Wall clock time and date at job start Mon Mar 30 2020 01:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39594 * 120.10934 * 331.38630 * 3 2 1 5 5 C 1.38000 * 120.00526 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.22315 * 359.69884 * 5 4 3 7 7 C 1.38984 * 120.21098 * 0.55996 * 6 5 4 8 8 N 1.39699 * 120.00556 * 179.74622 * 7 6 5 9 9 C 1.46504 * 119.99831 * 179.72278 * 8 7 6 10 10 C 1.46499 * 119.99787 * 359.71637 * 8 7 6 11 11 C 1.50701 * 109.46992 * 90.00296 * 10 8 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 8 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46979 * 120.00025 * 19 17 15 22 22 H 1.48496 * 109.47443 * 239.99733 * 19 17 15 23 23 C 1.38684 * 119.99090 * 359.46209 * 7 6 5 24 24 H 4.52048 * 14.03217 * 359.97438 * 4 2 1 25 25 H 1.07995 * 119.99430 * 359.97438 * 4 3 2 26 26 H 1.08005 * 119.88913 * 179.97438 * 5 4 3 27 27 H 1.08000 * 119.89497 * 180.27591 * 6 5 4 28 28 H 1.09000 * 109.46899 * 269.99315 * 9 8 7 29 29 H 1.08992 * 109.47334 * 29.99279 * 9 8 7 30 30 H 1.08994 * 109.46680 * 149.99903 * 9 8 7 31 31 H 1.09002 * 109.47391 * 330.00286 * 10 8 7 32 32 H 1.09001 * 109.46813 * 210.00342 * 10 8 7 33 33 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 35 35 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 36 36 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 37 37 H 1.07993 * 120.11172 * 180.23451 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3067 -1.0592 0.5783 5 6 4.6867 -1.0561 0.5776 6 6 5.3799 -0.0089 -0.0001 7 6 4.6915 1.0536 -0.5737 8 7 5.3964 2.1122 -1.1516 9 6 4.6706 3.2291 -1.7616 10 6 6.8614 2.1055 -1.1475 11 6 7.3640 1.4223 -2.3931 12 8 6.5761 0.9846 -3.2046 13 7 8.6892 1.2988 -2.6058 14 6 9.1778 0.6351 -3.8170 15 6 10.6848 0.6281 -3.8127 16 1 11.2246 1.0731 -2.9899 17 6 11.3745 0.0536 -4.8593 18 7 10.7173 -0.4878 -5.8615 19 14 13.2425 0.0456 -4.8543 20 1 13.7371 0.7131 -3.6235 21 1 13.7316 -1.3562 -4.8873 22 1 13.7439 0.7729 -6.0480 23 6 3.3047 1.0598 -0.5775 24 1 -1.0500 -0.0006 0.0009 25 1 2.7688 -1.8811 1.0270 26 1 5.2270 -1.8768 1.0259 27 1 6.4599 -0.0140 -0.0016 28 1 4.4909 3.0136 -2.8148 29 1 3.7174 3.3652 -1.2508 30 1 5.2636 4.1393 -1.6730 31 1 7.2198 1.5690 -0.2690 32 1 7.2292 3.1313 -1.1220 33 1 9.3193 1.6492 -1.9570 34 1 8.8102 -0.3907 -3.8428 35 1 8.8191 1.1718 -4.6953 36 1 11.2025 -0.8923 -6.5976 37 1 2.7678 1.8825 -1.0260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728574305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:09 Heat of formation + Delta-G solvation = 52.645803 kcal Electronic energy + Delta-G solvation = -19546.212137 eV Core-core repulsion = 16483.218308 eV Total energy + Delta-G solvation = -3062.993829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86673 -38.58105 -36.12230 -34.15680 -33.58026 -32.37102 -30.75173 -29.85857 -28.87565 -26.99785 -25.00571 -23.23571 -22.44141 -21.19767 -19.83509 -18.70662 -17.27483 -17.08506 -15.99996 -15.76101 -15.59565 -14.98697 -14.88724 -14.34156 -14.17320 -13.94645 -13.65181 -13.49915 -12.96053 -12.65660 -12.29517 -12.08534 -11.98594 -11.63493 -11.51497 -11.30510 -11.04645 -10.96057 -10.90512 -10.53618 -10.34521 -9.95062 -9.40586 -9.05503 -8.76489 -8.56976 -7.91323 -7.22434 -6.18857 -4.26149 1.02605 1.63229 2.64274 3.01390 3.10998 3.21569 3.28815 3.30592 3.31656 4.05265 4.16006 4.21550 4.37116 4.87975 4.98644 5.13692 5.17242 5.24115 5.25973 5.38334 5.46817 5.55480 5.59791 5.62043 5.78700 5.84466 6.09211 6.24400 6.48821 6.60575 6.82809 7.17264 7.30317 7.40925 7.44421 7.48752 7.50037 7.64794 7.94541 8.59084 8.75821 9.07122 9.40721 10.91286 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032173 B = 0.003342 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.079553 B = 8376.680910 C = 8632.608927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C 0.044 3.956 4 C -0.157 4.157 5 C -0.071 4.071 6 C -0.181 4.181 7 C 0.230 3.770 8 N -0.609 5.609 9 C 0.095 3.905 10 C 0.102 3.898 11 C 0.472 3.528 12 O -0.541 6.541 13 N -0.714 5.714 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.172 4.172 24 H 0.222 0.778 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.390 0.610 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 5.020 14.362 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C 0.044 3.956 4 C -0.177 4.177 5 C -0.089 4.089 6 C -0.203 4.203 7 C 0.128 3.872 8 N -0.318 5.318 9 C -0.048 4.048 10 C -0.026 4.026 11 C 0.255 3.745 12 O -0.419 6.419 13 N -0.363 5.363 14 C 0.130 3.870 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.141 4.141 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.194 4.194 24 H 0.239 0.761 25 H 0.138 0.862 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.222 0.778 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.667 4.771 13.482 19.781 hybrid contribution 1.252 0.064 -0.022 1.254 sum -12.414 4.835 13.460 18.938 Atomic orbital electron populations 1.24808 0.95705 1.00178 1.00242 1.20167 0.92121 1.00580 1.00663 1.15636 0.86043 0.95023 0.98924 1.20865 0.94027 0.98682 1.04157 1.20780 0.93598 0.97263 0.97307 1.20819 0.99998 0.94991 1.04471 1.17581 0.90615 0.87726 0.91270 1.45919 1.03520 1.20782 1.61589 1.21667 0.96760 0.88077 0.98313 1.21413 0.80972 1.02494 0.97691 1.21209 0.83504 0.81283 0.88550 1.90680 1.55465 1.49064 1.46669 1.46490 1.05487 1.58629 1.25702 1.19086 0.93834 0.92772 0.81322 1.21258 0.90655 1.39403 1.06811 0.91833 1.24965 0.99169 0.94832 0.95107 1.69985 1.35839 1.37148 1.09270 0.86363 0.84568 0.77888 0.78101 1.19620 1.20778 1.20800 1.20588 0.91877 1.00267 1.06690 0.76087 0.86240 0.85627 0.85855 0.92744 0.91421 0.91499 0.88145 0.88117 0.77772 0.95621 0.95689 0.92480 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.14 -1.72 13.24 -38.84 -0.51 -2.24 16 3 C 0.04 0.61 5.72 -107.03 -0.61 0.00 16 4 C -0.16 -2.02 9.75 -39.16 -0.38 -2.40 16 5 C -0.07 -0.90 10.02 -39.67 -0.40 -1.30 16 6 C -0.18 -2.56 9.20 -39.31 -0.36 -2.92 16 7 C 0.23 3.38 6.55 -83.83 -0.55 2.83 16 8 N -0.61 -8.50 2.50 -181.04 -0.45 -8.95 16 9 C 0.09 1.10 10.23 59.85 0.61 1.71 16 10 C 0.10 1.36 5.67 -5.19 -0.03 1.33 16 11 C 0.47 9.08 7.90 -10.98 -0.09 8.99 16 12 O -0.54 -13.04 16.43 5.56 0.09 -12.95 16 13 N -0.71 -14.46 5.55 -61.47 -0.34 -14.80 16 14 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 15 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 19 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.17 -2.41 8.91 -38.98 -0.35 -2.76 16 24 H 0.22 1.29 7.80 -54.09 -0.42 0.87 16 25 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 27 H 0.12 1.67 6.13 -52.49 -0.32 1.34 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.66 6.19 -51.93 -0.32 0.34 16 30 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 31 H 0.10 1.13 6.20 -51.93 -0.32 0.81 16 32 H 0.10 1.05 7.89 -51.93 -0.41 0.64 16 33 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 1.58 6.13 -52.49 -0.32 1.26 16 LS Contribution 328.23 15.07 4.95 4.95 Total: -1.00 -34.20 328.23 -7.10 -41.30 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.52 Total: 4.93 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.54 Total: -4.80 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.06 Total: -49.08 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.20 -7.10 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728574305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.941 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds