Wall clock time and date at job start Mon Mar 30 2020 01:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47311 * 2 1 4 4 C 1.50703 * 109.46834 * 240.00238 * 2 1 3 5 5 H 1.07999 * 120.00286 * 239.99880 * 4 2 1 6 6 C 1.37876 * 120.00021 * 60.00010 * 4 2 1 7 7 N 1.31513 * 120.00231 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99954 * 8 6 4 10 10 H 1.48498 * 109.47136 * 210.00051 * 8 6 4 11 11 H 1.48502 * 109.46928 * 329.99566 * 8 6 4 12 12 N 1.46497 * 109.47249 * 120.00222 * 2 1 3 13 13 C 1.34773 * 120.00227 * 274.99829 * 12 2 1 14 14 O 1.21617 * 119.99803 * 359.97438 * 13 12 2 15 15 C 1.47375 * 120.00290 * 180.02562 * 13 12 2 16 16 C 1.39320 * 120.34158 * 359.97438 * 15 13 12 17 17 C 1.38269 * 120.19925 * 179.97438 * 16 15 13 18 18 C 1.38065 * 120.88272 * 0.04322 * 17 16 15 19 19 C 1.38974 * 120.27098 * 359.97438 * 18 17 16 20 20 C 1.40672 * 119.51981 * 359.97438 * 19 18 17 21 21 C 1.45983 * 106.13506 * 180.02562 * 20 19 18 22 22 C 1.34557 * 107.00764 * 0.02562 * 21 20 19 23 23 N 1.36542 * 109.89824 * 359.97438 * 22 21 20 24 24 C 1.46501 * 125.07518 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.47395 * 59.99490 * 1 2 3 26 26 H 1.09000 * 109.47311 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46511 * 300.00171 * 1 2 3 28 28 H 0.96998 * 120.00894 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99827 * 94.99860 * 12 2 1 30 30 H 1.08002 * 119.90086 * 0.02562 * 16 15 13 31 31 H 1.08001 * 119.55858 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.86280 * 179.70087 * 18 17 16 33 33 H 1.07996 * 126.49742 * 180.02562 * 21 20 19 34 34 H 1.07995 * 125.04907 * 179.97438 * 22 21 20 35 35 H 1.08996 * 109.46656 * 89.97854 * 24 23 22 36 36 H 1.09000 * 109.46908 * 209.97362 * 24 23 22 37 37 H 1.08997 * 109.46926 * 329.97882 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3211 -1.1202 -4.0081 9 1 1.3425 -2.1615 -4.4120 10 1 2.4863 -0.1412 -5.1123 11 1 3.6291 -1.7582 -3.7124 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8584 1.1617 2.4116 15 6 2.6389 -0.7130 3.5602 16 6 2.9723 -2.0646 3.5057 17 6 3.4340 -2.7133 4.6361 18 6 3.5719 -2.0394 5.8332 19 6 3.2472 -0.6909 5.9195 20 6 2.7772 -0.0167 4.7778 21 6 2.5310 1.3610 5.1929 22 6 2.8499 1.4420 6.4976 23 7 3.2790 0.2263 6.9474 24 6 3.7099 -0.0601 8.3181 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 0.7088 1.1616 -3.4843 29 1 2.2490 -1.6318 1.1525 30 1 2.8707 -2.6072 2.5774 31 1 3.6898 -3.7612 4.5821 32 1 3.9295 -2.5635 6.7073 33 1 2.1627 2.1633 4.5708 34 1 2.7773 2.3357 7.0996 35 1 2.8516 -0.3782 8.9097 36 1 4.4570 -0.8537 8.3057 37 1 4.1417 0.8387 8.7584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608879559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:35 Heat of formation + Delta-G solvation = 4.784095 kcal Electronic energy + Delta-G solvation = -20136.297086 eV Core-core repulsion = 17071.227818 eV Total energy + Delta-G solvation = -3065.069269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.29060 -40.42690 -37.75497 -36.70309 -34.35329 -33.71524 -31.99930 -30.26762 -29.87965 -27.35556 -26.99930 -24.95098 -23.05273 -22.47269 -21.69448 -20.83666 -18.99138 -17.86554 -17.59770 -17.03692 -17.03405 -16.28801 -16.06568 -15.92191 -15.63616 -14.93130 -14.69709 -14.42738 -14.01763 -13.78186 -13.62105 -13.55410 -13.08718 -12.99266 -12.86527 -12.71978 -12.57777 -12.37245 -12.28816 -12.15379 -12.12306 -11.11358 -10.70720 -10.58322 -10.56684 -9.77067 -9.16890 -8.56205 -8.17226 -6.35480 -0.25505 0.60964 1.45119 1.46773 1.57497 1.72333 1.93226 2.08351 2.35989 2.63196 3.04318 3.13207 3.75995 3.93518 3.97804 4.03775 4.22725 4.30656 4.51891 4.57187 4.67235 4.74347 4.77657 4.87777 4.91563 4.99125 5.07902 5.15416 5.40588 5.46686 5.48918 5.59904 5.67182 5.75602 5.77507 5.92900 6.08273 6.21045 6.44528 6.71491 6.97391 7.31628 7.54553 8.89594 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.004091 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.185287 B = 6842.749765 C = 7384.541972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.003 1.003 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.977 3.023 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.700 5.700 13 C 0.537 3.463 14 O -0.594 6.594 15 C -0.121 4.121 16 C -0.106 4.106 17 C -0.109 4.109 18 C -0.092 4.092 19 C 0.070 3.930 20 C -0.094 4.094 21 C -0.241 4.241 22 C 0.074 3.926 23 N -0.486 5.486 24 C 0.073 3.927 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.008 0.992 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.139 0.861 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.124 0.876 34 H 0.209 0.791 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.010 -8.200 22.317 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.477 6.477 15 C -0.125 4.125 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.112 4.112 19 C -0.036 4.036 20 C -0.100 4.100 21 C -0.266 4.266 22 C -0.052 4.052 23 N -0.169 5.169 24 C -0.067 4.067 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.157 0.843 31 H 0.188 0.812 32 H 0.180 0.820 33 H 0.142 0.858 34 H 0.226 0.774 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.823 -7.300 22.545 24.660 hybrid contribution -0.102 0.045 -1.379 1.383 sum 6.721 -7.255 21.167 23.363 Atomic orbital electron populations 1.21893 0.98268 0.99471 0.99462 1.18373 0.91164 0.91907 0.81825 0.98553 1.21535 1.32762 1.13635 0.90701 0.90775 1.25855 0.94812 0.95573 1.02426 1.70062 1.37008 1.23931 1.24679 0.85273 0.79015 0.78006 0.77607 1.19409 1.21144 1.18738 1.46213 1.65084 1.14106 1.09519 1.18857 0.77804 0.86503 0.84225 1.90653 1.53309 1.17787 1.85943 1.19511 1.05787 0.95312 0.91879 1.21427 0.98660 0.91882 1.00646 1.21126 0.99560 1.01420 0.90653 1.20585 1.01034 0.89611 0.99963 1.18445 1.04698 0.92878 0.87544 1.19354 1.02905 0.95093 0.92660 1.21888 1.12492 0.96000 0.96196 1.22359 0.98729 0.89785 0.94351 1.44063 1.55758 1.07189 1.09918 1.22292 1.01784 1.04891 0.77723 0.91193 0.94003 0.97318 0.92482 0.76105 0.84315 0.81172 0.82032 0.85779 0.77388 0.89965 0.88628 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.20 9.26 71.98 0.67 -6.53 16 2 C 0.27 15.15 2.56 44.25 0.11 15.27 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.24 16 4 C -0.55 -30.44 8.73 25.60 0.22 -30.22 16 5 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.46 11.32 21.45 0.24 -54.22 16 8 Si 0.98 43.06 29.54 68.60 2.03 45.09 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 12 N -0.70 -32.95 5.02 -449.42 -2.26 -35.21 16 13 C 0.54 25.76 7.73 86.65 0.67 26.43 16 14 O -0.59 -33.35 14.75 -4.08 -0.06 -33.41 16 15 C -0.12 -4.66 5.90 -19.95 -0.12 -4.78 16 16 C -0.11 -3.06 9.53 22.54 0.21 -2.85 16 17 C -0.11 -2.25 9.99 22.24 0.22 -2.03 16 18 C -0.09 -1.82 9.93 22.41 0.22 -1.60 16 19 C 0.07 1.87 6.80 38.98 0.27 2.13 16 20 C -0.09 -3.42 6.15 -20.01 -0.12 -3.54 16 21 C -0.24 -8.46 10.24 23.43 0.24 -8.22 16 22 C 0.07 1.75 11.29 83.12 0.94 2.69 16 23 N -0.49 -10.02 3.17 -539.31 -1.71 -11.74 16 24 C 0.07 0.63 11.02 127.77 1.41 2.04 16 25 H 0.07 4.08 6.07 -2.39 -0.01 4.07 16 26 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.40 15.99 6.57 -92.71 -0.61 15.38 16 30 H 0.14 3.54 6.40 -2.91 -0.02 3.52 16 31 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.16 1.79 8.05 -2.91 -0.02 1.76 16 33 H 0.12 5.05 7.16 -2.91 -0.02 5.02 16 34 H 0.21 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16 37 H 0.10 0.47 8.13 -2.39 -0.02 0.45 16 Total: -1.00 -80.09 314.20 4.11 -75.98 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.48 Total: 23.51 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.39 Total: -10.01 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -3.72 Total: -101.16 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.06 Total: -33.41 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -80.09 4.11 -75.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608879559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.762 kcal (2) G-P(sol) polarization free energy of solvation -80.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds