Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.50706 * 109.46935 * 180.02562 * 13 12 2 15 15 N 1.30357 * 125.48223 * 89.69642 * 14 13 12 16 16 C 1.34138 * 108.90312 * 179.89375 * 15 14 13 17 17 C 1.35765 * 107.51320 * 0.36547 * 16 15 14 18 18 C 1.47829 * 126.58091 * 179.80858 * 17 16 15 19 19 C 1.39574 * 120.14480 * 359.71546 * 18 17 16 20 20 C 1.37964 * 119.85172 * 179.72491 * 19 18 17 21 21 C 1.38352 * 120.14394 * 0.53661 * 20 19 18 22 22 C 1.38361 * 120.29594 * 359.76198 * 21 20 19 23 23 C 1.37958 * 120.14123 * 359.95780 * 22 21 20 24 24 O 1.33998 * 125.48068 * 270.00254 * 14 13 12 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 32 32 H 1.08006 * 126.24118 * 180.14302 * 16 15 14 33 33 H 1.08004 * 120.07181 * 0.02562 * 19 18 17 34 34 H 1.08001 * 119.92604 * 180.27439 * 20 19 18 35 35 H 1.08002 * 119.85468 * 179.74205 * 21 20 19 36 36 H 1.07994 * 119.92882 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.07295 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5875 -0.5219 -3.5560 15 7 1.8444 -1.1564 -4.4188 16 6 2.6343 -1.6955 -5.3593 17 6 3.9169 -1.3786 -5.0464 18 6 5.1286 -1.7640 -5.8003 19 6 5.0180 -2.5361 -6.9578 20 6 6.1525 -2.8876 -7.6599 21 6 7.3986 -2.4857 -7.2128 22 6 7.5157 -1.7255 -6.0627 23 6 6.3889 -1.3624 -5.3545 24 8 3.8731 -0.6429 -3.9139 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 2.9173 -1.1205 -1.0286 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 2.3096 -2.2786 -6.2084 33 1 4.0461 -2.8536 -7.3057 34 1 6.0679 -3.4812 -8.5581 35 1 8.2839 -2.7670 -7.7637 36 1 8.4914 -1.4154 -5.7189 37 1 6.4816 -0.7686 -4.4572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609449198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = 26.699347 kcal Electronic energy + Delta-G solvation = -19419.536319 eV Core-core repulsion = 16355.417367 eV Total energy + Delta-G solvation = -3064.118952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.37279 -39.95685 -37.95379 -35.90123 -34.84341 -33.51618 -31.93153 -31.47382 -29.22713 -27.45072 -26.37008 -24.54330 -23.53362 -22.50257 -21.97563 -21.78192 -19.04751 -18.49181 -17.81472 -17.23663 -16.95692 -16.71942 -16.17252 -15.79383 -15.44682 -15.00807 -14.83920 -14.39003 -14.34019 -14.12541 -13.87167 -13.67821 -13.21971 -12.83502 -12.76455 -12.46767 -12.41555 -12.31088 -12.20296 -12.04956 -12.02597 -11.59654 -10.97765 -10.83711 -10.59605 -9.95802 -9.28649 -9.05009 -8.15585 -6.29826 -0.41253 0.41032 0.85731 1.41878 1.43431 1.47041 1.54202 1.66236 2.40823 2.85393 2.94582 3.13432 3.50943 3.63265 3.90586 3.92532 4.00735 4.23472 4.28033 4.36588 4.46441 4.49746 4.63452 4.81353 4.81875 4.94790 5.07391 5.07830 5.15672 5.19389 5.40869 5.45604 5.50296 5.53131 5.62334 5.79920 5.96400 6.18127 6.31134 6.58280 6.67470 6.88066 7.40107 8.90110 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.003377 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.822541 B = 8289.362102 C = 8989.959050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.219 3.781 3 H -0.015 1.015 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.682 5.682 13 C 0.158 3.842 14 C 0.199 3.801 15 N -0.489 5.489 16 C -0.028 4.028 17 C -0.019 4.019 18 C -0.036 4.036 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.122 4.122 24 O -0.208 6.208 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.264 0.736 29 H 0.335 0.665 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.218 0.782 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.007 -5.397 -20.861 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 H 0.003 0.997 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.314 5.314 13 C 0.028 3.972 14 C -0.007 4.007 15 N -0.218 5.218 16 C -0.168 4.168 17 C -0.072 4.072 18 C -0.037 4.037 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.141 4.141 24 O -0.095 6.095 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.152 0.848 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.234 0.766 33 H 0.166 0.834 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.164 0.836 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.669 -5.515 -20.801 24.020 hybrid contribution 1.425 0.467 1.409 2.057 sum 12.094 -5.049 -19.392 23.405 Atomic orbital electron populations 1.21582 0.97288 0.99063 0.99547 1.18976 0.93008 0.91293 0.85613 0.99725 1.21526 1.32085 1.12887 0.91541 0.92455 1.25682 0.95040 0.95658 1.01892 1.70001 1.37046 1.23888 1.24378 0.85483 0.78095 0.78932 0.78676 1.19960 1.20670 1.19540 1.60695 1.32588 1.32984 1.05156 1.20315 1.01341 0.91833 0.83666 1.26378 0.76284 0.99513 0.98487 1.70361 1.35357 1.11725 1.04390 1.23860 0.87922 1.03881 1.01107 1.21973 0.97287 0.99717 0.88199 1.17841 0.88385 1.01600 0.95865 1.21367 1.01230 0.96428 0.92743 1.21481 0.91463 0.99685 1.00555 1.21737 0.99023 0.96194 0.95745 1.21394 0.98521 0.98343 0.95699 1.21413 0.92325 1.00061 1.00253 1.84426 1.31793 1.56764 1.36558 0.95497 0.95377 0.91951 0.92631 0.84824 0.87115 0.92132 0.76574 0.83446 0.82100 0.82604 0.83606 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 9.19 71.98 0.66 -5.18 16 2 C 0.22 11.16 2.60 44.17 0.11 11.27 16 3 H -0.01 -0.80 7.80 -2.39 -0.02 -0.82 16 4 C -0.54 -29.94 8.59 25.60 0.22 -29.72 16 5 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -52.12 11.32 21.44 0.24 -51.88 16 8 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 N -0.68 -30.15 6.29 -499.44 -3.14 -33.30 16 13 C 0.16 5.96 6.11 85.56 0.52 6.48 16 14 C 0.20 7.23 7.84 88.33 0.69 7.93 16 15 N -0.49 -17.50 11.27 -302.86 -3.41 -20.91 16 16 C -0.03 -0.80 11.29 83.77 0.95 0.15 16 17 C -0.02 -0.56 7.07 24.24 0.17 -0.38 16 18 C -0.04 -0.85 5.87 -20.09 -0.12 -0.97 16 19 C -0.10 -1.66 9.57 22.53 0.22 -1.44 16 20 C -0.11 -1.38 10.03 22.23 0.22 -1.16 16 21 C -0.11 -1.32 10.04 22.33 0.22 -1.09 16 22 C -0.12 -1.94 10.03 22.23 0.22 -1.71 16 23 C -0.12 -2.71 9.73 22.53 0.22 -2.49 16 24 O -0.21 -7.19 10.59 -7.76 -0.08 -7.27 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.03 1.24 7.45 -2.39 -0.02 1.22 16 27 H 0.06 3.39 6.07 -2.38 -0.01 3.37 16 28 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 29 H 0.33 14.72 8.22 -89.70 -0.74 13.99 16 30 H 0.11 4.09 7.44 -2.39 -0.02 4.07 16 31 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 32 H 0.22 4.25 7.30 -2.91 -0.02 4.23 16 33 H 0.15 1.79 7.04 -2.91 -0.02 1.77 16 34 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.11 2.73 7.95 -2.91 -0.02 2.71 16 Total: -1.00 -65.85 319.17 0.75 -65.11 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.35 Total: 19.71 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.76 Total: -16.93 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -6.31 Total: -106.09 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.08 Total: -7.27 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.85 0.75 -65.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.809 kcal (2) G-P(sol) polarization free energy of solvation -65.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds