Wall clock time and date at job start Mon Mar 30 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46766 * 2 1 4 4 C 1.50704 * 109.47129 * 240.00344 * 2 1 3 5 5 H 1.08001 * 119.99988 * 275.00152 * 4 2 1 6 6 C 1.37872 * 120.00019 * 94.99343 * 4 2 1 7 7 N 1.31512 * 120.00119 * 184.91539 * 6 4 2 8 8 Si 1.86802 * 120.00241 * 4.91928 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.82640 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83087 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.82873 * 8 6 4 12 12 N 1.46894 * 109.47082 * 120.00213 * 2 1 3 13 13 C 1.46897 * 111.00227 * 275.00188 * 12 2 1 14 14 C 1.50698 * 109.47069 * 180.02562 * 13 12 2 15 15 C 1.41005 * 126.70557 * 94.71115 * 14 13 12 16 16 C 1.36830 * 103.88009 * 179.85326 * 15 14 13 17 17 C 1.47847 * 126.92221 * 180.12867 * 16 15 14 18 18 C 1.39560 * 120.14650 * 0.02562 * 17 16 15 19 19 C 1.37963 * 119.85647 * 179.74110 * 18 17 16 20 20 C 1.38359 * 120.13757 * 0.51083 * 19 18 17 21 21 C 1.38355 * 120.29460 * 359.76788 * 20 19 18 22 22 C 1.37958 * 120.14295 * 359.97062 * 21 20 19 23 23 O 1.34491 * 106.14793 * 0.39941 * 16 15 14 24 24 N 1.20894 * 111.45131 * 359.72566 * 23 16 15 25 25 H 1.08997 * 109.47027 * 295.04363 * 1 2 3 26 26 H 1.09001 * 109.47070 * 175.03926 * 1 2 3 27 27 H 1.08994 * 109.47083 * 55.04381 * 1 2 3 28 28 H 0.96998 * 120.00203 * 180.02562 * 7 6 4 29 29 H 1.00901 * 111.00172 * 38.95386 * 12 2 1 30 30 H 1.09004 * 109.46629 * 299.99688 * 13 12 2 31 31 H 1.08994 * 109.47066 * 59.99740 * 13 12 2 32 32 H 1.08002 * 128.05562 * 0.02562 * 15 14 13 33 33 H 1.08006 * 120.07230 * 0.02562 * 18 17 16 34 34 H 1.07993 * 119.93341 * 180.27621 * 19 18 17 35 35 H 1.08003 * 119.85013 * 179.74205 * 20 19 18 36 36 H 1.07998 * 119.93011 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.07360 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3134 1.8792 -2.3175 9 1 3.5989 2.3950 -1.7822 10 1 2.1055 2.3992 -3.6928 11 1 1.1984 2.3275 -1.4450 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5885 -0.5217 3.5556 15 6 3.9227 -0.5879 4.0071 16 6 3.8521 -1.3723 5.1260 17 6 4.9730 -1.7690 6.0047 18 6 6.2696 -1.3345 5.7262 19 6 7.3103 -1.7038 6.5532 20 6 7.0722 -2.5119 7.6508 21 6 5.7900 -2.9508 7.9293 22 6 4.7397 -2.5842 7.1133 23 8 2.5586 -1.7146 5.2618 24 7 1.8796 -1.2342 4.3845 25 1 -0.3633 0.4350 0.9310 26 1 -0.3633 -1.0238 -0.0889 27 1 -0.3633 0.5888 -0.8422 28 1 2.9368 -0.1047 -4.2554 29 1 1.4496 -1.4980 1.4100 30 1 2.7589 1.0460 2.1182 31 1 1.0871 0.6161 2.5525 32 1 4.7963 -0.1247 3.5726 33 1 6.4573 -0.7067 4.8676 34 1 8.3134 -1.3646 6.3413 35 1 7.8910 -2.8016 8.2927 36 1 5.6109 -3.5817 8.7873 37 1 3.7392 -2.9272 7.3319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609030552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:00 Heat of formation + Delta-G solvation = 65.620388 kcal Electronic energy + Delta-G solvation = -19462.771793 eV Core-core repulsion = 16400.340584 eV Total energy + Delta-G solvation = -3062.431209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.93283 -39.97381 -38.28173 -35.58704 -34.38482 -33.95275 -31.92303 -31.14567 -30.45768 -27.32431 -26.69724 -24.78975 -23.97725 -22.88002 -21.95927 -21.07489 -19.29978 -18.76747 -18.65496 -17.25693 -16.81656 -16.48229 -16.19577 -15.81047 -15.51438 -15.02087 -14.67814 -14.52204 -14.28023 -14.13563 -13.90970 -13.81001 -13.58376 -13.14305 -12.93597 -12.61223 -12.40915 -12.16968 -12.05712 -11.92634 -11.78266 -11.30672 -11.24611 -11.16302 -10.69250 -9.90843 -9.32941 -9.14563 -8.26472 -6.30041 -0.35638 0.46031 0.86659 1.32169 1.36448 1.37977 1.47655 1.98679 2.35897 2.89042 2.99825 3.11465 3.35045 3.69196 3.90347 4.03371 4.06527 4.19225 4.27082 4.31913 4.38568 4.51608 4.52794 4.64133 4.67871 4.74218 4.76424 4.93416 4.99330 5.03684 5.12302 5.37442 5.48954 5.50929 5.57353 5.64046 5.97220 6.00031 6.54341 6.58974 6.74825 7.20706 7.34004 8.91122 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.003506 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.864784 B = 7984.332327 C = 8500.804259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.185 3.815 3 H 0.046 0.954 4 C -0.500 4.500 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.945 3.055 9 H -0.264 1.264 10 H -0.287 1.287 11 H -0.243 1.243 12 N -0.680 5.680 13 C 0.134 3.866 14 C 0.023 3.977 15 C -0.206 4.206 16 C 0.007 3.993 17 C -0.044 4.044 18 C -0.099 4.099 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.108 4.108 23 O 0.100 5.900 24 N -0.386 5.386 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.266 0.734 29 H 0.330 0.670 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.192 0.808 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 1.020 25.034 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.077 3.923 3 H 0.063 0.937 4 C -0.539 4.539 5 H 0.046 0.954 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.768 3.232 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.167 1.167 12 N -0.312 5.312 13 C 0.004 3.996 14 C -0.134 4.134 15 C -0.227 4.227 16 C -0.056 4.056 17 C -0.045 4.045 18 C -0.118 4.118 19 C -0.139 4.139 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.126 4.126 23 O 0.032 5.968 24 N -0.090 5.090 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.209 0.791 33 H 0.155 0.845 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.812 0.845 24.753 25.970 hybrid contribution -0.447 0.751 -0.809 1.191 sum 7.365 1.596 23.943 25.101 Atomic orbital electron populations 1.22514 0.98967 1.00920 1.00162 1.19509 0.90792 0.94286 0.87750 0.93651 1.21085 1.42780 0.93895 0.96114 0.95429 1.25899 0.94308 1.03874 0.94652 1.70055 1.48385 1.38036 1.02694 0.85786 0.80113 0.79618 0.77645 1.18934 1.21347 1.16695 1.60777 1.58400 1.09244 1.02732 1.20324 1.00016 0.94172 0.85082 1.23548 0.92043 0.99644 0.98154 1.22811 0.98475 1.04520 0.96932 1.22900 0.85570 0.99328 0.97788 1.17786 0.89543 1.01858 0.95316 1.21383 0.90691 0.99385 1.00320 1.21437 0.99655 0.98100 0.94713 1.21752 0.97688 0.95825 0.97031 1.21435 0.92352 1.00143 1.00007 1.21493 1.00936 0.96494 0.93710 1.84826 1.16400 1.55643 1.39922 1.73765 1.20086 1.13615 1.01563 0.93087 0.93781 0.93299 0.92508 0.85268 0.88134 0.93499 0.79077 0.84522 0.82874 0.82745 0.82995 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.86 9.16 71.98 0.66 -6.20 16 2 C 0.19 8.57 2.23 44.17 0.10 8.67 16 3 H 0.05 2.04 4.95 -2.39 -0.01 2.03 16 4 C -0.50 -28.86 9.19 25.60 0.24 -28.63 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.56 5.47 84.65 0.46 1.02 16 7 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 8 Si 0.94 43.43 26.99 68.60 1.85 45.28 16 9 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.24 -10.16 6.82 99.48 0.68 -9.48 16 12 N -0.68 -28.65 6.22 -499.48 -3.11 -31.76 16 13 C 0.13 4.59 6.07 85.56 0.52 5.11 16 14 C 0.02 0.77 6.82 43.47 0.30 1.07 16 15 C -0.21 -5.78 10.48 22.62 0.24 -5.55 16 16 C 0.01 0.20 7.16 24.49 0.18 0.37 16 17 C -0.04 -0.93 5.87 -20.09 -0.12 -1.05 16 18 C -0.10 -1.73 9.59 22.52 0.22 -1.51 16 19 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 20 C -0.10 -1.16 10.04 22.33 0.22 -0.94 16 21 C -0.12 -1.56 10.03 22.23 0.22 -1.34 16 22 C -0.11 -1.93 9.74 22.52 0.22 -1.71 16 23 O 0.10 3.03 11.04 67.32 0.74 3.77 16 24 N -0.39 -13.13 12.05 -48.86 -0.59 -13.72 16 25 H 0.05 1.79 7.35 -2.39 -0.02 1.78 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.33 13.99 8.47 -89.69 -0.76 13.23 16 30 H 0.10 3.18 8.06 -2.38 -0.02 3.16 16 31 H 0.05 1.54 7.36 -2.39 -0.02 1.52 16 32 H 0.19 4.41 7.47 -2.91 -0.02 4.39 16 33 H 0.14 2.11 7.16 -2.91 -0.02 2.09 16 34 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 36 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 37 H 0.13 2.21 7.96 -2.91 -0.02 2.19 16 Total: -1.00 -70.10 318.80 3.17 -66.93 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.30 Total: 21.05 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.67 Total: -32.02 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.40 Total: -105.02 kcal Atomic # 8 Polarization: 3.03 SS G_CDS: 0.74 Total: 3.77 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.85 Total: 45.28 kcal Total: -70.10 3.17 -66.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.548 kcal (2) G-P(sol) polarization free energy of solvation -70.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds