Wall clock time and date at job start Mon Mar 30 2020 01:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47311 * 2 1 4 4 C 1.50703 * 109.46834 * 240.00238 * 2 1 3 5 5 H 1.07999 * 120.00286 * 239.99880 * 4 2 1 6 6 C 1.37876 * 120.00021 * 60.00010 * 4 2 1 7 7 N 1.31513 * 120.00231 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99954 * 8 6 4 10 10 H 1.48498 * 109.47136 * 210.00051 * 8 6 4 11 11 H 1.48502 * 109.46928 * 329.99566 * 8 6 4 12 12 N 1.46497 * 109.47249 * 120.00222 * 2 1 3 13 13 C 1.34773 * 120.00227 * 274.99829 * 12 2 1 14 14 O 1.21617 * 119.99803 * 359.97438 * 13 12 2 15 15 C 1.47375 * 120.00290 * 180.02562 * 13 12 2 16 16 C 1.39320 * 120.34158 * 359.97438 * 15 13 12 17 17 C 1.38269 * 120.19925 * 179.97438 * 16 15 13 18 18 C 1.38065 * 120.88272 * 0.04322 * 17 16 15 19 19 C 1.38974 * 120.27098 * 359.97438 * 18 17 16 20 20 C 1.40672 * 119.51981 * 359.97438 * 19 18 17 21 21 C 1.45983 * 106.13506 * 180.02562 * 20 19 18 22 22 C 1.34557 * 107.00764 * 0.02562 * 21 20 19 23 23 N 1.36542 * 109.89824 * 359.97438 * 22 21 20 24 24 C 1.46501 * 125.07518 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.47395 * 59.99490 * 1 2 3 26 26 H 1.09000 * 109.47311 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46511 * 300.00171 * 1 2 3 28 28 H 0.96998 * 120.00894 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99827 * 94.99860 * 12 2 1 30 30 H 1.08002 * 119.90086 * 0.02562 * 16 15 13 31 31 H 1.08001 * 119.55858 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.86280 * 179.70087 * 18 17 16 33 33 H 1.07996 * 126.49742 * 180.02562 * 21 20 19 34 34 H 1.07995 * 125.04907 * 179.97438 * 22 21 20 35 35 H 1.08996 * 109.46656 * 89.97854 * 24 23 22 36 36 H 1.09000 * 109.46908 * 209.97362 * 24 23 22 37 37 H 1.08997 * 109.46926 * 329.97882 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3211 -1.1202 -4.0081 9 1 1.3425 -2.1615 -4.4120 10 1 2.4863 -0.1412 -5.1123 11 1 3.6291 -1.7582 -3.7124 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8584 1.1617 2.4116 15 6 2.6389 -0.7130 3.5602 16 6 2.9723 -2.0646 3.5057 17 6 3.4340 -2.7133 4.6361 18 6 3.5719 -2.0394 5.8332 19 6 3.2472 -0.6909 5.9195 20 6 2.7772 -0.0167 4.7778 21 6 2.5310 1.3610 5.1929 22 6 2.8499 1.4420 6.4976 23 7 3.2790 0.2263 6.9474 24 6 3.7099 -0.0601 8.3181 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 0.7088 1.1616 -3.4843 29 1 2.2490 -1.6318 1.1525 30 1 2.8707 -2.6072 2.5774 31 1 3.6898 -3.7612 4.5821 32 1 3.9295 -2.5635 6.7073 33 1 2.1627 2.1633 4.5708 34 1 2.7773 2.3357 7.0996 35 1 2.8516 -0.3782 8.9097 36 1 4.4570 -0.8537 8.3057 37 1 4.1417 0.8387 8.7584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608879559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:35 Heat of formation + Delta-G solvation = 26.403929 kcal Electronic energy + Delta-G solvation = -20135.359580 eV Core-core repulsion = 17071.227818 eV Total energy + Delta-G solvation = -3064.131762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23993 -38.75324 -36.60694 -34.71498 -32.75470 -32.37536 -30.61310 -28.92958 -28.40454 -26.20584 -25.19731 -23.56573 -21.59672 -21.33569 -20.15517 -19.20735 -17.49601 -16.64355 -16.12514 -15.69878 -15.40522 -15.13456 -14.92031 -14.25854 -13.97379 -13.69791 -13.31433 -12.88728 -12.73895 -12.66267 -12.34925 -12.31960 -11.65090 -11.50667 -11.22566 -11.20938 -11.04940 -10.88597 -10.65576 -10.26375 -10.17851 -9.45026 -8.98097 -8.91781 -8.49471 -8.12291 -7.85477 -7.46891 -6.06917 -4.15868 0.91977 1.66727 2.79195 2.84213 3.28149 3.34753 3.37302 3.49660 4.16069 4.38512 4.43334 4.58519 4.76801 4.90224 4.94460 5.06155 5.19359 5.21647 5.25447 5.46323 5.61162 5.69674 5.94031 6.05614 6.29138 6.52616 6.57350 6.79780 6.88158 6.94862 7.05421 7.22748 7.25813 7.33592 7.54678 7.64995 7.77166 7.99383 8.21319 8.75622 8.85482 9.22712 9.51759 10.99142 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.004091 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.185287 B = 6842.749765 C = 7384.541972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.703 5.703 13 C 0.542 3.458 14 O -0.547 6.547 15 C -0.073 4.073 16 C -0.116 4.116 17 C -0.107 4.107 18 C -0.117 4.117 19 C 0.085 3.915 20 C -0.062 4.062 21 C -0.175 4.175 22 C 0.035 3.965 23 N -0.493 5.493 24 C 0.083 3.917 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.015 0.985 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -5.086 19.725 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.351 5.351 13 C 0.328 3.672 14 O -0.426 6.426 15 C -0.077 4.077 16 C -0.136 4.136 17 C -0.126 4.126 18 C -0.138 4.138 19 C -0.020 4.020 20 C -0.068 4.068 21 C -0.199 4.199 22 C -0.088 4.088 23 N -0.178 5.178 24 C -0.059 4.059 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.176 0.824 34 H 0.185 0.815 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.017 -4.130 19.905 20.939 hybrid contribution 0.419 -0.960 -0.771 1.300 sum 5.436 -5.090 19.134 20.532 Atomic orbital electron populations 1.22075 0.98437 0.99110 1.00907 1.18753 0.91035 0.94058 0.79895 0.93239 1.21231 1.32350 1.13178 0.90350 0.92077 1.24884 0.94860 0.94948 0.99018 1.69904 1.35980 1.22432 1.23810 0.86452 0.79169 0.79263 0.82236 1.20574 1.21104 1.19842 1.46483 1.64735 1.13523 1.10391 1.18104 0.78995 0.86861 0.83231 1.90695 1.51278 1.15571 1.85101 1.19757 1.01113 0.93589 0.93196 1.21178 1.00091 0.93421 0.98905 1.20675 1.00486 0.99608 0.91809 1.20026 1.04359 0.90770 0.98615 1.18178 1.04214 0.91695 0.87898 1.19011 1.01974 0.94205 0.91574 1.22003 1.07719 0.96219 0.94007 1.21890 1.02816 0.88367 0.95756 1.43693 1.57408 1.08214 1.08526 1.21862 1.00512 1.02878 0.80680 0.89160 0.95501 0.96576 0.92620 0.77902 0.85290 0.85402 0.86510 0.82382 0.81517 0.91598 0.90401 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 2 C 0.26 6.98 2.56 -69.08 -0.18 6.80 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 4 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 12 N -0.70 -15.68 5.02 -56.03 -0.28 -15.96 16 13 C 0.54 12.04 7.73 -12.54 -0.10 11.94 16 14 O -0.55 -13.86 14.75 5.26 0.08 -13.78 16 15 C -0.07 -1.34 5.90 -104.75 -0.62 -1.96 16 16 C -0.12 -1.73 9.53 -39.17 -0.37 -2.10 16 17 C -0.11 -1.30 9.99 -39.63 -0.40 -1.70 16 18 C -0.12 -1.42 9.93 -39.37 -0.39 -1.81 16 19 C 0.09 1.23 6.80 -83.99 -0.57 0.66 16 20 C -0.06 -1.09 6.15 -104.85 -0.64 -1.73 16 21 C -0.17 -2.87 10.24 -37.78 -0.39 -3.25 16 22 C 0.04 0.44 11.29 -16.76 -0.19 0.25 16 23 N -0.49 -5.85 3.17 -121.82 -0.39 -6.24 16 24 C 0.08 0.57 11.02 59.85 0.66 1.23 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.39 7.49 6.57 -40.82 -0.27 7.22 16 30 H 0.13 1.72 6.40 -52.49 -0.34 1.38 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.05 8.05 -52.49 -0.42 0.63 16 33 H 0.16 2.79 7.16 -52.49 -0.38 2.42 16 34 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -33.34 314.20 -8.09 -41.43 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.61 Total: 6.73 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.23 Total: -8.15 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.04 Total: -46.87 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.08 Total: -13.78 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.34 -8.09 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608879559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.838 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds