Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.50706 * 109.46935 * 180.02562 * 13 12 2 15 15 N 1.30357 * 125.48223 * 89.69642 * 14 13 12 16 16 C 1.34138 * 108.90312 * 179.89375 * 15 14 13 17 17 C 1.35765 * 107.51320 * 0.36547 * 16 15 14 18 18 C 1.47829 * 126.58091 * 179.80858 * 17 16 15 19 19 C 1.39574 * 120.14480 * 359.71546 * 18 17 16 20 20 C 1.37964 * 119.85172 * 179.72491 * 19 18 17 21 21 C 1.38352 * 120.14394 * 0.53661 * 20 19 18 22 22 C 1.38361 * 120.29594 * 359.76198 * 21 20 19 23 23 C 1.37958 * 120.14123 * 359.95780 * 22 21 20 24 24 O 1.33998 * 125.48068 * 270.00254 * 14 13 12 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 32 32 H 1.08006 * 126.24118 * 180.14302 * 16 15 14 33 33 H 1.08004 * 120.07181 * 0.02562 * 19 18 17 34 34 H 1.08001 * 119.92604 * 180.27439 * 20 19 18 35 35 H 1.08002 * 119.85468 * 179.74205 * 21 20 19 36 36 H 1.07994 * 119.92882 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.07295 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5875 -0.5219 -3.5560 15 7 1.8444 -1.1564 -4.4188 16 6 2.6343 -1.6955 -5.3593 17 6 3.9169 -1.3786 -5.0464 18 6 5.1286 -1.7640 -5.8003 19 6 5.0180 -2.5361 -6.9578 20 6 6.1525 -2.8876 -7.6599 21 6 7.3986 -2.4857 -7.2128 22 6 7.5157 -1.7255 -6.0627 23 6 6.3889 -1.3624 -5.3545 24 8 3.8731 -0.6429 -3.9139 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 2.9173 -1.1205 -1.0286 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 2.3096 -2.2786 -6.2084 33 1 4.0461 -2.8536 -7.3057 34 1 6.0679 -3.4812 -8.5581 35 1 8.2839 -2.7670 -7.7637 36 1 8.4914 -1.4154 -5.7189 37 1 6.4816 -0.7686 -4.4572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609449198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = 47.038221 kcal Electronic energy + Delta-G solvation = -19418.654359 eV Core-core repulsion = 16355.417367 eV Total energy + Delta-G solvation = -3063.236992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.13950 -39.22993 -36.16520 -34.62580 -33.14149 -32.31551 -31.23020 -29.87759 -27.82796 -25.57132 -24.74302 -23.59560 -22.59996 -21.46706 -20.74907 -19.90628 -17.92703 -16.81596 -16.51327 -16.16225 -15.82235 -15.16916 -14.94071 -14.37624 -14.10119 -13.74873 -13.64708 -13.31960 -13.16894 -13.07551 -12.48267 -12.03897 -11.69860 -11.34806 -11.30985 -11.18238 -10.93271 -10.83317 -10.39535 -10.34278 -10.19389 -10.14092 -9.88828 -9.25906 -8.91274 -8.53587 -8.06962 -7.47561 -6.07732 -4.14633 0.51956 1.10668 1.91799 2.65427 2.84797 3.27604 3.34505 3.38832 3.60255 4.16939 4.38048 4.48638 4.66274 4.68348 4.84799 5.01002 5.12597 5.20344 5.23126 5.33944 5.51660 5.63738 5.73434 5.77339 5.91053 5.99770 6.17076 6.21598 6.33166 6.39451 6.63271 6.79793 7.08114 7.13776 7.37887 7.71427 7.79540 7.91103 8.18023 8.23727 8.50642 8.93070 9.51460 10.98602 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.003377 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.822541 B = 8289.362102 C = 8989.959050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.214 3.786 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.679 5.679 13 C 0.152 3.848 14 C 0.224 3.776 15 N -0.472 5.472 16 C -0.014 4.014 17 C -0.028 4.028 18 C -0.002 4.002 19 C -0.101 4.101 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.103 4.103 24 O -0.197 6.197 25 H 0.034 0.966 26 H 0.007 0.993 27 H 0.083 0.917 28 H 0.262 0.738 29 H 0.335 0.665 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.183 0.817 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.434 -3.916 -18.954 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.024 0.976 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.313 5.313 13 C 0.021 3.979 14 C 0.018 3.982 15 N -0.200 5.200 16 C -0.155 4.155 17 C -0.081 4.081 18 C -0.003 4.003 19 C -0.119 4.119 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.134 4.134 23 C -0.121 4.121 24 O -0.084 6.084 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.200 0.800 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.084 -4.037 -18.878 21.335 hybrid contribution 1.775 0.051 1.002 2.039 sum 10.859 -3.985 -17.876 21.292 Atomic orbital electron populations 1.21744 0.97396 0.99758 0.99622 1.19182 0.92961 0.92429 0.84727 0.97599 1.21212 1.31784 1.12714 0.90250 0.92093 1.24901 0.94926 0.94985 0.99062 1.69887 1.36338 1.22845 1.23646 0.86487 0.78466 0.80096 0.82317 1.20707 1.21124 1.19798 1.60826 1.32564 1.32451 1.05443 1.20462 1.00895 0.92103 0.84415 1.26775 0.75761 0.97726 0.97950 1.70420 1.34324 1.11615 1.03673 1.23342 0.88330 1.03259 1.00533 1.21306 0.95929 1.01533 0.89337 1.17650 0.89193 0.99085 0.94370 1.21053 0.99472 0.97534 0.93842 1.21042 0.92139 1.00225 0.99950 1.21279 0.97687 0.98055 0.96619 1.21115 0.98497 0.98345 0.95403 1.21337 0.91460 0.99374 0.99976 1.84450 1.32197 1.56225 1.35505 0.94675 0.97393 0.89851 0.92793 0.84713 0.87228 0.92948 0.80011 0.85293 0.85370 0.85772 0.85519 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.32 2.60 -68.87 -0.18 5.14 16 3 H 0.01 0.17 7.80 -51.93 -0.40 -0.24 16 4 C -0.52 -14.16 8.59 -34.44 -0.30 -14.45 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.68 -14.68 6.29 -109.21 -0.69 -15.37 16 13 C 0.15 2.78 6.11 -4.97 -0.03 2.75 16 14 C 0.22 3.98 7.84 -12.90 -0.10 3.88 16 15 N -0.47 -8.43 11.27 -10.82 -0.12 -8.55 16 16 C -0.01 -0.21 11.29 -17.43 -0.20 -0.40 16 17 C -0.03 -0.41 7.07 -36.54 -0.26 -0.67 16 18 C 0.00 -0.03 5.87 -104.98 -0.62 -0.65 16 19 C -0.10 -0.97 9.57 -39.18 -0.38 -1.34 16 20 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 21 C -0.12 -0.94 10.04 -39.49 -0.40 -1.33 16 22 C -0.12 -1.04 10.03 -39.64 -0.40 -1.44 16 23 C -0.10 -1.17 9.73 -39.18 -0.38 -1.55 16 24 O -0.20 -3.30 10.59 4.24 0.04 -3.26 16 25 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.01 0.16 7.45 -51.93 -0.39 -0.23 16 27 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.34 7.16 8.22 -39.29 -0.32 6.84 16 30 H 0.11 1.98 7.44 -51.93 -0.39 1.59 16 31 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 32 H 0.18 1.97 7.30 -52.48 -0.38 1.59 16 33 H 0.13 0.99 7.04 -52.48 -0.37 0.62 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.13 1.46 7.95 -52.49 -0.42 1.04 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -30.26 319.17 -8.36 -38.62 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.63 Total: 4.57 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.38 Total: -12.53 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.18 Total: -48.29 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.26 -8.36 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.654 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds