Wall clock time and date at job start Mon Mar 30 2020 01:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47149 * 2 1 4 4 C 1.50703 * 109.47050 * 240.00243 * 2 1 3 5 5 H 1.08000 * 119.99675 * 274.99634 * 4 2 1 6 6 C 1.37871 * 120.00180 * 94.99813 * 4 2 1 7 7 N 1.31513 * 120.00290 * 184.91280 * 6 4 2 8 8 Si 1.86808 * 120.00198 * 4.91234 * 6 4 2 9 9 H 1.48499 * 109.47071 * 84.83088 * 8 6 4 10 10 H 1.48498 * 109.47196 * 204.83212 * 8 6 4 11 11 H 1.48500 * 109.46816 * 324.83268 * 8 6 4 12 12 N 1.46897 * 109.47269 * 119.99808 * 2 1 3 13 13 C 1.46901 * 111.00373 * 275.00179 * 12 2 1 14 14 C 1.50692 * 109.47335 * 179.97438 * 13 12 2 15 15 C 1.35233 * 126.66300 * 89.99840 * 14 13 12 16 16 C 1.42285 * 103.93863 * 179.97438 * 15 14 13 17 17 C 1.48433 * 126.94205 * 180.02562 * 16 15 14 18 18 C 1.39320 * 120.12172 * 179.97438 * 17 16 15 19 19 C 1.38026 * 119.87697 * 180.02562 * 18 17 16 20 20 C 1.38320 * 120.11967 * 359.97438 * 19 18 17 21 21 C 1.38317 * 120.24379 * 0.02562 * 20 19 18 22 22 C 1.38032 * 120.11650 * 0.02562 * 21 20 19 23 23 N 1.30990 * 106.12346 * 0.26262 * 16 15 14 24 24 O 1.20912 * 111.42445 * 359.53287 * 23 16 15 25 25 H 1.08997 * 109.47051 * 175.04247 * 1 2 3 26 26 H 1.08998 * 109.47108 * 295.04541 * 1 2 3 27 27 H 1.09006 * 109.47363 * 55.04517 * 1 2 3 28 28 H 0.96998 * 120.00296 * 179.97438 * 7 6 4 29 29 H 1.00902 * 111.00039 * 38.95706 * 12 2 1 30 30 H 1.08995 * 109.46789 * 59.99308 * 13 12 2 31 31 H 1.09003 * 109.46585 * 299.99606 * 13 12 2 32 32 H 1.07997 * 128.02815 * 359.97438 * 15 14 13 33 33 H 1.08000 * 120.06122 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.93724 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.87581 * 179.73935 * 20 19 18 36 36 H 1.07992 * 119.94630 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.05602 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3133 1.8792 -2.3175 9 1 3.5988 2.3950 -1.7823 10 1 2.1055 2.3991 -3.6929 11 1 1.1984 2.3275 -1.4451 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5873 -0.5217 3.5560 15 6 3.8769 -0.6590 3.9394 16 6 3.8002 -1.4393 5.1267 17 6 4.9336 -1.8907 5.9723 18 6 4.6942 -2.6541 7.1129 19 6 5.7519 -3.0707 7.8958 20 6 7.0475 -2.7319 7.5496 21 6 7.2908 -1.9741 6.4183 22 6 6.2405 -1.5514 5.6288 23 7 2.5279 -1.6833 5.3201 24 8 1.8452 -1.1760 4.4607 25 1 -0.3633 -1.0238 -0.0888 26 1 -0.3633 0.4350 0.9310 27 1 -0.3634 0.5888 -0.8423 28 1 2.9362 -0.1048 -4.2556 29 1 1.4496 -1.4979 1.4100 30 1 1.0871 0.6163 2.5524 31 1 2.7589 1.0462 2.1182 32 1 4.7599 -0.2672 3.4565 33 1 3.6830 -2.9196 7.3839 34 1 5.5675 -3.6630 8.7799 35 1 7.8717 -3.0564 8.1673 36 1 8.3042 -1.7121 6.1527 37 1 6.4315 -0.9594 4.7459 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609030817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:54 Heat of formation + Delta-G solvation = 65.884170 kcal Electronic energy + Delta-G solvation = -19468.877832 eV Core-core repulsion = 16406.458061 eV Total energy + Delta-G solvation = -3062.419771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.90279 -40.03533 -38.15847 -35.46089 -34.83001 -33.42850 -31.94192 -31.30536 -30.56599 -27.24639 -26.28140 -25.12285 -23.98772 -22.87618 -21.91617 -21.10031 -19.28762 -18.63666 -18.28744 -17.49110 -16.80644 -16.45435 -16.24092 -15.71503 -15.46167 -15.09231 -14.53584 -14.46032 -14.33335 -14.13367 -14.00891 -13.76701 -13.59337 -13.12088 -12.87974 -12.57798 -12.38740 -12.27472 -11.98125 -11.88530 -11.79623 -11.74716 -11.19383 -10.69338 -10.48081 -9.93641 -9.52984 -9.10002 -8.22935 -6.26397 -0.17785 0.42096 0.53553 1.40052 1.41207 1.49489 1.50981 2.04022 2.39248 2.89144 2.98403 3.08068 3.34082 3.68913 3.95003 4.02136 4.09179 4.16324 4.24370 4.32651 4.43090 4.52096 4.56399 4.68396 4.71762 4.77484 4.82371 4.89536 5.04184 5.06627 5.08864 5.46456 5.48657 5.51966 5.53739 5.68898 5.98628 6.00004 6.60318 6.62582 6.79543 7.17715 7.37814 8.94636 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.003528 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.054828 B = 7935.262866 C = 8475.179057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.048 0.952 4 C -0.499 4.499 5 H 0.027 0.973 6 C 0.008 3.992 7 N -0.953 5.953 8 Si 0.944 3.056 9 H -0.265 1.265 10 H -0.292 1.292 11 H -0.238 1.238 12 N -0.685 5.685 13 C 0.136 3.864 14 C -0.014 4.014 15 C -0.209 4.209 16 C 0.049 3.951 17 C -0.046 4.046 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.108 4.108 21 C -0.121 4.121 22 C -0.103 4.103 23 N -0.384 5.384 24 O 0.089 5.911 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.265 0.735 29 H 0.335 0.665 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.191 0.809 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 2.025 22.392 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.078 3.922 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.768 3.232 9 H -0.190 1.190 10 H -0.218 1.218 11 H -0.162 1.162 12 N -0.316 5.316 13 C 0.007 3.993 14 C -0.077 4.077 15 C -0.231 4.231 16 C -0.107 4.107 17 C -0.047 4.047 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.122 4.122 23 N -0.089 5.089 24 O 0.023 5.977 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.153 0.847 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.208 0.792 33 H 0.135 0.865 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.492 1.472 22.970 23.915 hybrid contribution -0.530 0.724 -0.978 1.327 sum 5.961 2.196 21.992 22.891 Atomic orbital electron populations 1.22528 0.98665 1.01062 1.00500 1.19496 0.90959 0.94320 0.87463 0.93424 1.21126 1.42535 0.93938 0.96172 0.95413 1.25919 0.94414 1.03863 0.94719 1.70063 1.48574 1.38039 1.02737 0.85800 0.80204 0.79639 0.77587 1.19033 1.21802 1.16168 1.60799 1.58792 1.09435 1.02577 1.20557 1.01673 0.93673 0.83408 1.24586 0.90997 0.98118 0.94033 1.22702 0.98785 1.04585 0.97071 1.22367 0.91648 0.99924 0.96753 1.17940 0.90601 1.01028 0.95171 1.21331 1.00258 0.97321 0.94232 1.21414 0.92390 1.00139 1.00201 1.21699 0.97413 0.96642 0.96856 1.21478 0.99767 0.97759 0.94835 1.21411 0.90851 0.99485 1.00450 1.74046 1.05320 1.17984 1.11555 1.84735 1.34732 1.50598 1.27604 0.93687 0.92331 0.93551 0.92636 0.84714 0.91565 0.86860 0.79198 0.86460 0.83310 0.82609 0.82730 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.32 9.16 71.98 0.66 -5.66 16 2 C 0.19 7.95 2.23 44.17 0.10 8.05 16 3 H 0.05 1.97 4.95 -2.38 -0.01 1.96 16 4 C -0.50 -27.64 9.19 25.60 0.24 -27.40 16 5 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 6 C 0.01 0.43 5.47 84.65 0.46 0.89 16 7 N -0.95 -58.99 13.96 21.44 0.30 -58.69 16 8 Si 0.94 41.94 26.99 68.60 1.85 43.79 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.24 -9.41 6.82 99.48 0.68 -8.73 16 12 N -0.68 -25.81 6.22 -499.48 -3.11 -28.92 16 13 C 0.14 3.95 6.04 85.55 0.52 4.47 16 14 C -0.01 -0.41 6.98 24.99 0.17 -0.24 16 15 C -0.21 -5.87 10.45 22.58 0.24 -5.63 16 16 C 0.05 1.46 7.06 42.99 0.30 1.76 16 17 C -0.05 -1.19 5.88 -20.04 -0.12 -1.31 16 18 C -0.11 -2.59 9.70 22.48 0.22 -2.37 16 19 C -0.12 -2.08 10.03 22.24 0.22 -1.86 16 20 C -0.11 -1.52 10.04 22.31 0.22 -1.29 16 21 C -0.12 -1.87 10.03 22.24 0.22 -1.65 16 22 C -0.10 -2.11 9.60 22.48 0.22 -1.89 16 23 N -0.38 -12.44 11.82 -49.44 -0.58 -13.02 16 24 O 0.09 2.82 11.18 71.42 0.80 3.61 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.78 7.35 -2.39 -0.02 1.77 16 27 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.34 12.45 8.47 -89.69 -0.76 11.69 16 30 H 0.07 1.68 7.36 -2.39 -0.02 1.67 16 31 H 0.11 3.01 8.06 -2.39 -0.02 2.99 16 32 H 0.19 4.45 7.58 -2.91 -0.02 4.43 16 33 H 0.12 2.82 7.89 -2.91 -0.02 2.80 16 34 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.14 2.47 7.23 -2.91 -0.02 2.45 16 Total: -1.00 -68.42 318.80 3.23 -65.19 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.30 Total: 22.15 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 3.67 Total: -34.13 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -3.39 Total: -100.63 kcal Atomic # 8 Polarization: 2.82 SS G_CDS: 0.80 Total: 3.61 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.85 Total: 43.79 kcal Total: -68.42 3.23 -65.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.076 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds