Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 C 1.34547 * 126.08203 * 94.71083 * 14 13 12 16 16 O 1.34776 * 107.27019 * 179.90132 * 15 14 13 17 17 C 1.34429 * 107.69470 * 0.36373 * 16 15 14 18 18 C 1.47832 * 125.72548 * 179.80984 * 17 16 15 19 19 C 1.39571 * 120.14079 * 179.68133 * 18 17 16 20 20 C 1.37959 * 119.84722 * 179.74423 * 19 18 17 21 21 C 1.38354 * 120.14682 * 0.55606 * 20 19 18 22 22 C 1.38355 * 120.29441 * 359.69588 * 21 20 19 23 23 C 1.37962 * 120.14190 * 0.02562 * 22 21 20 24 24 N 1.31221 * 108.54975 * 359.77247 * 17 16 15 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 30 30 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 31 31 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 32 32 H 1.07995 * 126.35996 * 0.02562 * 15 14 13 33 33 H 1.07997 * 120.07302 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.92627 * 180.29363 * 20 19 18 35 35 H 1.08006 * 119.85666 * 179.72266 * 21 20 19 36 36 H 1.07993 * 119.93180 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.07616 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 6 3.8644 -0.5773 3.9762 16 8 3.8873 -1.3400 5.0871 17 6 2.6294 -1.7480 5.3287 18 6 2.2020 -2.6099 6.4511 19 6 0.8581 -2.9581 6.5950 20 6 0.4667 -3.7670 7.6417 21 6 1.4012 -4.2235 8.5541 22 6 2.7341 -3.8778 8.4202 23 6 3.1397 -3.0741 7.3748 24 7 1.8444 -1.2521 4.4014 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 1.4496 -1.4980 1.4100 30 1 2.7589 1.0462 2.1181 31 1 1.0871 0.6162 2.5525 32 1 4.7129 -0.0979 3.5109 33 1 0.1269 -2.5980 5.8864 34 1 -0.5722 -4.0412 7.7516 35 1 1.0889 -4.8530 9.3744 36 1 3.4587 -4.2378 9.1356 37 1 4.1805 -2.8052 7.2710 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610342043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = 48.159354 kcal Electronic energy + Delta-G solvation = -19414.895626 eV Core-core repulsion = 16351.707250 eV Total energy + Delta-G solvation = -3063.188376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.12884 -39.21458 -36.34288 -34.60069 -32.88271 -32.03833 -31.20624 -29.72367 -27.92623 -25.20475 -24.59048 -23.86093 -22.84004 -21.13982 -20.57598 -20.16030 -17.85129 -16.58923 -16.50944 -16.19868 -15.70986 -15.16487 -14.75589 -14.40446 -14.15127 -13.86890 -13.68182 -13.47010 -13.10739 -12.71725 -12.14072 -11.75754 -11.71807 -11.48141 -11.34365 -11.12027 -10.91183 -10.77039 -10.49578 -10.39702 -10.13080 -9.95767 -9.64264 -9.23726 -9.00409 -8.35236 -8.19704 -7.25290 -5.97318 -4.00614 0.54604 1.12850 1.88301 2.72970 2.84307 3.33909 3.40050 3.44922 3.63275 3.92316 4.45856 4.63684 4.68107 4.84115 5.02856 5.07177 5.17115 5.29878 5.34251 5.48942 5.56642 5.74470 5.78206 5.92364 6.08559 6.10572 6.21028 6.23896 6.27462 6.47932 6.63412 6.72371 6.88404 7.11162 7.34843 7.76047 7.85639 7.89166 8.26894 8.52509 8.60644 9.06511 9.64642 11.09750 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.003194 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.000356 B = 8764.468140 C = 8913.464652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.136 3.864 14 C 0.008 3.992 15 C -0.057 4.057 16 O -0.201 6.201 17 C 0.213 3.787 18 C -0.007 4.007 19 C -0.073 4.073 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.122 4.122 23 C -0.093 4.093 24 N -0.459 5.459 25 H 0.006 0.994 26 H 0.028 0.972 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.330 0.670 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.220 0.780 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 -6.346 21.548 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C 0.006 3.994 14 C -0.114 4.114 15 C -0.128 4.128 16 O -0.087 6.087 17 C 0.010 3.990 18 C -0.009 4.009 19 C -0.092 4.092 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.140 4.140 23 C -0.113 4.113 24 N -0.189 5.189 25 H 0.025 0.975 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.236 0.764 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.576 -6.230 21.204 22.250 hybrid contribution 0.111 -0.116 -0.796 0.813 sum 2.688 -6.346 20.407 21.540 Atomic orbital electron populations 1.22432 1.00561 0.99339 1.00542 1.19199 0.89757 0.94427 0.86208 0.94720 1.21148 1.30236 1.12432 0.89541 0.91949 1.24945 0.95352 0.95204 0.99027 1.69882 1.37352 1.23166 1.23355 0.86500 0.79244 0.79236 0.82425 1.20835 1.21370 1.19882 1.60908 1.58409 1.08970 1.02678 1.20218 0.99265 0.94055 0.85829 1.21973 0.90322 1.00609 0.98468 1.24962 1.00812 0.99110 0.87925 1.84449 1.32327 1.52572 1.39400 1.23685 0.77967 0.99944 0.97412 1.17308 0.94181 0.97684 0.91682 1.21250 0.94314 0.95951 0.97692 1.21126 1.00121 0.97980 0.94698 1.21339 0.93264 0.99099 0.98889 1.21054 0.96307 0.98575 0.98110 1.21250 0.99400 0.96864 0.93776 1.70519 1.33834 1.11165 1.03412 0.97483 0.95296 0.89210 0.93059 0.85300 0.89918 0.94309 0.76383 0.84300 0.85154 0.85630 0.85375 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.94 37.16 0.33 -3.84 16 2 C 0.21 5.37 2.57 -68.87 -0.18 5.19 16 3 H 0.03 0.95 7.80 -51.93 -0.40 0.54 16 4 C -0.49 -13.84 8.84 -34.44 -0.30 -14.14 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.80 11.32 55.43 0.63 -25.17 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.68 -14.94 6.22 -109.22 -0.68 -15.62 16 13 C 0.14 2.55 6.02 -4.98 -0.03 2.52 16 14 C 0.01 0.14 6.61 -82.88 -0.55 -0.41 16 15 C -0.06 -0.84 12.08 29.43 0.36 -0.49 16 16 O -0.20 -2.98 10.52 4.06 0.04 -2.94 16 17 C 0.21 3.28 7.90 -13.89 -0.11 3.17 16 18 C -0.01 -0.09 5.87 -104.98 -0.62 -0.71 16 19 C -0.07 -0.83 9.69 -39.19 -0.38 -1.21 16 20 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 21 C -0.11 -0.83 10.04 -39.50 -0.40 -1.23 16 22 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 23 C -0.09 -0.96 9.72 -39.19 -0.38 -1.34 16 24 N -0.46 -7.98 10.91 -7.96 -0.09 -8.07 16 25 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 26 H 0.03 0.69 8.13 -51.93 -0.42 0.26 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.33 7.31 8.46 -39.29 -0.33 6.98 16 30 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 31 H 0.04 0.75 7.44 -51.93 -0.39 0.36 16 32 H 0.22 2.46 8.06 -52.49 -0.42 2.03 16 33 H 0.14 1.65 7.83 -52.49 -0.41 1.24 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.13 1.20 7.90 -52.49 -0.41 0.78 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -30.89 320.98 -8.15 -39.04 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.73 Total: 5.19 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -3.14 Total: -13.90 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.14 Total: -48.86 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.89 -8.15 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610342043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.203 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds