Wall clock time and date at job start Mon Mar 30 2020 01:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47220 * 2 1 4 4 C 1.50705 * 109.47000 * 119.99660 * 2 1 3 5 5 H 1.07996 * 120.00193 * 120.00171 * 4 2 1 6 6 C 1.37881 * 120.00116 * 299.99882 * 4 2 1 7 7 N 1.31519 * 119.99784 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00161 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47108 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47002 * 120.00076 * 8 6 4 11 11 H 1.48498 * 109.47322 * 240.00303 * 8 6 4 12 12 N 1.46899 * 109.47497 * 239.99426 * 2 1 3 13 13 C 1.46898 * 110.99499 * 85.00180 * 12 2 1 14 14 C 1.50706 * 109.46915 * 180.02562 * 13 12 2 15 15 C 1.35227 * 126.66387 * 89.71043 * 14 13 12 16 16 C 1.42284 * 103.93711 * 179.87643 * 15 14 13 17 17 C 1.48430 * 126.93787 * 180.10072 * 16 15 14 18 18 C 1.39323 * 120.12132 * 0.04686 * 17 16 15 19 19 C 1.38020 * 119.88054 * 179.70107 * 18 17 16 20 20 C 1.38328 * 120.11822 * 0.59794 * 19 18 17 21 21 C 1.38318 * 120.23699 * 359.67292 * 20 19 18 22 22 C 1.38024 * 120.12494 * 0.03120 * 21 20 19 23 23 N 1.30992 * 106.12452 * 0.38994 * 16 15 14 24 24 O 1.20909 * 111.42497 * 359.74967 * 23 16 15 25 25 H 1.09006 * 109.47301 * 300.00172 * 1 2 3 26 26 H 1.09002 * 109.47216 * 60.00081 * 1 2 3 27 27 H 1.08997 * 109.47479 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99867 * 179.97438 * 7 6 4 29 29 H 1.00890 * 111.00134 * 208.95470 * 12 2 1 30 30 H 1.09003 * 109.47552 * 60.00489 * 13 12 2 31 31 H 1.09004 * 109.47512 * 299.99752 * 13 12 2 32 32 H 1.08000 * 128.02765 * 359.97438 * 15 14 13 33 33 H 1.07998 * 120.05491 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.94497 * 180.29748 * 19 18 17 35 35 H 1.07994 * 119.87638 * 179.70198 * 20 19 18 36 36 H 1.08001 * 119.93626 * 180.02562 * 21 20 19 37 37 H 1.07992 * 120.05938 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.1463 -2.2868 3.6040 10 1 3.1465 -0.1871 4.8166 11 1 1.1659 -1.5864 4.8162 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3468 14 6 2.5875 -0.5220 -3.5559 15 6 1.8395 -1.1871 -4.4652 16 6 2.7952 -1.6980 -5.3872 17 6 2.5203 -2.5121 -6.5976 18 6 1.2102 -2.8502 -6.9300 19 6 0.9598 -3.6022 -8.0599 20 6 2.0076 -4.0304 -8.8550 21 6 3.3105 -3.7023 -8.5265 22 6 3.5718 -2.9456 -7.4021 23 7 3.9671 -1.3102 -4.9489 24 8 3.8660 -0.6584 -3.9356 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7081 1.1611 3.4844 29 1 2.9173 -1.1205 -1.0286 30 1 2.7590 1.0461 -2.1182 31 1 1.0871 0.6162 -2.5525 32 1 0.7659 -1.3022 -4.4873 33 1 0.3919 -2.5208 -6.3070 34 1 -0.0557 -3.8608 -8.3212 35 1 1.8075 -4.6226 -9.7357 36 1 4.1249 -4.0388 -9.1510 37 1 4.5895 -2.6897 -7.1469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609030819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:57 Heat of formation + Delta-G solvation = 65.892308 kcal Electronic energy + Delta-G solvation = -19395.161665 eV Core-core repulsion = 16332.742248 eV Total energy + Delta-G solvation = -3062.419418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.89769 -40.02658 -37.98140 -35.46956 -34.97451 -33.09093 -31.90966 -31.28276 -30.19497 -27.43788 -26.20895 -25.10568 -23.99306 -22.86439 -21.81956 -21.07216 -18.99676 -18.60619 -18.07296 -17.47545 -16.94721 -16.57545 -16.13682 -15.67361 -15.42488 -15.15699 -14.59096 -14.46378 -14.26006 -14.01624 -13.98418 -13.60462 -13.19251 -12.87607 -12.72838 -12.45767 -12.29581 -12.21122 -12.16150 -12.00028 -11.86262 -11.79695 -10.91864 -10.59642 -10.46301 -9.92542 -9.52602 -9.18265 -8.14087 -6.27348 -0.17165 0.43266 0.53648 1.41699 1.44330 1.50322 1.55412 2.03560 2.42276 2.90281 2.99033 3.15322 3.33268 3.70080 3.95324 4.03084 4.09837 4.17179 4.26034 4.34400 4.52120 4.58746 4.62370 4.77305 4.85439 4.91103 5.04896 5.09864 5.11315 5.20896 5.46633 5.49814 5.52894 5.54830 5.65730 5.85429 5.99714 6.23389 6.36491 6.66165 6.92467 7.17309 7.42747 8.91530 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034879 B = 0.003107 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.587680 B = 9009.860147 C = 9118.722482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.216 3.784 3 H -0.018 1.018 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.681 5.681 13 C 0.141 3.859 14 C -0.013 4.013 15 C -0.205 4.205 16 C 0.051 3.949 17 C -0.047 4.047 18 C -0.101 4.101 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.113 4.113 23 N -0.385 5.385 24 O 0.083 5.917 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.196 0.804 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -6.683 -21.405 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 H 0.000 1.000 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.205 1.205 12 N -0.313 5.313 13 C 0.011 3.989 14 C -0.077 4.077 15 C -0.227 4.227 16 C -0.105 4.105 17 C -0.047 4.047 18 C -0.120 4.120 19 C -0.137 4.137 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.132 4.132 23 N -0.091 5.091 24 O 0.018 5.982 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.213 0.787 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.171 -6.943 -21.821 22.900 hybrid contribution 0.454 0.440 1.579 1.701 sum 0.625 -6.503 -20.242 21.270 Atomic orbital electron populations 1.21571 0.97095 0.99147 0.99630 1.18975 0.93126 0.91179 0.85870 1.00029 1.21593 1.31764 1.12742 0.91668 0.92528 1.25654 0.95157 0.95658 1.01827 1.70006 1.37268 1.23887 1.24198 0.85485 0.78129 0.78590 0.79283 1.19402 1.20636 1.20518 1.60763 1.32576 1.32786 1.05193 1.20453 1.01234 0.92237 0.84989 1.24561 0.82894 1.01198 0.98998 1.22684 1.02752 1.02367 0.94900 1.22396 0.88966 1.00907 0.98230 1.17939 0.95370 0.99231 0.92206 1.21413 0.94796 0.97810 0.97980 1.21486 1.01124 0.97213 0.93919 1.21705 0.92093 0.98590 1.00185 1.21404 0.98549 0.97880 0.96356 1.21327 0.98364 0.98089 0.95444 1.74060 1.23612 1.11625 0.99826 1.84751 1.28569 1.53357 1.31514 0.92340 0.94938 0.95280 0.92744 0.84884 0.93315 0.86824 0.78735 0.84211 0.82567 0.82596 0.83417 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 9.19 71.98 0.66 -4.79 16 2 C 0.22 10.52 2.60 44.17 0.11 10.63 16 3 H -0.02 -0.94 7.80 -2.39 -0.02 -0.96 16 4 C -0.54 -29.04 8.59 25.60 0.22 -28.82 16 5 H 0.06 3.03 7.62 -2.91 -0.02 3.01 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.91 -51.28 11.32 21.45 0.24 -51.04 16 8 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 N -0.68 -27.72 6.29 -499.45 -3.14 -30.86 16 13 C 0.14 4.66 6.04 85.56 0.52 5.18 16 14 C -0.01 -0.42 6.98 24.99 0.17 -0.25 16 15 C -0.21 -5.78 10.45 22.58 0.24 -5.55 16 16 C 0.05 1.54 7.06 42.99 0.30 1.84 16 17 C -0.05 -1.18 5.88 -20.04 -0.12 -1.30 16 18 C -0.10 -1.97 9.60 22.48 0.22 -1.76 16 19 C -0.12 -1.75 10.03 22.24 0.22 -1.52 16 20 C -0.11 -1.45 10.04 22.31 0.22 -1.23 16 21 C -0.12 -2.07 10.03 22.24 0.22 -1.85 16 22 C -0.11 -2.62 9.70 22.48 0.22 -2.40 16 23 N -0.39 -13.01 11.82 -49.44 -0.58 -13.59 16 24 O 0.08 2.83 11.18 71.39 0.80 3.63 16 25 H 0.06 3.05 6.07 -2.38 -0.01 3.03 16 26 H 0.03 1.30 7.45 -2.39 -0.02 1.28 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.33 13.86 8.22 -89.70 -0.74 13.12 16 30 H 0.05 1.61 8.06 -2.39 -0.02 1.59 16 31 H 0.11 3.43 7.44 -2.39 -0.02 3.41 16 32 H 0.20 4.37 7.58 -2.91 -0.02 4.35 16 33 H 0.14 2.31 7.23 -2.91 -0.02 2.29 16 34 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.12 2.83 7.89 -2.91 -0.02 2.81 16 Total: -1.00 -62.43 318.95 3.35 -59.08 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.35 Total: 18.21 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 3.66 Total: -30.44 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -3.48 Total: -95.50 kcal Atomic # 8 Polarization: 2.83 SS G_CDS: 0.80 Total: 3.63 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -62.43 3.35 -59.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.972 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds