Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47280 * 2 1 4 4 C 1.50702 * 109.47041 * 119.99814 * 2 1 3 5 5 H 1.08003 * 120.00336 * 119.99559 * 4 2 1 6 6 C 1.37875 * 120.00291 * 300.00049 * 4 2 1 7 7 N 1.31516 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46891 * 90.00026 * 8 6 4 10 10 H 1.48502 * 109.47087 * 209.99640 * 8 6 4 11 11 H 1.48500 * 109.47212 * 329.99802 * 8 6 4 12 12 N 1.46900 * 109.47309 * 239.99701 * 2 1 3 13 13 C 1.46892 * 111.00073 * 85.00040 * 12 2 1 14 14 C 1.50692 * 109.47486 * 180.02562 * 13 12 2 15 15 C 1.34554 * 126.08203 * 94.99958 * 14 13 12 16 16 O 1.34773 * 107.27471 * 179.74005 * 15 14 13 17 17 C 1.34426 * 107.69172 * 0.02562 * 16 15 14 18 18 C 1.47830 * 125.72705 * 179.97438 * 17 16 15 19 19 C 1.39566 * 120.14864 * 179.74842 * 18 17 16 20 20 C 1.37955 * 119.85602 * 179.71718 * 19 18 17 21 21 C 1.38360 * 120.14437 * 0.55699 * 20 19 18 22 22 C 1.38357 * 120.28807 * 359.71861 * 21 20 19 23 23 C 1.37956 * 120.14753 * 359.97438 * 22 21 20 24 24 N 1.31218 * 108.55280 * 359.97438 * 17 16 15 25 25 H 1.08998 * 109.47740 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47088 * 300.00333 * 1 2 3 27 27 H 1.08996 * 109.47145 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00245 * 180.02562 * 7 6 4 29 29 H 1.00890 * 111.00259 * 208.96017 * 12 2 1 30 30 H 1.09002 * 109.46865 * 60.00151 * 13 12 2 31 31 H 1.09002 * 109.47448 * 300.00465 * 13 12 2 32 32 H 1.08000 * 126.36072 * 359.76132 * 15 14 13 33 33 H 1.08005 * 120.06779 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.92917 * 180.27249 * 20 19 18 35 35 H 1.07993 * 119.85737 * 179.74305 * 21 20 19 36 36 H 1.08003 * 119.92537 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.07547 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4857 -2.5662 3.7121 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2224 -2.3468 14 6 2.5874 -0.5219 -3.5559 15 6 1.8283 -1.0955 -4.5074 16 8 2.6652 -1.6479 -5.4079 17 6 3.9227 -1.4074 -4.9982 18 6 5.1542 -1.8383 -5.6932 19 6 6.4058 -1.5190 -5.1644 20 6 7.5511 -1.9292 -5.8148 21 6 7.4612 -2.6455 -6.9951 22 6 6.2236 -2.9603 -7.5278 23 6 5.0705 -2.5617 -6.8839 24 7 3.8737 -0.7260 -3.8779 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7095 1.1619 3.4844 29 1 2.9172 -1.1206 -1.0287 30 1 2.7589 1.0460 -2.1181 31 1 1.0871 0.6162 -2.5525 32 1 0.7490 -1.1101 -4.5431 33 1 6.4773 -0.9557 -4.2457 34 1 8.5201 -1.6866 -5.4043 35 1 8.3608 -2.9607 -7.5026 36 1 6.1603 -3.5201 -8.4492 37 1 4.1051 -2.8084 -7.3005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610342044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = 26.019868 kcal Electronic energy + Delta-G solvation = -19415.059393 eV Core-core repulsion = 16350.910977 eV Total energy + Delta-G solvation = -3064.148416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.31815 -39.95091 -38.01299 -36.02401 -34.53307 -33.30203 -31.94233 -31.17584 -29.51512 -27.42822 -26.16088 -24.82537 -23.68073 -22.18914 -21.90693 -21.61211 -19.01610 -18.35965 -17.70796 -17.39791 -16.92690 -16.53253 -16.08290 -15.92478 -15.46302 -15.29607 -14.74978 -14.51934 -14.38510 -13.95170 -13.88240 -13.47320 -13.12678 -12.79610 -12.77798 -12.39265 -12.35370 -12.26479 -12.19664 -12.05583 -11.93587 -11.58656 -10.94327 -10.66948 -10.58175 -9.95666 -9.26507 -9.13517 -8.15783 -6.30014 -0.34543 0.41367 0.81039 1.40696 1.41317 1.52490 1.63813 1.67224 2.40284 2.82907 2.86039 3.12722 3.64322 3.77792 3.93252 4.00600 4.05297 4.23080 4.45898 4.46782 4.50608 4.61789 4.74631 4.81671 4.84895 4.94289 5.06890 5.08496 5.13748 5.18794 5.44319 5.45656 5.48786 5.52894 5.63281 5.83464 5.95181 6.20341 6.38145 6.65174 6.68614 6.90781 7.40062 8.89910 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.003434 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.134296 B = 8151.413923 C = 8933.393209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.028 1.028 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.270 1.270 12 N -0.678 5.678 13 C 0.145 3.855 14 C -0.024 4.024 15 C -0.041 4.041 16 O -0.199 6.199 17 C 0.218 3.782 18 C -0.042 4.042 19 C -0.091 4.091 20 C -0.123 4.123 21 C -0.096 4.096 22 C -0.118 4.118 23 C -0.097 4.097 24 N -0.496 5.496 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.329 0.671 30 H 0.022 0.978 31 H 0.097 0.903 32 H 0.255 0.745 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.387 -6.401 -21.707 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.011 1.011 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.194 1.194 12 N -0.309 5.309 13 C 0.015 3.985 14 C -0.145 4.145 15 C -0.112 4.112 16 O -0.085 6.085 17 C 0.014 3.986 18 C -0.043 4.043 19 C -0.110 4.110 20 C -0.141 4.141 21 C -0.114 4.114 22 C -0.136 4.136 23 C -0.116 4.116 24 N -0.225 5.225 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.041 0.959 31 H 0.115 0.885 32 H 0.271 0.729 33 H 0.138 0.862 34 H 0.170 0.830 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.165 -6.328 -21.418 24.140 hybrid contribution 0.067 0.371 1.246 1.302 sum 9.232 -5.957 -20.172 22.970 Atomic orbital electron populations 1.21541 0.96939 0.99136 0.99526 1.18966 0.93234 0.90767 0.86322 1.01072 1.21562 1.31904 1.12763 0.91815 0.92791 1.25707 0.95076 0.95693 1.01933 1.70009 1.37248 1.23893 1.24304 0.85486 0.78081 0.78959 0.78677 1.20146 1.20423 1.19445 1.60766 1.32085 1.32764 1.05265 1.20121 0.99837 0.92038 0.86492 1.21766 0.88382 1.04691 0.99630 1.25505 0.98029 0.98638 0.89023 1.84472 1.16815 1.61114 1.46102 1.24277 0.84654 0.97948 0.91737 1.17531 0.86709 1.03482 0.96568 1.21279 0.91187 0.98638 0.99926 1.21427 0.98264 0.98328 0.96033 1.21802 0.99132 0.95598 0.94856 1.21472 0.91284 0.99828 1.01003 1.21441 1.00957 0.96222 0.92993 1.70466 1.22532 1.16756 1.12794 0.95149 0.92309 0.95109 0.92679 0.85506 0.95943 0.88502 0.72922 0.86169 0.82992 0.82085 0.82107 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 9.19 71.98 0.66 -4.98 16 2 C 0.22 11.33 2.60 44.17 0.11 11.45 16 3 H -0.03 -1.64 7.80 -2.39 -0.02 -1.66 16 4 C -0.54 -30.93 8.59 25.60 0.22 -30.71 16 5 H 0.05 3.07 7.62 -2.91 -0.02 3.04 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -53.34 11.32 21.45 0.24 -53.09 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.68 -30.83 6.29 -499.49 -3.14 -33.97 16 13 C 0.14 5.60 6.02 85.56 0.52 6.12 16 14 C -0.02 -0.85 6.61 41.36 0.27 -0.58 16 15 C -0.04 -1.16 12.08 66.98 0.81 -0.35 16 16 O -0.20 -5.76 10.52 -8.33 -0.09 -5.85 16 17 C 0.22 6.85 7.90 87.33 0.69 7.54 16 18 C -0.04 -1.07 5.87 -20.10 -0.12 -1.18 16 19 C -0.09 -2.14 9.69 22.52 0.22 -1.92 16 20 C -0.12 -1.99 10.03 22.23 0.22 -1.76 16 21 C -0.10 -1.16 10.04 22.33 0.22 -0.94 16 22 C -0.12 -1.55 10.03 22.23 0.22 -1.32 16 23 C -0.10 -1.84 9.72 22.53 0.22 -1.62 16 24 N -0.50 -18.14 10.91 -293.19 -3.20 -21.34 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 3.21 6.07 -2.38 -0.01 3.19 16 27 H 0.03 1.32 7.45 -2.39 -0.02 1.30 16 28 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 29 H 0.33 15.61 8.22 -89.70 -0.74 14.88 16 30 H 0.02 0.94 8.06 -2.39 -0.02 0.92 16 31 H 0.10 3.38 7.44 -2.39 -0.02 3.36 16 32 H 0.25 4.96 8.06 -2.91 -0.02 4.93 16 33 H 0.12 3.18 7.83 -2.91 -0.02 3.16 16 34 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 36 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.14 2.30 7.90 -2.91 -0.02 2.28 16 Total: -1.00 -68.46 320.65 0.91 -67.56 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.34 Total: 19.19 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 4.72 Total: -18.95 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -6.10 Total: -108.41 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.09 Total: -5.85 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.46 0.91 -67.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610342044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.576 kcal (2) G-P(sol) polarization free energy of solvation -68.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds