Wall clock time and date at job start Mon Mar 30 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47787 * 2 1 4 4 C 1.46504 * 119.99917 * 274.09953 * 3 2 1 5 5 C 1.34778 * 120.00078 * 94.09774 * 3 2 1 6 6 O 1.21664 * 119.99888 * 359.81519 * 5 3 2 7 7 C 1.46887 * 120.00065 * 179.81364 * 5 3 2 8 8 C 1.36124 * 125.43838 * 340.01661 * 7 5 3 9 9 C 1.41701 * 107.75293 * 180.27983 * 8 7 5 10 10 C 1.40013 * 133.35574 * 179.78053 * 9 8 7 11 11 C 1.36578 * 119.83665 * 179.97438 * 10 9 8 12 12 C 1.38860 * 120.59608 * 359.95904 * 11 10 9 13 13 C 1.37842 * 120.63133 * 0.02562 * 12 11 10 14 14 C 1.39084 * 119.81776 * 0.02562 * 13 12 11 15 15 N 1.37839 * 133.16723 * 180.02562 * 14 13 12 16 16 C 1.36888 * 125.61771 * 359.97432 * 15 14 13 17 17 H 1.08004 * 120.00149 * 222.30792 * 16 15 14 18 18 C 1.39015 * 119.99950 * 42.31194 * 16 15 14 19 19 N 1.31354 * 120.00077 * 199.96942 * 18 16 15 20 20 Si 1.86796 * 119.99957 * 19.96282 * 18 16 15 21 21 H 1.48498 * 109.47642 * 264.75596 * 20 18 16 22 22 H 1.48500 * 109.47279 * 24.75882 * 20 18 16 23 23 H 1.48507 * 109.47179 * 144.75429 * 20 18 16 24 24 H 1.09000 * 109.46862 * 304.97744 * 1 2 3 25 25 H 1.08997 * 109.47234 * 64.96972 * 1 2 3 26 26 H 1.09001 * 109.47545 * 184.97655 * 1 2 3 27 27 H 1.09000 * 109.46975 * 239.99511 * 2 1 3 28 28 H 1.09011 * 109.47159 * 120.00538 * 2 1 3 29 29 H 1.09000 * 109.47263 * 262.20526 * 4 3 2 30 30 H 1.08998 * 109.47089 * 22.20899 * 4 3 2 31 31 H 1.09004 * 109.46816 * 142.20353 * 4 3 2 32 32 H 1.08004 * 126.12379 * 0.02562 * 8 7 5 33 33 H 1.08009 * 120.08348 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.70424 * 179.97438 * 11 10 9 35 35 H 1.07994 * 119.68246 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.09431 * 179.97438 * 13 12 11 37 37 H 0.96998 * 120.00111 * 174.99094 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1771 2.1019 -1.2655 5 6 2.3217 1.9886 1.1642 6 8 2.1867 1.3911 2.2154 7 6 2.8154 3.3720 1.1639 8 6 3.3682 4.0126 0.0976 9 6 3.7163 5.3219 0.5129 10 6 4.3099 6.4106 -0.1372 11 6 4.5236 7.5748 0.5442 12 6 4.1564 7.6905 1.8784 13 6 3.5701 6.6327 2.5397 14 6 3.3434 5.4366 1.8671 15 7 2.7904 4.2321 2.2455 16 6 2.3009 3.9352 3.4889 17 1 2.5122 2.9758 3.9376 18 6 1.5317 4.8686 4.1742 19 7 1.3899 4.7738 5.4766 20 14 0.6998 6.2578 3.2428 21 1 1.5595 7.4678 3.2867 22 1 0.4899 5.8507 1.8302 23 1 -0.6116 6.5593 3.8710 24 1 -0.3633 0.5891 0.8421 25 1 -0.3633 0.4348 -0.9311 26 1 -0.3634 -1.0238 0.0891 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5140 0.8900 29 1 3.2189 2.0542 -1.5827 30 1 1.5444 1.6444 -2.0261 31 1 1.8861 3.1435 -1.1293 32 1 3.5186 3.5960 -0.8875 33 1 4.5982 6.3300 -1.1749 34 1 4.9820 8.4131 0.0408 35 1 4.3318 8.6181 2.4028 36 1 3.2883 6.7321 3.5775 37 1 0.9144 5.4644 5.9643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609162960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:10 Heat of formation + Delta-G solvation = 46.391009 kcal Electronic energy + Delta-G solvation = -21216.737986 eV Core-core repulsion = 18153.472928 eV Total energy + Delta-G solvation = -3063.265057 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84365 -38.90168 -36.18069 -35.36121 -33.60857 -31.75805 -30.83260 -29.23070 -28.06355 -26.66897 -24.86123 -23.87185 -21.96522 -20.99225 -19.99636 -18.96835 -17.98695 -16.28369 -16.14265 -15.66370 -15.19609 -15.09522 -14.40690 -14.13680 -13.74866 -13.44788 -13.32372 -13.10081 -12.90331 -12.55905 -12.45723 -12.30264 -12.13058 -11.81818 -11.44577 -11.23820 -10.94074 -10.91978 -10.84551 -10.45465 -10.20361 -9.85227 -9.43332 -9.17377 -8.63720 -8.33926 -7.34775 -6.94707 -6.81619 -4.44999 1.62570 2.49971 2.85649 3.04885 3.13068 3.22256 3.25000 3.91163 4.05075 4.36863 4.62201 4.83239 5.04054 5.29291 5.36952 5.39103 5.54744 5.62312 5.70691 5.72574 5.82908 5.88044 5.96005 6.10006 6.13536 6.23897 6.34155 6.43925 6.59550 6.69637 6.83500 6.90311 7.22425 7.27707 7.35298 7.60097 7.63697 7.81441 7.95101 8.28608 8.73687 8.85149 9.09136 10.20073 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.008567 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.543023 B = 3267.536990 C = 4399.269506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.617 5.617 4 C 0.073 3.927 5 C 0.586 3.414 6 O -0.526 6.526 7 C -0.015 4.015 8 C -0.213 4.213 9 C -0.120 4.120 10 C -0.083 4.083 11 C -0.156 4.156 12 C -0.139 4.139 13 C -0.095 4.095 14 C 0.047 3.953 15 N -0.248 5.248 16 C -0.336 4.336 17 H 0.134 0.866 18 C 0.080 3.920 19 N -0.823 5.823 20 Si 0.869 3.131 21 H -0.244 1.244 22 H -0.256 1.256 23 H -0.281 1.281 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -1.086 -12.485 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.353 5.353 4 C -0.070 4.070 5 C 0.376 3.624 6 O -0.402 6.402 7 C -0.132 4.132 8 C -0.240 4.240 9 C -0.125 4.125 10 C -0.102 4.102 11 C -0.175 4.175 12 C -0.159 4.159 13 C -0.114 4.114 14 C -0.067 4.067 15 N 0.091 4.909 16 C -0.464 4.464 17 H 0.151 0.849 18 C -0.134 4.134 19 N -0.452 5.452 20 Si 0.693 3.307 21 H -0.168 1.168 22 H -0.180 1.180 23 H -0.208 1.208 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.361 -1.527 -11.324 11.432 hybrid contribution -0.557 0.669 -0.251 0.906 sum -0.196 -0.858 -11.575 11.608 Atomic orbital electron populations 1.22149 0.96275 1.01888 1.02309 1.21326 0.94142 0.82352 1.02812 1.47493 1.67393 1.14004 1.06396 1.22280 1.00852 0.98804 0.85076 1.17233 0.77077 0.85020 0.83065 1.90786 1.52943 1.65866 1.30563 1.19725 1.12039 0.93341 0.88087 1.21025 1.11083 0.93760 0.98115 1.17975 1.05885 0.95042 0.93578 1.20114 0.99436 0.92235 0.98424 1.20344 1.04645 0.97578 0.94901 1.20536 1.02655 0.97686 0.95030 1.20224 1.00447 0.91071 0.99671 1.18380 1.03595 0.89561 0.95119 1.40219 1.36176 1.07103 1.07387 1.19691 1.31812 1.06257 0.88676 0.84919 1.25534 0.94740 0.97836 0.95319 1.69653 1.35708 1.33442 1.06428 0.86995 0.79636 0.82534 0.81501 1.16842 1.17963 1.20772 0.91983 0.92854 0.91926 0.91071 0.89731 0.92456 0.91871 0.89406 0.83675 0.87296 0.87391 0.87064 0.86446 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.15 0.38 -1.76 16 2 C 0.12 1.60 6.13 -4.05 -0.02 1.58 16 3 N -0.62 -10.28 2.87 -183.05 -0.53 -10.80 16 4 C 0.07 0.93 8.74 59.85 0.52 1.45 16 5 C 0.59 12.94 7.56 -12.76 -0.10 12.85 16 6 O -0.53 -13.45 14.72 5.22 0.08 -13.38 16 7 C -0.02 -0.35 6.46 -82.25 -0.53 -0.88 16 8 C -0.21 -4.29 8.56 -39.02 -0.33 -4.62 16 9 C -0.12 -2.58 6.16 -106.89 -0.66 -3.24 16 10 C -0.08 -1.52 10.06 -39.52 -0.40 -1.92 16 11 C -0.16 -2.73 9.97 -39.95 -0.40 -3.13 16 12 C -0.14 -2.67 10.02 -39.50 -0.40 -3.06 16 13 C -0.09 -2.15 6.76 -39.41 -0.27 -2.42 16 14 C 0.05 1.14 5.18 -83.83 -0.43 0.70 16 15 N -0.25 -6.48 2.42 -56.08 -0.14 -6.61 16 16 C -0.34 -9.58 9.37 -15.01 -0.14 -9.72 16 17 H 0.13 4.16 7.05 -52.48 -0.37 3.79 16 18 C 0.08 2.18 4.90 -17.47 -0.09 2.09 16 19 N -0.82 -22.91 13.95 55.50 0.77 -22.14 16 20 Si 0.87 21.02 24.32 -169.99 -4.13 16.89 16 21 H -0.24 -5.52 5.57 56.52 0.31 -5.21 16 22 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.08 1.30 7.30 -51.92 -0.38 0.92 16 29 H 0.06 0.65 7.06 -51.93 -0.37 0.28 16 30 H 0.06 0.62 8.01 -51.93 -0.42 0.20 16 31 H 0.09 1.25 5.66 -51.93 -0.29 0.95 16 32 H 0.15 2.30 4.75 -52.48 -0.25 2.05 16 33 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.12 2.76 5.82 -52.49 -0.31 2.45 16 37 H 0.29 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -31.73 298.84 -6.86 -38.59 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.56 Total: 5.03 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.86 Total: -12.08 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.11 Total: -39.55 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.13 Total: 16.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.73 -6.86 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609162960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.978 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds