Wall clock time and date at job start Mon Mar 30 2020 01:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47149 * 2 1 4 4 C 1.50703 * 109.47050 * 240.00243 * 2 1 3 5 5 H 1.08000 * 119.99675 * 274.99634 * 4 2 1 6 6 C 1.37871 * 120.00180 * 94.99813 * 4 2 1 7 7 N 1.31513 * 120.00290 * 184.91280 * 6 4 2 8 8 Si 1.86808 * 120.00198 * 4.91234 * 6 4 2 9 9 H 1.48499 * 109.47071 * 84.83088 * 8 6 4 10 10 H 1.48498 * 109.47196 * 204.83212 * 8 6 4 11 11 H 1.48500 * 109.46816 * 324.83268 * 8 6 4 12 12 N 1.46897 * 109.47269 * 119.99808 * 2 1 3 13 13 C 1.46901 * 111.00373 * 275.00179 * 12 2 1 14 14 C 1.50692 * 109.47335 * 179.97438 * 13 12 2 15 15 C 1.35233 * 126.66300 * 89.99840 * 14 13 12 16 16 C 1.42285 * 103.93863 * 179.97438 * 15 14 13 17 17 C 1.48433 * 126.94205 * 180.02562 * 16 15 14 18 18 C 1.39320 * 120.12172 * 179.97438 * 17 16 15 19 19 C 1.38026 * 119.87697 * 180.02562 * 18 17 16 20 20 C 1.38320 * 120.11967 * 359.97438 * 19 18 17 21 21 C 1.38317 * 120.24379 * 0.02562 * 20 19 18 22 22 C 1.38032 * 120.11650 * 0.02562 * 21 20 19 23 23 N 1.30990 * 106.12346 * 0.26262 * 16 15 14 24 24 O 1.20912 * 111.42445 * 359.53287 * 23 16 15 25 25 H 1.08997 * 109.47051 * 175.04247 * 1 2 3 26 26 H 1.08998 * 109.47108 * 295.04541 * 1 2 3 27 27 H 1.09006 * 109.47363 * 55.04517 * 1 2 3 28 28 H 0.96998 * 120.00296 * 179.97438 * 7 6 4 29 29 H 1.00902 * 111.00039 * 38.95706 * 12 2 1 30 30 H 1.08995 * 109.46789 * 59.99308 * 13 12 2 31 31 H 1.09003 * 109.46585 * 299.99606 * 13 12 2 32 32 H 1.07997 * 128.02815 * 359.97438 * 15 14 13 33 33 H 1.08000 * 120.06122 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.93724 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.87581 * 179.73935 * 20 19 18 36 36 H 1.07992 * 119.94630 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.05602 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3133 1.8792 -2.3175 9 1 3.5988 2.3950 -1.7823 10 1 2.1055 2.3991 -3.6929 11 1 1.1984 2.3275 -1.4451 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5873 -0.5217 3.5560 15 6 3.8769 -0.6590 3.9394 16 6 3.8002 -1.4393 5.1267 17 6 4.9336 -1.8907 5.9723 18 6 4.6942 -2.6541 7.1129 19 6 5.7519 -3.0707 7.8958 20 6 7.0475 -2.7319 7.5496 21 6 7.2908 -1.9741 6.4183 22 6 6.2405 -1.5514 5.6288 23 7 2.5279 -1.6833 5.3201 24 8 1.8452 -1.1760 4.4607 25 1 -0.3633 -1.0238 -0.0888 26 1 -0.3633 0.4350 0.9310 27 1 -0.3634 0.5888 -0.8423 28 1 2.9362 -0.1048 -4.2556 29 1 1.4496 -1.4979 1.4100 30 1 1.0871 0.6163 2.5524 31 1 2.7589 1.0462 2.1182 32 1 4.7599 -0.2672 3.4565 33 1 3.6830 -2.9196 7.3839 34 1 5.5675 -3.6630 8.7799 35 1 7.8717 -3.0564 8.1673 36 1 8.3042 -1.7121 6.1527 37 1 6.4315 -0.9594 4.7459 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609030817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:55 Heat of formation + Delta-G solvation = 84.854530 kcal Electronic energy + Delta-G solvation = -19468.055215 eV Core-core repulsion = 16406.458061 eV Total energy + Delta-G solvation = -3061.597154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.74625 -39.25578 -36.59484 -34.39987 -33.14373 -31.78472 -31.14395 -30.40501 -29.06894 -25.43375 -24.82024 -24.12991 -23.05115 -21.97335 -20.16250 -20.07808 -17.68406 -17.44379 -16.86741 -16.53389 -15.75757 -15.14736 -14.68972 -14.63720 -14.05849 -13.85842 -13.65153 -13.40115 -13.17568 -12.79738 -12.51173 -12.30508 -12.17529 -11.72162 -11.51466 -11.35573 -11.09970 -10.93050 -10.79194 -10.76317 -10.25050 -9.83788 -9.32676 -9.23002 -9.17141 -8.64087 -8.57489 -7.58223 -6.10188 -4.08372 0.72265 1.18390 1.67755 2.50973 3.19018 3.24444 3.30944 3.33159 3.70481 3.97911 4.36760 4.39503 4.74392 4.81699 4.88029 4.95937 5.15744 5.18201 5.28108 5.34104 5.39677 5.52812 5.66566 5.79933 5.83818 5.88660 6.05996 6.17023 6.26166 6.27390 6.30075 6.35787 6.50701 6.68455 6.71768 7.06664 7.57787 7.79663 8.15721 8.32130 8.58305 8.97982 9.51252 11.03267 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.003528 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.054828 B = 7935.262866 C = 8475.179057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.181 3.819 3 H 0.040 0.960 4 C -0.494 4.494 5 H 0.077 0.923 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.267 1.267 12 N -0.669 5.669 13 C 0.131 3.869 14 C -0.007 4.007 15 C -0.208 4.208 16 C 0.050 3.950 17 C -0.014 4.014 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.094 4.094 23 N -0.362 5.362 24 O 0.100 5.900 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.052 0.948 28 H 0.264 0.736 29 H 0.334 0.666 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.173 0.827 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 0.359 20.198 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.073 3.927 3 H 0.057 0.943 4 C -0.532 4.532 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.192 1.192 12 N -0.300 5.300 13 C 0.001 3.999 14 C -0.070 4.070 15 C -0.231 4.231 16 C -0.106 4.106 17 C -0.015 4.015 18 C -0.114 4.114 19 C -0.140 4.140 20 C -0.133 4.133 21 C -0.138 4.138 22 C -0.113 4.113 23 N -0.065 5.065 24 O 0.032 5.968 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.152 0.848 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.191 0.809 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.485 -0.196 20.746 21.460 hybrid contribution -0.307 1.403 -0.417 1.495 sum 5.178 1.207 20.329 21.012 Atomic orbital electron populations 1.22663 1.00596 1.01120 0.98898 1.19698 0.89697 0.94731 0.88531 0.94251 1.20822 1.43004 0.95787 0.93607 0.90476 1.24981 0.94657 0.98102 0.95371 1.69884 1.46272 1.35739 1.01704 0.86913 0.78924 0.86659 0.77250 1.20075 1.21450 1.19220 1.61103 1.58556 1.08634 1.01728 1.20551 1.00135 0.94322 0.84907 1.24604 0.90734 0.97745 0.93954 1.22396 0.98381 1.05030 0.97257 1.21944 0.91474 1.00649 0.96567 1.17746 0.90342 0.99070 0.94298 1.21241 0.99787 0.96645 0.93773 1.21096 0.92558 1.00438 0.99899 1.21259 0.96894 0.98095 0.97082 1.21096 0.99012 0.98488 0.95187 1.21199 0.91151 0.99252 0.99731 1.74064 1.04553 1.16967 1.10938 1.84765 1.34453 1.50219 1.27340 0.93011 0.95904 0.92941 0.92564 0.84832 0.93574 0.88164 0.80934 0.85475 0.85689 0.85851 0.85453 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 9.16 37.16 0.34 -3.10 16 2 C 0.18 3.99 2.23 -68.87 -0.15 3.84 16 3 H 0.04 0.87 4.95 -51.93 -0.26 0.62 16 4 C -0.49 -13.39 9.19 -34.44 -0.32 -13.71 16 5 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 8 Si 0.88 20.65 26.99 -169.99 -4.59 16.06 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -5.93 6.82 56.52 0.39 -5.55 16 12 N -0.67 -12.94 6.22 -109.23 -0.68 -13.62 16 13 C 0.13 2.04 6.04 -4.98 -0.03 2.01 16 14 C -0.01 -0.11 6.98 -35.38 -0.25 -0.35 16 15 C -0.21 -3.01 10.45 -39.10 -0.41 -3.41 16 16 C 0.05 0.74 7.06 -82.47 -0.58 0.16 16 17 C -0.01 -0.18 5.88 -104.89 -0.62 -0.79 16 18 C -0.10 -1.12 9.70 -39.26 -0.38 -1.50 16 19 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 20 C -0.11 -0.99 10.04 -39.52 -0.40 -1.39 16 21 C -0.12 -1.10 10.03 -39.63 -0.40 -1.50 16 22 C -0.09 -1.03 9.60 -39.25 -0.38 -1.41 16 23 N -0.36 -5.81 11.82 33.32 0.39 -5.42 16 24 O 0.10 1.59 11.18 17.12 0.19 1.78 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.02 0.38 7.35 -51.93 -0.38 0.00 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.33 6.24 8.47 -39.29 -0.33 5.91 16 30 H 0.05 0.66 7.36 -51.93 -0.38 0.28 16 31 H 0.10 1.48 8.06 -51.93 -0.42 1.06 16 32 H 0.17 2.15 7.58 -52.49 -0.40 1.75 16 33 H 0.13 1.49 7.89 -52.49 -0.41 1.07 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 1.26 7.23 -52.49 -0.38 0.88 16 LS Contribution 318.80 15.07 4.80 4.80 Total: -1.00 -30.45 318.80 -7.82 -38.27 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.65 Total: 5.05 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -4.06 Total: -20.83 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.49 Total: -45.14 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.19 Total: 1.78 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.59 Total: 16.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.45 -7.82 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.127 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds