Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47280 * 2 1 4 4 C 1.50702 * 109.47041 * 119.99814 * 2 1 3 5 5 H 1.08003 * 120.00336 * 119.99559 * 4 2 1 6 6 C 1.37875 * 120.00291 * 300.00049 * 4 2 1 7 7 N 1.31516 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46891 * 90.00026 * 8 6 4 10 10 H 1.48502 * 109.47087 * 209.99640 * 8 6 4 11 11 H 1.48500 * 109.47212 * 329.99802 * 8 6 4 12 12 N 1.46900 * 109.47309 * 239.99701 * 2 1 3 13 13 C 1.46892 * 111.00073 * 85.00040 * 12 2 1 14 14 C 1.50692 * 109.47486 * 180.02562 * 13 12 2 15 15 C 1.34554 * 126.08203 * 94.99958 * 14 13 12 16 16 O 1.34773 * 107.27471 * 179.74005 * 15 14 13 17 17 C 1.34426 * 107.69172 * 0.02562 * 16 15 14 18 18 C 1.47830 * 125.72705 * 179.97438 * 17 16 15 19 19 C 1.39566 * 120.14864 * 179.74842 * 18 17 16 20 20 C 1.37955 * 119.85602 * 179.71718 * 19 18 17 21 21 C 1.38360 * 120.14437 * 0.55699 * 20 19 18 22 22 C 1.38357 * 120.28807 * 359.71861 * 21 20 19 23 23 C 1.37956 * 120.14753 * 359.97438 * 22 21 20 24 24 N 1.31218 * 108.55280 * 359.97438 * 17 16 15 25 25 H 1.08998 * 109.47740 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47088 * 300.00333 * 1 2 3 27 27 H 1.08996 * 109.47145 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00245 * 180.02562 * 7 6 4 29 29 H 1.00890 * 111.00259 * 208.96017 * 12 2 1 30 30 H 1.09002 * 109.46865 * 60.00151 * 13 12 2 31 31 H 1.09002 * 109.47448 * 300.00465 * 13 12 2 32 32 H 1.08000 * 126.36072 * 359.76132 * 15 14 13 33 33 H 1.08005 * 120.06779 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.92917 * 180.27249 * 20 19 18 35 35 H 1.07993 * 119.85737 * 179.74305 * 21 20 19 36 36 H 1.08003 * 119.92537 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.07547 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4857 -2.5662 3.7121 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2224 -2.3468 14 6 2.5874 -0.5219 -3.5559 15 6 1.8283 -1.0955 -4.5074 16 8 2.6652 -1.6479 -5.4079 17 6 3.9227 -1.4074 -4.9982 18 6 5.1542 -1.8383 -5.6932 19 6 6.4058 -1.5190 -5.1644 20 6 7.5511 -1.9292 -5.8148 21 6 7.4612 -2.6455 -6.9951 22 6 6.2236 -2.9603 -7.5278 23 6 5.0705 -2.5617 -6.8839 24 7 3.8737 -0.7260 -3.8779 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7095 1.1619 3.4844 29 1 2.9172 -1.1206 -1.0287 30 1 2.7589 1.0460 -2.1181 31 1 1.0871 0.6162 -2.5525 32 1 0.7490 -1.1101 -4.5431 33 1 6.4773 -0.9557 -4.2457 34 1 8.5201 -1.6866 -5.4043 35 1 8.3608 -2.9607 -7.5026 36 1 6.1603 -3.5201 -8.4492 37 1 4.1051 -2.8084 -7.3005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610342044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = 47.284527 kcal Electronic energy + Delta-G solvation = -19414.137288 eV Core-core repulsion = 16350.910977 eV Total energy + Delta-G solvation = -3063.226312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.12826 -39.20531 -36.26524 -34.58431 -32.89247 -32.03077 -31.19541 -29.68442 -28.01963 -25.44026 -24.51616 -23.85271 -22.83300 -21.12507 -20.60299 -19.76476 -17.85802 -16.63847 -16.49799 -16.31548 -15.70991 -15.15456 -14.88727 -14.25177 -14.17947 -13.79051 -13.66177 -13.56809 -13.09887 -12.84431 -12.23650 -11.83861 -11.66807 -11.34110 -11.25702 -11.10292 -10.86970 -10.74489 -10.47883 -10.23783 -10.14033 -10.04374 -9.64525 -9.22728 -8.83972 -8.47547 -8.18950 -7.30624 -6.02397 -4.08530 0.55259 1.13902 1.88344 2.72879 2.85050 3.30792 3.37081 3.41656 3.64214 3.92758 4.41692 4.64424 4.69096 4.85133 5.03162 5.07289 5.17776 5.29000 5.30707 5.49226 5.57786 5.75261 5.78842 5.92425 6.08661 6.11595 6.22054 6.24919 6.30162 6.48048 6.64425 6.85539 7.11659 7.20173 7.47486 7.78420 7.85579 7.88996 8.26170 8.36790 8.64340 9.01173 9.57329 11.04086 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.003434 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.134296 B = 8151.413923 C = 8933.393209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.137 3.863 14 C 0.009 3.991 15 C -0.060 4.060 16 O -0.201 6.201 17 C 0.214 3.786 18 C -0.008 4.008 19 C -0.073 4.073 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.093 4.093 24 N -0.458 5.458 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.004 0.996 28 H 0.261 0.739 29 H 0.336 0.664 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.219 0.781 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.493 -4.803 -19.856 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.316 5.316 13 C 0.007 3.993 14 C -0.112 4.112 15 C -0.130 4.130 16 O -0.088 6.088 17 C 0.011 3.989 18 C -0.009 4.009 19 C -0.092 4.092 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.113 4.113 24 N -0.188 5.188 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.235 0.765 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.274 -4.737 -19.557 21.757 hybrid contribution 0.244 -0.112 0.806 0.849 sum 8.518 -4.848 -18.751 21.158 Atomic orbital electron populations 1.21729 0.97779 0.99402 0.99425 1.19135 0.92632 0.92461 0.85365 0.97928 1.21254 1.31424 1.12557 0.90401 0.92207 1.24911 0.95016 0.95016 0.99037 1.69893 1.36659 1.22905 1.23489 0.86509 0.78481 0.80094 0.82403 1.20716 1.21193 1.19837 1.60816 1.32627 1.32510 1.05612 1.20222 0.99295 0.92891 0.86923 1.21973 0.87703 1.02488 0.99053 1.24937 0.96860 1.00816 0.90435 1.84445 1.16895 1.61216 1.46209 1.23694 0.83737 0.99165 0.92346 1.17306 0.87532 1.01043 0.94995 1.21259 0.90285 0.97737 0.99887 1.21130 0.98386 0.98724 0.95673 1.21340 0.97815 0.97582 0.95845 1.21052 0.92036 1.00659 1.00327 1.21244 0.99495 0.96719 0.93839 1.70528 1.22029 1.15037 1.11241 0.94903 0.89995 0.97676 0.92912 0.84681 0.94236 0.90030 0.76469 0.84252 0.85138 0.85630 0.85382 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.19 37.16 0.34 -2.75 16 2 C 0.21 5.42 2.60 -68.87 -0.18 5.24 16 3 H 0.00 0.09 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -14.47 8.59 -34.44 -0.30 -14.77 16 5 H 0.06 1.66 7.62 -52.48 -0.40 1.26 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.68 -15.18 6.29 -109.23 -0.69 -15.86 16 13 C 0.14 2.58 6.02 -4.98 -0.03 2.55 16 14 C 0.01 0.16 6.61 -82.88 -0.55 -0.38 16 15 C -0.06 -0.87 12.08 29.43 0.36 -0.52 16 16 O -0.20 -2.99 10.52 4.08 0.04 -2.94 16 17 C 0.21 3.32 7.90 -13.89 -0.11 3.21 16 18 C -0.01 -0.10 5.87 -104.98 -0.62 -0.71 16 19 C -0.07 -0.84 9.69 -39.19 -0.38 -1.22 16 20 C -0.12 -1.09 10.03 -39.64 -0.40 -1.49 16 21 C -0.11 -0.84 10.04 -39.49 -0.40 -1.24 16 22 C -0.12 -1.01 10.03 -39.64 -0.40 -1.41 16 23 C -0.09 -0.97 9.72 -39.19 -0.38 -1.35 16 24 N -0.46 -8.08 10.91 -7.97 -0.09 -8.17 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 2.21 6.07 -51.92 -0.32 1.89 16 27 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.34 7.68 8.22 -39.30 -0.32 7.35 16 30 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 31 H 0.08 1.43 7.44 -51.93 -0.39 1.05 16 32 H 0.22 2.41 8.06 -52.49 -0.42 1.98 16 33 H 0.14 1.70 7.83 -52.48 -0.41 1.29 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.13 1.20 7.90 -52.49 -0.41 0.78 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -30.93 320.65 -8.13 -39.06 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.71 Total: 4.74 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -3.13 Total: -13.21 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.15 Total: -48.99 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.93 -8.13 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610342044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.346 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds