Wall clock time and date at job start Mon Mar 30 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47787 * 2 1 4 4 C 1.46504 * 119.99917 * 274.09953 * 3 2 1 5 5 C 1.34778 * 120.00078 * 94.09774 * 3 2 1 6 6 O 1.21664 * 119.99888 * 359.81519 * 5 3 2 7 7 C 1.46887 * 120.00065 * 179.81364 * 5 3 2 8 8 C 1.36124 * 125.43838 * 340.01661 * 7 5 3 9 9 C 1.41701 * 107.75293 * 180.27983 * 8 7 5 10 10 C 1.40013 * 133.35574 * 179.78053 * 9 8 7 11 11 C 1.36578 * 119.83665 * 179.97438 * 10 9 8 12 12 C 1.38860 * 120.59608 * 359.95904 * 11 10 9 13 13 C 1.37842 * 120.63133 * 0.02562 * 12 11 10 14 14 C 1.39084 * 119.81776 * 0.02562 * 13 12 11 15 15 N 1.37839 * 133.16723 * 180.02562 * 14 13 12 16 16 C 1.36888 * 125.61771 * 359.97432 * 15 14 13 17 17 H 1.08004 * 120.00149 * 222.30792 * 16 15 14 18 18 C 1.39015 * 119.99950 * 42.31194 * 16 15 14 19 19 N 1.31354 * 120.00077 * 199.96942 * 18 16 15 20 20 Si 1.86796 * 119.99957 * 19.96282 * 18 16 15 21 21 H 1.48498 * 109.47642 * 264.75596 * 20 18 16 22 22 H 1.48500 * 109.47279 * 24.75882 * 20 18 16 23 23 H 1.48507 * 109.47179 * 144.75429 * 20 18 16 24 24 H 1.09000 * 109.46862 * 304.97744 * 1 2 3 25 25 H 1.08997 * 109.47234 * 64.96972 * 1 2 3 26 26 H 1.09001 * 109.47545 * 184.97655 * 1 2 3 27 27 H 1.09000 * 109.46975 * 239.99511 * 2 1 3 28 28 H 1.09011 * 109.47159 * 120.00538 * 2 1 3 29 29 H 1.09000 * 109.47263 * 262.20526 * 4 3 2 30 30 H 1.08998 * 109.47089 * 22.20899 * 4 3 2 31 31 H 1.09004 * 109.46816 * 142.20353 * 4 3 2 32 32 H 1.08004 * 126.12379 * 0.02562 * 8 7 5 33 33 H 1.08009 * 120.08348 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.70424 * 179.97438 * 11 10 9 35 35 H 1.07994 * 119.68246 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.09431 * 179.97438 * 13 12 11 37 37 H 0.96998 * 120.00111 * 174.99094 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1771 2.1019 -1.2655 5 6 2.3217 1.9886 1.1642 6 8 2.1867 1.3911 2.2154 7 6 2.8154 3.3720 1.1639 8 6 3.3682 4.0126 0.0976 9 6 3.7163 5.3219 0.5129 10 6 4.3099 6.4106 -0.1372 11 6 4.5236 7.5748 0.5442 12 6 4.1564 7.6905 1.8784 13 6 3.5701 6.6327 2.5397 14 6 3.3434 5.4366 1.8671 15 7 2.7904 4.2321 2.2455 16 6 2.3009 3.9352 3.4889 17 1 2.5122 2.9758 3.9376 18 6 1.5317 4.8686 4.1742 19 7 1.3899 4.7738 5.4766 20 14 0.6998 6.2578 3.2428 21 1 1.5595 7.4678 3.2867 22 1 0.4899 5.8507 1.8302 23 1 -0.6116 6.5593 3.8710 24 1 -0.3633 0.5891 0.8421 25 1 -0.3633 0.4348 -0.9311 26 1 -0.3634 -1.0238 0.0891 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5140 0.8900 29 1 3.2189 2.0542 -1.5827 30 1 1.5444 1.6444 -2.0261 31 1 1.8861 3.1435 -1.1293 32 1 3.5186 3.5960 -0.8875 33 1 4.5982 6.3300 -1.1749 34 1 4.9820 8.4131 0.0408 35 1 4.3318 8.6181 2.4028 36 1 3.2883 6.7321 3.5775 37 1 0.9144 5.4644 5.9643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609162960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:10 Heat of formation + Delta-G solvation = 25.252921 kcal Electronic energy + Delta-G solvation = -21217.654602 eV Core-core repulsion = 18153.472928 eV Total energy + Delta-G solvation = -3064.181674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.51842 -40.45457 -37.74632 -36.90121 -35.47293 -33.38840 -32.19811 -30.84898 -29.62169 -27.91500 -26.71758 -25.28377 -23.39435 -22.57211 -21.63041 -20.57116 -19.74875 -17.86275 -17.65742 -17.45004 -16.68413 -16.57898 -16.15898 -15.61082 -15.36276 -15.06404 -14.76750 -14.67731 -14.42146 -14.15215 -13.92792 -13.89367 -13.31761 -13.23280 -12.92490 -12.79973 -12.58006 -12.35937 -12.29583 -11.97527 -11.89212 -11.49998 -11.29123 -10.89249 -10.37069 -9.70048 -9.02986 -8.82867 -8.59581 -6.52055 0.02312 0.91723 1.08172 1.12351 1.25676 1.34059 1.82392 1.96155 2.31669 2.67288 2.84400 3.17469 3.67270 4.03937 4.17243 4.26880 4.28124 4.33678 4.41208 4.52989 4.57472 4.69471 4.73414 4.80503 4.83406 4.96900 4.98622 5.06454 5.11497 5.27061 5.29501 5.38810 5.65071 5.70921 5.81339 5.85207 6.06212 6.11315 6.37684 6.42267 6.82712 7.16031 7.26487 8.25736 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.008567 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.543023 B = 3267.536990 C = 4399.269506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.605 5.605 4 C 0.061 3.939 5 C 0.572 3.428 6 O -0.583 6.583 7 C -0.047 4.047 8 C -0.174 4.174 9 C -0.142 4.142 10 C -0.066 4.066 11 C -0.154 4.154 12 C -0.112 4.112 13 C -0.148 4.148 14 C 0.030 3.970 15 N -0.289 5.289 16 C -0.358 4.358 17 H 0.077 0.923 18 C 0.042 3.958 19 N -0.875 5.875 20 Si 0.929 3.071 21 H -0.218 1.218 22 H -0.276 1.276 23 H -0.275 1.275 24 H 0.017 0.983 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.196 0.804 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 0.950 -18.087 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.012 4.012 3 N -0.338 5.338 4 C -0.080 4.080 5 C 0.362 3.638 6 O -0.464 6.464 7 C -0.161 4.161 8 C -0.200 4.200 9 C -0.147 4.147 10 C -0.085 4.085 11 C -0.173 4.173 12 C -0.132 4.132 13 C -0.168 4.168 14 C -0.082 4.082 15 N 0.046 4.954 16 C -0.486 4.486 17 H 0.094 0.906 18 C -0.166 4.166 19 N -0.507 5.507 20 Si 0.751 3.249 21 H -0.141 1.141 22 H -0.201 1.201 23 H -0.201 1.201 24 H 0.037 0.963 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.139 0.861 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.213 0.787 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.112 0.888 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.568 0.495 -16.980 17.060 hybrid contribution -0.723 0.032 1.151 1.360 sum 0.845 0.526 -15.829 15.861 Atomic orbital electron populations 1.22105 0.95428 1.02881 1.01561 1.21625 0.94830 0.80893 1.03870 1.47660 1.65097 1.14965 1.06076 1.22586 1.03501 0.98115 0.83766 1.17523 0.77173 0.84998 0.84063 1.90755 1.55597 1.66959 1.33043 1.20358 1.12919 0.93830 0.88988 1.21655 1.06776 0.92762 0.98783 1.18518 1.06882 0.96775 0.92565 1.20676 0.96626 0.90719 1.00438 1.20910 1.03509 0.98913 0.93939 1.21082 0.98772 0.97293 0.96038 1.20319 1.04682 0.92472 0.99357 1.18988 1.03196 0.89212 0.96832 1.40193 1.39222 1.08746 1.07248 1.19088 1.33825 1.04709 0.90973 0.90573 1.26122 0.94668 1.00021 0.95816 1.69720 1.38095 1.35217 1.07624 0.86133 0.79041 0.80925 0.78774 1.14140 1.20055 1.20066 0.96328 0.90497 0.89489 0.86074 0.92479 0.89833 0.87639 0.90702 0.78714 0.82475 0.82430 0.83974 0.88775 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.11 2.86 6.13 86.38 0.53 3.39 16 3 N -0.60 -19.43 2.87 -851.28 -2.45 -21.87 16 4 C 0.06 1.29 8.74 127.77 1.12 2.41 16 5 C 0.57 26.46 7.56 86.51 0.65 27.11 16 6 O -0.58 -32.78 14.72 -4.23 -0.06 -32.85 16 7 C -0.05 -2.23 6.46 39.91 0.26 -1.97 16 8 C -0.17 -6.52 8.56 22.63 0.19 -6.33 16 9 C -0.14 -5.71 6.16 -21.34 -0.13 -5.84 16 10 C -0.07 -2.01 10.06 22.31 0.22 -1.79 16 11 C -0.15 -4.42 9.97 22.03 0.22 -4.20 16 12 C -0.11 -3.88 10.02 22.32 0.22 -3.65 16 13 C -0.15 -6.70 6.76 22.38 0.15 -6.54 16 14 C 0.03 1.49 5.18 39.06 0.20 1.69 16 15 N -0.29 -16.01 2.42 -331.34 -0.80 -16.81 16 16 C -0.36 -22.51 9.37 84.09 0.79 -21.72 16 17 H 0.08 5.46 7.05 -2.91 -0.02 5.44 16 18 C 0.04 2.51 4.90 84.95 0.42 2.93 16 19 N -0.87 -53.12 13.95 21.67 0.30 -52.81 16 20 Si 0.93 45.96 24.32 68.60 1.67 47.63 16 21 H -0.22 -9.73 5.57 99.48 0.55 -9.18 16 22 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 24 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.12 2.00 8.10 -2.39 -0.02 1.99 16 28 H 0.06 1.82 7.30 -2.38 -0.02 1.80 16 29 H 0.08 1.39 7.06 -2.39 -0.02 1.37 16 30 H 0.11 1.42 8.01 -2.39 -0.02 1.40 16 31 H 0.07 1.82 5.66 -2.38 -0.01 1.81 16 32 H 0.20 5.12 4.75 -2.91 -0.01 5.10 16 33 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 36 H 0.09 4.60 5.82 -2.91 -0.02 4.58 16 37 H 0.29 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -81.80 298.84 5.18 -76.62 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.93 Total: 17.82 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 5.58 Total: -17.72 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -2.94 Total: -91.50 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.06 Total: -32.85 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -81.80 5.18 -76.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609162960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.877 kcal (2) G-P(sol) polarization free energy of solvation -81.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds