Wall clock time and date at job start Mon Mar 30 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46766 * 2 1 4 4 C 1.50704 * 109.47129 * 240.00344 * 2 1 3 5 5 H 1.08001 * 119.99988 * 275.00152 * 4 2 1 6 6 C 1.37872 * 120.00019 * 94.99343 * 4 2 1 7 7 N 1.31512 * 120.00119 * 184.91539 * 6 4 2 8 8 Si 1.86802 * 120.00241 * 4.91928 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.82640 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83087 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.82873 * 8 6 4 12 12 N 1.46894 * 109.47082 * 120.00213 * 2 1 3 13 13 C 1.46897 * 111.00227 * 275.00188 * 12 2 1 14 14 C 1.50698 * 109.47069 * 180.02562 * 13 12 2 15 15 C 1.41005 * 126.70557 * 94.71115 * 14 13 12 16 16 C 1.36830 * 103.88009 * 179.85326 * 15 14 13 17 17 C 1.47847 * 126.92221 * 180.12867 * 16 15 14 18 18 C 1.39560 * 120.14650 * 0.02562 * 17 16 15 19 19 C 1.37963 * 119.85647 * 179.74110 * 18 17 16 20 20 C 1.38359 * 120.13757 * 0.51083 * 19 18 17 21 21 C 1.38355 * 120.29460 * 359.76788 * 20 19 18 22 22 C 1.37958 * 120.14295 * 359.97062 * 21 20 19 23 23 O 1.34491 * 106.14793 * 0.39941 * 16 15 14 24 24 N 1.20894 * 111.45131 * 359.72566 * 23 16 15 25 25 H 1.08997 * 109.47027 * 295.04363 * 1 2 3 26 26 H 1.09001 * 109.47070 * 175.03926 * 1 2 3 27 27 H 1.08994 * 109.47083 * 55.04381 * 1 2 3 28 28 H 0.96998 * 120.00203 * 180.02562 * 7 6 4 29 29 H 1.00901 * 111.00172 * 38.95386 * 12 2 1 30 30 H 1.09004 * 109.46629 * 299.99688 * 13 12 2 31 31 H 1.08994 * 109.47066 * 59.99740 * 13 12 2 32 32 H 1.08002 * 128.05562 * 0.02562 * 15 14 13 33 33 H 1.08006 * 120.07230 * 0.02562 * 18 17 16 34 34 H 1.07993 * 119.93341 * 180.27621 * 19 18 17 35 35 H 1.08003 * 119.85013 * 179.74205 * 20 19 18 36 36 H 1.07998 * 119.93011 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.07360 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3134 1.8792 -2.3175 9 1 3.5989 2.3950 -1.7822 10 1 2.1055 2.3992 -3.6928 11 1 1.1984 2.3275 -1.4450 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5885 -0.5217 3.5556 15 6 3.9227 -0.5879 4.0071 16 6 3.8521 -1.3723 5.1260 17 6 4.9730 -1.7690 6.0047 18 6 6.2696 -1.3345 5.7262 19 6 7.3103 -1.7038 6.5532 20 6 7.0722 -2.5119 7.6508 21 6 5.7900 -2.9508 7.9293 22 6 4.7397 -2.5842 7.1133 23 8 2.5586 -1.7146 5.2618 24 7 1.8796 -1.2342 4.3845 25 1 -0.3633 0.4350 0.9310 26 1 -0.3633 -1.0238 -0.0889 27 1 -0.3633 0.5888 -0.8422 28 1 2.9368 -0.1047 -4.2554 29 1 1.4496 -1.4980 1.4100 30 1 2.7589 1.0460 2.1182 31 1 1.0871 0.6161 2.5525 32 1 4.7963 -0.1247 3.5726 33 1 6.4573 -0.7067 4.8676 34 1 8.3134 -1.3646 6.3413 35 1 7.8910 -2.8016 8.2927 36 1 5.6109 -3.5817 8.7873 37 1 3.7392 -2.9272 7.3319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609030552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:00 Heat of formation + Delta-G solvation = 85.627202 kcal Electronic energy + Delta-G solvation = -19461.904233 eV Core-core repulsion = 16400.340584 eV Total energy + Delta-G solvation = -3061.563648 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.75384 -39.31291 -36.63188 -34.17040 -33.27501 -32.12281 -31.25313 -29.61316 -29.43883 -25.52140 -24.98933 -23.86449 -23.10549 -22.03604 -20.07884 -19.99756 -18.07201 -17.47549 -16.93151 -16.45190 -15.74509 -15.14556 -14.80878 -14.52886 -14.11636 -13.77128 -13.74876 -13.36489 -13.20122 -12.90324 -12.49537 -12.18575 -12.06993 -11.74362 -11.47905 -11.36415 -11.07080 -10.95225 -10.73575 -10.35392 -10.28089 -9.95671 -9.71864 -9.27105 -9.19647 -8.54303 -8.46667 -7.48068 -6.06755 -4.04384 0.48358 1.09434 1.90645 2.41218 3.00723 3.26873 3.34296 3.35213 3.56808 4.29265 4.34562 4.40224 4.63588 4.68314 4.80085 5.04701 5.07947 5.13790 5.18659 5.34054 5.43823 5.53593 5.61709 5.72340 5.86201 5.93471 6.13629 6.16395 6.18616 6.20642 6.25682 6.35790 6.56802 6.60951 6.74824 7.11270 7.64747 7.87431 8.25332 8.36971 8.63665 9.01293 9.55203 11.06846 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.003506 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.864784 B = 7984.332327 C = 8500.804259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.181 3.819 3 H 0.038 0.962 4 C -0.492 4.492 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.668 5.668 13 C 0.129 3.871 14 C 0.039 3.961 15 C -0.191 4.191 16 C -0.007 4.007 17 C -0.013 4.013 18 C -0.092 4.092 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.098 4.098 23 O 0.104 5.896 24 N -0.362 5.362 25 H 0.021 0.979 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.332 0.668 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.174 0.826 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -0.402 22.589 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.073 3.927 3 H 0.056 0.944 4 C -0.531 4.531 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.299 5.299 13 C -0.001 4.001 14 C -0.119 4.119 15 C -0.213 4.213 16 C -0.071 4.071 17 C -0.014 4.014 18 C -0.110 4.110 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.116 4.116 23 O 0.035 5.965 24 N -0.065 5.065 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.191 0.809 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.643 -0.572 22.273 23.249 hybrid contribution -0.195 1.368 -0.202 1.397 sum 6.448 0.796 22.070 23.007 Atomic orbital electron populations 1.22653 1.00772 1.00988 0.98760 1.19689 0.89588 0.94699 0.88744 0.94362 1.20834 1.42816 0.95753 0.93651 0.90547 1.24975 0.94716 0.98086 0.95361 1.69888 1.46502 1.35682 1.01697 0.86904 0.78923 0.86714 0.77154 1.20088 1.21464 1.19281 1.61024 1.58348 1.08608 1.01921 1.20351 0.99179 0.94561 0.86036 1.23573 0.90952 0.99157 0.98219 1.22596 0.98743 1.03558 0.96390 1.22439 0.85833 1.00783 0.98008 1.17645 0.89726 0.99652 0.94396 1.21174 0.90881 0.99301 0.99671 1.21087 0.99034 0.98416 0.95008 1.21315 0.97062 0.97343 0.97353 1.21101 0.92618 1.00257 0.99737 1.21318 1.00021 0.96580 0.93715 1.84873 1.15543 1.55747 1.40301 1.73791 1.19159 1.12760 1.00836 0.96043 0.93125 0.93009 0.92620 0.85067 0.89319 0.94258 0.80897 0.85092 0.85285 0.85728 0.85473 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 9.16 37.16 0.34 -3.33 16 2 C 0.18 4.25 2.23 -68.86 -0.15 4.09 16 3 H 0.04 0.91 4.95 -51.93 -0.26 0.65 16 4 C -0.49 -13.85 9.19 -34.44 -0.32 -14.17 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 8 Si 0.88 21.30 26.99 -169.99 -4.59 16.71 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.20 6.82 56.52 0.39 -5.81 16 12 N -0.67 -14.12 6.22 -109.23 -0.68 -14.80 16 13 C 0.13 2.29 6.07 -4.98 -0.03 2.26 16 14 C 0.04 0.65 6.82 -82.21 -0.56 0.09 16 15 C -0.19 -2.74 10.48 -39.04 -0.41 -3.15 16 16 C -0.01 -0.10 7.16 -36.16 -0.26 -0.36 16 17 C -0.01 -0.14 5.87 -104.98 -0.62 -0.76 16 18 C -0.09 -0.87 9.59 -39.19 -0.38 -1.25 16 19 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 20 C -0.11 -0.82 10.04 -39.49 -0.40 -1.21 16 21 C -0.12 -0.93 10.03 -39.64 -0.40 -1.32 16 22 C -0.10 -0.94 9.74 -39.19 -0.38 -1.32 16 23 O 0.10 1.57 11.04 15.97 0.18 1.74 16 24 N -0.36 -6.15 12.05 33.50 0.40 -5.75 16 25 H 0.02 0.40 7.35 -51.93 -0.38 0.01 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.33 6.94 8.47 -39.29 -0.33 6.60 16 30 H 0.09 1.49 8.06 -51.93 -0.42 1.07 16 31 H 0.04 0.68 7.36 -51.93 -0.38 0.30 16 32 H 0.17 2.08 7.47 -52.49 -0.39 1.69 16 33 H 0.13 1.10 7.16 -52.48 -0.38 0.73 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 1.14 7.96 -52.49 -0.42 0.72 16 LS Contribution 318.80 15.07 4.80 4.80 Total: -1.00 -31.58 318.80 -7.81 -39.39 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.65 Total: 4.44 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -4.05 Total: -19.84 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.50 Total: -47.25 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.18 Total: 1.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.59 Total: 16.71 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.58 -7.81 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.012 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds