Wall clock time and date at job start Mon Mar 30 2020 01:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47032 * 2 1 4 4 C 1.50696 * 109.47286 * 239.99882 * 2 1 3 5 5 H 1.08001 * 120.00367 * 239.99891 * 4 2 1 6 6 C 1.37876 * 120.00100 * 59.99783 * 4 2 1 7 7 N 1.31518 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00222 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46938 * 59.99875 * 8 6 4 10 10 H 1.48497 * 109.47352 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47063 * 300.00037 * 8 6 4 12 12 N 1.46900 * 109.47371 * 119.99786 * 2 1 3 13 13 C 1.46902 * 110.99852 * 275.00665 * 12 2 1 14 14 C 1.50701 * 109.47029 * 179.97438 * 13 12 2 15 15 N 1.30358 * 125.48071 * 90.02334 * 14 13 12 16 16 C 1.34145 * 108.90072 * 179.97438 * 15 14 13 17 17 C 1.35768 * 107.51625 * 359.97438 * 16 15 14 18 18 C 1.47829 * 126.58476 * 180.26108 * 17 16 15 19 19 C 1.39566 * 120.14362 * 359.43864 * 18 17 16 20 20 C 1.37961 * 119.85660 * 179.76320 * 19 18 17 21 21 C 1.38361 * 120.13977 * 0.51491 * 20 19 18 22 22 C 1.38358 * 120.29409 * 359.74030 * 21 20 19 23 23 C 1.37960 * 120.14600 * 359.97438 * 22 21 20 24 24 O 1.33995 * 125.47919 * 269.99415 * 14 13 12 25 25 H 1.09003 * 109.47484 * 60.00300 * 1 2 3 26 26 H 1.09004 * 109.46850 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47514 * 299.99774 * 1 2 3 28 28 H 0.96998 * 119.99692 * 179.97438 * 7 6 4 29 29 H 1.00892 * 111.00506 * 151.04779 * 12 2 1 30 30 H 1.08997 * 109.47510 * 59.99771 * 13 12 2 31 31 H 1.09005 * 109.46662 * 299.99579 * 13 12 2 32 32 H 1.07999 * 126.24351 * 180.02562 * 16 15 14 33 33 H 1.08007 * 120.07473 * 0.02562 * 19 18 17 34 34 H 1.07994 * 119.93398 * 180.25340 * 20 19 18 35 35 H 1.08002 * 119.85460 * 179.71916 * 21 20 19 36 36 H 1.08001 * 119.93019 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.07736 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8282 -2.5199 -4.0080 10 1 1.8279 -0.4194 -5.2204 11 1 3.8076 -1.1189 -4.0077 12 7 2.0197 -0.6924 1.1994 13 6 2.0823 0.2227 2.3469 14 6 2.5873 -0.5217 3.5560 15 7 3.8379 -0.6389 3.9047 16 6 3.9091 -1.3659 5.0297 17 6 2.6413 -1.7041 5.3786 18 6 2.2340 -2.5004 6.5557 19 6 3.1985 -2.9959 7.4344 20 6 2.8115 -3.7342 8.5337 21 6 1.4712 -3.9927 8.7601 22 6 0.5104 -3.5088 7.8900 23 6 0.8836 -2.7643 6.7902 24 8 1.8229 -1.1690 4.4461 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7095 1.1617 -3.4844 29 1 2.9173 -1.1204 1.0288 30 1 1.0870 0.6163 2.5525 31 1 2.7587 1.0463 2.1181 32 1 4.8103 -1.6328 5.5616 33 1 4.2453 -2.7983 7.2565 34 1 3.5565 -4.1147 9.2167 35 1 1.1737 -4.5750 9.6197 36 1 -0.5341 -3.7138 8.0727 37 1 0.1327 -2.3868 6.1120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609449197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:21 Heat of formation + Delta-G solvation = 26.163327 kcal Electronic energy + Delta-G solvation = -19413.191324 eV Core-core repulsion = 16349.049129 eV Total energy + Delta-G solvation = -3064.142196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.36371 -39.94880 -37.95718 -35.90246 -34.83050 -33.51005 -31.92322 -31.47351 -29.21094 -27.46150 -26.37404 -24.54896 -23.52984 -22.45608 -21.97746 -21.77529 -19.08179 -18.48252 -17.80062 -17.35532 -16.84054 -16.65915 -15.96345 -15.78171 -15.46176 -15.25280 -14.88424 -14.39065 -14.31345 -14.11018 -13.86381 -13.66367 -13.15688 -12.80228 -12.74621 -12.49690 -12.43701 -12.32934 -12.20875 -12.04651 -12.01123 -11.63679 -10.98491 -10.83779 -10.58977 -9.94970 -9.30882 -9.04553 -8.15338 -6.29469 -0.40240 0.41865 0.85891 1.43082 1.44643 1.49530 1.52792 1.64325 2.41179 2.86163 2.92754 3.13637 3.51319 3.65335 3.91937 3.93099 4.01888 4.22162 4.27477 4.36942 4.48006 4.51590 4.62885 4.78480 4.84836 4.94975 5.05873 5.08365 5.14352 5.19348 5.40522 5.46033 5.51285 5.53843 5.62389 5.79793 5.97221 6.17975 6.30718 6.57775 6.64998 6.88100 7.40330 8.90200 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034286 B = 0.003151 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.453056 B = 8883.281673 C = 9017.360082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.218 3.782 3 H -0.015 1.015 4 C -0.543 4.543 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.683 5.683 13 C 0.155 3.845 14 C 0.203 3.797 15 N -0.499 5.499 16 C -0.028 4.028 17 C -0.019 4.019 18 C -0.037 4.037 19 C -0.100 4.100 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.122 4.122 24 O -0.202 6.202 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.265 0.735 29 H 0.337 0.663 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -7.825 23.341 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 H 0.002 0.998 4 C -0.581 4.581 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.197 1.197 12 N -0.316 5.316 13 C 0.025 3.975 14 C -0.003 4.003 15 N -0.229 5.229 16 C -0.167 4.167 17 C -0.072 4.072 18 C -0.038 4.038 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.140 4.140 24 O -0.088 6.088 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.154 0.846 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.165 0.835 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.164 0.836 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.215 -7.661 23.008 24.351 hybrid contribution 0.288 0.164 -1.113 1.162 sum 2.503 -7.497 21.895 23.278 Atomic orbital electron populations 1.21589 0.97230 0.99073 0.99611 1.18965 0.92996 0.91319 0.85632 0.99780 1.21501 1.32128 1.12931 0.91578 0.92488 1.25681 0.95048 0.95647 1.01874 1.69994 1.37109 1.23776 1.24433 0.85544 0.78729 0.78624 0.78326 1.19789 1.20655 1.19659 1.60718 1.32823 1.32859 1.05225 1.20298 1.01829 0.91952 0.83418 1.26362 0.84296 0.96143 0.93475 1.70371 1.19286 1.19047 1.14215 1.23816 0.98232 1.00014 0.94672 1.22006 0.89419 1.02555 0.93224 1.17845 0.95090 0.99213 0.91611 1.21359 0.99389 0.97197 0.93819 1.21479 0.97247 0.97563 0.96921 1.21739 0.92893 0.98464 0.99584 1.21395 1.01482 0.97199 0.93857 1.21422 0.94729 0.99099 0.98764 1.84447 1.39772 1.53304 1.31277 0.91930 0.95439 0.95320 0.92625 0.84584 0.88061 0.90935 0.76536 0.83454 0.82104 0.82588 0.83580 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 9.19 71.98 0.66 -5.13 16 2 C 0.22 11.16 2.60 44.17 0.11 11.27 16 3 H -0.02 -0.84 7.80 -2.39 -0.02 -0.86 16 4 C -0.54 -30.13 8.59 25.60 0.22 -29.91 16 5 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.91 -52.21 11.32 21.45 0.24 -51.96 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.68 -30.29 6.29 -499.47 -3.14 -33.43 16 13 C 0.15 5.84 6.11 85.56 0.52 6.36 16 14 C 0.20 7.37 7.84 88.33 0.69 8.07 16 15 N -0.50 -17.55 11.27 -302.87 -3.41 -20.96 16 16 C -0.03 -0.78 11.29 83.77 0.95 0.17 16 17 C -0.02 -0.56 7.07 24.24 0.17 -0.39 16 18 C -0.04 -0.87 5.87 -20.09 -0.12 -0.99 16 19 C -0.10 -1.67 9.57 22.52 0.22 -1.45 16 20 C -0.11 -1.39 10.03 22.23 0.22 -1.17 16 21 C -0.11 -1.32 10.04 22.33 0.22 -1.10 16 22 C -0.12 -1.95 10.03 22.23 0.22 -1.73 16 23 C -0.12 -2.74 9.73 22.53 0.22 -2.52 16 24 O -0.20 -7.10 10.59 -7.83 -0.08 -7.18 16 25 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 26 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.03 1.24 7.45 -2.39 -0.02 1.22 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.34 15.12 8.22 -89.70 -0.74 14.38 16 30 H 0.10 3.60 7.44 -2.39 -0.02 3.59 16 31 H 0.07 2.68 8.06 -2.38 -0.02 2.66 16 32 H 0.22 4.20 7.30 -2.91 -0.02 4.18 16 33 H 0.15 1.79 7.04 -2.91 -0.02 1.77 16 34 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.11 2.79 7.95 -2.91 -0.02 2.77 16 Total: -1.00 -65.65 319.18 0.74 -64.91 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.35 Total: 20.10 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.76 Total: -17.11 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -6.31 Total: -106.36 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.08 Total: -7.18 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -65.65 0.74 -64.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.071 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds