.73 86.65 0.67 26.43 16 14 O -0.59 -33.34 14.75 -4.04 -0.06 -33.40 16 15 C -0.12 -4.65 5.90 -19.95 -0.12 -4.77 16 16 C -0.11 -3.06 9.53 22.54 0.21 -2.84 16 17 C -0.11 -2.25 9.99 22.24 0.22 -2.03 16 18 C -0.09 -1.82 9.93 22.40 0.22 -1.60 16 19 C 0.07 1.87 6.80 38.98 0.27 2.13 16 20 C -0.09 -3.42 6.15 -20.02 -0.12 -3.54 16 21 C -0.24 -8.45 10.24 23.43 0.24 -8.21 16 22 C 0.07 1.75 11.29 83.11 0.94 2.69 16 23 N -0.49 -10.02 3.17 -539.31 -1.71 -11.74 16 24 C 0.07 0.63 11.02 127.77 1.41 2.04 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 4.08 6.07 -2.39 -0.01 4.07 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.40 15.99 6.57 -92.71 -0.61 15.38 16 30 H 0.14 3.54 6.40 -2.91 -0.02 3.52 16 31 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.12 5.04 7.16 -2.91 -0.02 5.02 16 34 H 0.21 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 36 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16 37 H 0.10 0.47 8.13 -2.39 -0.02 0.45 16 Total: -1.00 -80.09 314.20 4.11 -75.97 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.48 Total: 23.51 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.39 Total: -10.00 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.73 Total: -101.17 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.06 Total: -33.40 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -80.09 4.11 -75.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608879556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.783 kcal (2) G-P(sol) polarization free energy of solvation -80.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds