Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 C 1.34547 * 126.08203 * 94.71083 * 14 13 12 16 16 O 1.34776 * 107.27019 * 179.90132 * 15 14 13 17 17 C 1.34429 * 107.69470 * 0.36373 * 16 15 14 18 18 C 1.47832 * 125.72548 * 179.80984 * 17 16 15 19 19 C 1.39571 * 120.14079 * 179.68133 * 18 17 16 20 20 C 1.37959 * 119.84722 * 179.74423 * 19 18 17 21 21 C 1.38354 * 120.14682 * 0.55606 * 20 19 18 22 22 C 1.38355 * 120.29441 * 359.69588 * 21 20 19 23 23 C 1.37962 * 120.14190 * 0.02562 * 22 21 20 24 24 N 1.31221 * 108.54975 * 359.77247 * 17 16 15 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 30 30 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 31 31 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 32 32 H 1.07995 * 126.35996 * 0.02562 * 15 14 13 33 33 H 1.07997 * 120.07302 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.92627 * 180.29363 * 20 19 18 35 35 H 1.08006 * 119.85666 * 179.72266 * 21 20 19 36 36 H 1.07993 * 119.93180 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.07616 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 6 3.8644 -0.5773 3.9762 16 8 3.8873 -1.3400 5.0871 17 6 2.6294 -1.7480 5.3287 18 6 2.2020 -2.6099 6.4511 19 6 0.8581 -2.9581 6.5950 20 6 0.4667 -3.7670 7.6417 21 6 1.4012 -4.2235 8.5541 22 6 2.7341 -3.8778 8.4202 23 6 3.1397 -3.0741 7.3748 24 7 1.8444 -1.2521 4.4014 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 1.4496 -1.4980 1.4100 30 1 2.7589 1.0462 2.1181 31 1 1.0871 0.6162 2.5525 32 1 4.7129 -0.0979 3.5109 33 1 0.1269 -2.5980 5.8864 34 1 -0.5722 -4.0412 7.7516 35 1 1.0889 -4.8530 9.3744 36 1 3.4587 -4.2378 9.1356 37 1 4.1805 -2.8052 7.2710 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610342043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = 27.105169 kcal Electronic energy + Delta-G solvation = -19415.808604 eV Core-core repulsion = 16351.707250 eV Total energy + Delta-G solvation = -3064.101354 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.31256 -39.94714 -38.08512 -36.01779 -34.51464 -33.31548 -31.93959 -31.18060 -29.40728 -27.28113 -26.15355 -24.82668 -23.67062 -22.27816 -22.04336 -21.74111 -18.94798 -18.25971 -17.71741 -17.39077 -16.79106 -16.55356 -16.10716 -15.99546 -15.38816 -15.20522 -14.77675 -14.45827 -14.37747 -13.88199 -13.72629 -13.60965 -13.28712 -12.85476 -12.70288 -12.55133 -12.36643 -12.25181 -12.17930 -12.06002 -11.90329 -11.60288 -11.08491 -10.65895 -10.49519 -9.95255 -9.24852 -9.04869 -8.10369 -6.21723 -0.34185 0.41729 0.81427 1.43529 1.43784 1.55140 1.64342 1.67531 2.44409 2.83104 2.86311 3.17983 3.65323 3.79529 3.94194 4.00978 4.05918 4.23434 4.46541 4.47231 4.51234 4.60882 4.70601 4.75835 4.82224 4.87907 4.95358 5.06682 5.08700 5.14684 5.35763 5.45093 5.49143 5.53273 5.66866 5.78158 5.95511 6.23227 6.57511 6.64870 6.70417 6.90769 7.47915 8.95393 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.003194 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.000356 B = 8764.468140 C = 8913.464652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.217 3.783 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.144 3.856 14 C -0.023 4.023 15 C -0.043 4.043 16 O -0.199 6.199 17 C 0.217 3.783 18 C -0.042 4.042 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.119 4.119 23 C -0.097 4.097 24 N -0.493 5.493 25 H 0.023 0.977 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.262 0.738 29 H 0.328 0.672 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.252 0.748 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -7.914 23.352 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.109 3.891 3 H 0.030 0.970 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.309 5.309 13 C 0.015 3.985 14 C -0.144 4.144 15 C -0.114 4.114 16 O -0.086 6.086 17 C 0.013 3.987 18 C -0.043 4.043 19 C -0.109 4.109 20 C -0.140 4.140 21 C -0.114 4.114 22 C -0.136 4.136 23 C -0.117 4.117 24 N -0.223 5.223 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.268 0.732 33 H 0.140 0.860 34 H 0.171 0.829 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.450 -7.794 23.018 24.546 hybrid contribution -0.181 0.318 -1.192 1.247 sum 3.268 -7.476 21.826 23.301 Atomic orbital electron populations 1.22253 1.00194 0.99061 1.00117 1.18975 0.89933 0.93143 0.87095 0.96965 1.21412 1.30606 1.12504 0.90986 0.92848 1.25709 0.95416 0.95858 1.01852 1.69998 1.37945 1.24160 1.24098 0.85498 0.78763 0.78200 0.78782 1.20277 1.20743 1.19482 1.60794 1.57839 1.09245 1.03016 1.20110 0.99156 0.93856 0.85407 1.21779 0.91522 1.02314 0.98752 1.25490 1.00811 0.97882 0.87232 1.84474 1.32200 1.52538 1.39373 1.24291 0.77752 0.99235 0.97374 1.17534 0.95299 0.99239 0.92225 1.21282 0.93722 0.97230 0.98691 1.21431 1.01729 0.96996 0.93859 1.21801 0.92760 0.97989 0.98855 1.21466 0.97334 0.97238 0.97583 1.21439 0.99334 0.97064 0.93856 1.70460 1.34843 1.12472 1.04505 0.95838 0.95383 0.91551 0.92893 0.85586 0.88958 0.95267 0.73190 0.86011 0.82917 0.82104 0.82189 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.88 8.94 71.98 0.64 -7.24 16 2 C 0.22 11.25 2.57 44.17 0.11 11.36 16 3 H 0.01 0.69 7.80 -2.39 -0.02 0.68 16 4 C -0.52 -29.28 8.84 25.60 0.23 -29.05 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 8 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 N -0.68 -30.48 6.22 -499.47 -3.11 -33.59 16 13 C 0.14 5.51 6.02 85.56 0.52 6.02 16 14 C -0.02 -0.81 6.61 41.36 0.27 -0.53 16 15 C -0.04 -1.25 12.08 66.97 0.81 -0.44 16 16 O -0.20 -5.82 10.52 -8.40 -0.09 -5.91 16 17 C 0.22 6.77 7.90 87.33 0.69 7.46 16 18 C -0.04 -1.05 5.87 -20.10 -0.12 -1.17 16 19 C -0.09 -2.05 9.69 22.53 0.22 -1.83 16 20 C -0.12 -1.91 10.03 22.23 0.22 -1.68 16 21 C -0.10 -1.13 10.04 22.33 0.22 -0.91 16 22 C -0.12 -1.53 10.03 22.23 0.22 -1.31 16 23 C -0.10 -1.84 9.72 22.53 0.22 -1.63 16 24 N -0.49 -17.65 10.91 -293.18 -3.20 -20.85 16 25 H 0.02 1.05 7.45 -2.39 -0.02 1.03 16 26 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 27 H 0.07 3.66 6.07 -2.38 -0.01 3.64 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.33 14.89 8.46 -89.69 -0.76 14.14 16 30 H 0.09 3.28 8.06 -2.39 -0.02 3.26 16 31 H 0.03 1.16 7.44 -2.39 -0.02 1.14 16 32 H 0.25 5.19 8.06 -2.91 -0.02 5.16 16 33 H 0.12 3.09 7.83 -2.91 -0.02 3.07 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 36 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 37 H 0.14 2.30 7.90 -2.91 -0.02 2.28 16 Total: -1.00 -67.51 320.98 0.90 -66.61 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.32 Total: 20.50 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 4.71 Total: -19.94 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -6.06 Total: -107.75 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.09 Total: -5.91 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.51 0.90 -66.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610342043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.714 kcal (2) G-P(sol) polarization free energy of solvation -67.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds