Wall clock time and date at job start Mon Mar 30 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46768 * 2 1 4 4 N 1.46501 * 109.47292 * 120.00020 * 2 1 3 5 5 C 1.34775 * 119.99960 * 151.44324 * 4 2 1 6 6 O 1.21677 * 120.00050 * 4.60772 * 5 4 2 7 7 C 1.46887 * 119.99998 * 184.60656 * 5 4 2 8 8 C 1.36121 * 125.43330 * 185.37006 * 7 5 4 9 9 C 1.41699 * 107.74912 * 179.87927 * 8 7 5 10 10 C 1.40020 * 133.35795 * 180.14858 * 9 8 7 11 11 C 1.36578 * 119.83387 * 180.27340 * 10 9 8 12 12 C 1.38848 * 120.60099 * 359.97438 * 11 10 9 13 13 C 1.37848 * 120.63246 * 359.97438 * 12 11 10 14 14 C 1.39077 * 119.81524 * 0.02562 * 13 12 11 15 15 N 1.37838 * 133.16803 * 180.02562 * 14 13 12 16 16 C 1.36891 * 125.61715 * 0.02562 * 15 14 13 17 17 H 1.07991 * 120.00566 * 128.95101 * 16 15 14 18 18 C 1.39018 * 119.99775 * 308.95360 * 16 15 14 19 19 N 1.31347 * 119.99868 * 4.53516 * 18 16 15 20 20 Si 1.86801 * 120.00172 * 184.53927 * 18 16 15 21 21 H 1.48507 * 109.46816 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47314 * 119.99375 * 20 18 16 23 23 H 1.48493 * 109.47212 * 240.00037 * 20 18 16 24 24 H 1.08996 * 109.47105 * 299.99544 * 1 2 3 25 25 H 1.08995 * 109.46815 * 60.00155 * 1 2 3 26 26 H 1.09004 * 109.46509 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47105 * 240.00455 * 2 1 3 28 28 H 1.09001 * 109.47304 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47324 * 300.00282 * 3 2 1 30 30 H 1.08996 * 109.46936 * 60.00352 * 3 2 1 31 31 H 0.96998 * 119.99703 * 331.17245 * 4 2 1 32 32 H 1.08000 * 126.12796 * 359.97438 * 8 7 5 33 33 H 1.08007 * 120.07958 * 0.24900 * 10 9 8 34 34 H 1.08005 * 119.69441 * 180.02562 * 11 10 9 35 35 H 1.08001 * 119.68771 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.09088 * 180.02562 * 13 12 11 37 37 H 0.97006 * 120.00193 * 185.00908 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2096 -1.3206 1.1714 6 8 3.9171 -1.2456 0.1843 7 6 3.6538 -2.0977 2.3360 8 6 4.8721 -2.6893 2.4720 9 6 4.9011 -3.3337 3.7336 10 6 5.8718 -4.0850 4.4073 11 6 5.5986 -4.5950 5.6444 12 6 4.3652 -4.3752 6.2430 13 6 3.3940 -3.6379 5.6001 14 6 3.6489 -3.1084 4.3396 15 7 2.8999 -2.3486 3.4668 16 6 1.6200 -1.9143 3.6842 17 1 1.3739 -0.8711 3.5521 18 6 0.6370 -2.8162 4.0752 19 7 0.9539 -4.0667 4.3224 20 14 -1.1345 -2.2497 4.2489 21 1 -1.2273 -0.8054 3.9160 22 1 -1.9961 -3.0278 3.3230 23 1 -1.5884 -2.4652 5.6463 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.4862 -0.6911 2.0071 32 1 5.6738 -2.6697 1.7485 33 1 6.8341 -4.2611 3.9495 34 1 6.3492 -5.1739 6.1622 35 1 4.1651 -4.7851 7.2219 36 1 2.4378 -3.4720 6.0739 37 1 0.2587 -4.7124 4.5243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609159367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:37 Heat of formation + Delta-G solvation = -1.623412 kcal Electronic energy + Delta-G solvation = -21020.967512 eV Core-core repulsion = 17955.620393 eV Total energy + Delta-G solvation = -3065.347119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21296 -40.31778 -37.60354 -36.96578 -35.32722 -32.74586 -32.33390 -30.55896 -29.55122 -28.09590 -26.83448 -24.99811 -22.71644 -22.28725 -21.51167 -21.01603 -19.83716 -18.21025 -17.38567 -17.06411 -16.49919 -16.27974 -16.12241 -15.53096 -15.24927 -14.81665 -14.67360 -14.55988 -14.28382 -13.87006 -13.59266 -13.51945 -13.26307 -13.11300 -13.04723 -12.74332 -12.32458 -12.30971 -12.11501 -11.93514 -11.80442 -11.42888 -11.09881 -11.02395 -10.35869 -10.06103 -8.91101 -8.60773 -8.31490 -6.58402 0.13030 1.11901 1.36736 1.37303 1.43646 1.51677 2.07819 2.31966 2.52700 2.80962 2.87831 3.36085 3.88228 4.08656 4.16762 4.24613 4.32724 4.43795 4.54933 4.73294 4.73772 4.76413 4.87187 4.89995 4.97679 5.02777 5.08210 5.19697 5.24695 5.33365 5.37049 5.45824 5.62344 5.78423 5.91312 5.97605 6.20445 6.24872 6.58801 6.60771 6.90285 7.29388 7.50460 8.40306 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.008483 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.865022 B = 3299.759141 C = 4875.113911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 C -0.154 4.154 4 N -0.715 5.715 5 C 0.591 3.409 6 O -0.583 6.583 7 C -0.041 4.041 8 C -0.178 4.178 9 C -0.158 4.158 10 C -0.093 4.093 11 C -0.152 4.152 12 C -0.137 4.137 13 C -0.079 4.079 14 C 0.080 3.920 15 N -0.278 5.278 16 C -0.392 4.392 17 H 0.114 0.886 18 C 0.024 3.976 19 N -0.855 5.855 20 Si 0.990 3.010 21 H -0.240 1.240 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.412 0.588 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.101 0.899 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 4.879 -0.507 5.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 C -0.212 4.212 4 N -0.373 5.373 5 C 0.380 3.620 6 O -0.465 6.465 7 C -0.156 4.156 8 C -0.206 4.206 9 C -0.163 4.163 10 C -0.112 4.112 11 C -0.171 4.171 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.034 4.034 15 N 0.056 4.944 16 C -0.518 4.518 17 H 0.131 0.869 18 C -0.186 4.186 19 N -0.484 5.484 20 Si 0.810 3.190 21 H -0.163 1.163 22 H -0.196 1.196 23 H -0.197 1.197 24 H 0.086 0.914 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.257 0.743 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.120 0.880 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.814 4.919 -1.075 5.768 hybrid contribution -0.929 -0.231 0.360 1.022 sum -3.742 4.689 -0.715 6.041 Atomic orbital electron populations 1.22060 0.92046 1.02723 1.04292 1.21191 0.95780 0.93440 0.87697 1.22121 1.00524 0.95094 1.03473 1.46814 1.20011 1.53160 1.17292 1.17250 0.81627 0.77934 0.85177 1.90669 1.56061 1.65296 1.34518 1.20589 0.95609 1.09192 0.90190 1.20645 0.97232 1.04718 0.98054 1.18461 0.95585 1.05816 0.96408 1.20465 0.97876 0.97591 0.95267 1.20739 0.97593 1.03053 0.95721 1.21024 0.93813 1.00289 1.00607 1.20137 0.98465 0.98649 0.92634 1.18836 0.90407 1.00729 0.93444 1.40108 1.09942 1.35513 1.08794 1.19832 0.83262 0.95773 1.52951 0.86911 1.26646 1.04792 0.94683 0.92508 1.70053 1.36388 1.03815 1.38169 0.84927 0.75129 0.80294 0.78641 1.16275 1.19642 1.19650 0.91351 0.88214 0.92897 0.91219 0.94528 0.88977 0.91821 0.74280 0.84176 0.84934 0.83602 0.84542 0.88043 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.40 71.98 0.68 -2.96 16 2 C 0.12 3.79 3.20 44.99 0.14 3.94 16 3 C -0.15 -4.06 9.51 71.98 0.68 -3.38 16 4 N -0.72 -28.13 4.93 -446.29 -2.20 -30.33 16 5 C 0.59 27.85 7.76 86.51 0.67 28.52 16 6 O -0.58 -29.09 16.50 -4.27 -0.07 -29.16 16 7 C -0.04 -2.10 6.77 39.91 0.27 -1.83 16 8 C -0.18 -8.75 10.55 22.63 0.24 -8.51 16 9 C -0.16 -7.62 6.16 -21.33 -0.13 -7.75 16 10 C -0.09 -3.72 10.06 22.31 0.22 -3.49 16 11 C -0.15 -5.46 9.97 22.03 0.22 -5.24 16 12 C -0.14 -5.34 10.02 22.32 0.22 -5.12 16 13 C -0.08 -3.72 8.60 22.38 0.19 -3.53 16 14 C 0.08 4.10 6.02 39.06 0.24 4.34 16 15 N -0.28 -14.36 2.79 -331.35 -0.93 -15.29 16 16 C -0.39 -18.85 7.89 84.09 0.66 -18.19 16 17 H 0.11 4.99 6.05 -2.91 -0.02 4.97 16 18 C 0.02 1.11 5.17 84.95 0.44 1.55 16 19 N -0.85 -43.13 10.65 21.67 0.23 -42.90 16 20 Si 0.99 35.02 29.56 68.60 2.03 37.05 16 21 H -0.24 -7.61 7.11 99.48 0.71 -6.90 16 22 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.07 2.35 7.53 -2.39 -0.02 2.34 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.41 16.16 4.44 -92.71 -0.41 15.75 16 32 H 0.14 6.36 8.06 -2.91 -0.02 6.34 16 33 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.10 4.98 6.94 -2.91 -0.02 4.96 16 37 H 0.28 13.32 8.31 -92.70 -0.77 12.55 16 Total: -1.00 -62.78 311.19 4.49 -58.29 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: 0.67 Total: 44.02 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.75 Total: -21.67 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.89 Total: -88.52 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.07 Total: -29.16 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -62.78 4.49 -58.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609159367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.666 kcal (2) G-P(sol) polarization free energy of solvation -62.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds