Wall clock time and date at job start Mon Mar 30 2020 01:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39594 * 120.10934 * 331.38630 * 3 2 1 5 5 C 1.38000 * 120.00526 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.22315 * 359.69884 * 5 4 3 7 7 C 1.38984 * 120.21098 * 0.55996 * 6 5 4 8 8 N 1.39699 * 120.00556 * 179.74622 * 7 6 5 9 9 C 1.46504 * 119.99831 * 179.72278 * 8 7 6 10 10 C 1.46499 * 119.99787 * 359.71637 * 8 7 6 11 11 C 1.50701 * 109.46992 * 90.00296 * 10 8 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 8 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46979 * 120.00025 * 19 17 15 22 22 H 1.48496 * 109.47443 * 239.99733 * 19 17 15 23 23 C 1.38684 * 119.99090 * 359.46209 * 7 6 5 24 24 H 4.52048 * 14.03217 * 359.97438 * 4 2 1 25 25 H 1.07995 * 119.99430 * 359.97438 * 4 3 2 26 26 H 1.08005 * 119.88913 * 179.97438 * 5 4 3 27 27 H 1.08000 * 119.89497 * 180.27591 * 6 5 4 28 28 H 1.09000 * 109.46899 * 269.99315 * 9 8 7 29 29 H 1.08992 * 109.47334 * 29.99279 * 9 8 7 30 30 H 1.08994 * 109.46680 * 149.99903 * 9 8 7 31 31 H 1.09002 * 109.47391 * 330.00286 * 10 8 7 32 32 H 1.09001 * 109.46813 * 210.00342 * 10 8 7 33 33 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 35 35 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 36 36 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 37 37 H 1.07993 * 120.11172 * 180.23451 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3067 -1.0592 0.5783 5 6 4.6867 -1.0561 0.5776 6 6 5.3799 -0.0089 -0.0001 7 6 4.6915 1.0536 -0.5737 8 7 5.3964 2.1122 -1.1516 9 6 4.6706 3.2291 -1.7616 10 6 6.8614 2.1055 -1.1475 11 6 7.3640 1.4223 -2.3931 12 8 6.5761 0.9846 -3.2046 13 7 8.6892 1.2988 -2.6058 14 6 9.1778 0.6351 -3.8170 15 6 10.6848 0.6281 -3.8127 16 1 11.2246 1.0731 -2.9899 17 6 11.3745 0.0536 -4.8593 18 7 10.7173 -0.4878 -5.8615 19 14 13.2425 0.0456 -4.8543 20 1 13.7371 0.7131 -3.6235 21 1 13.7316 -1.3562 -4.8873 22 1 13.7439 0.7729 -6.0480 23 6 3.3047 1.0598 -0.5775 24 1 -1.0500 -0.0006 0.0009 25 1 2.7688 -1.8811 1.0270 26 1 5.2270 -1.8768 1.0259 27 1 6.4599 -0.0140 -0.0016 28 1 4.4909 3.0136 -2.8148 29 1 3.7174 3.3652 -1.2508 30 1 5.2636 4.1393 -1.6730 31 1 7.2198 1.5690 -0.2690 32 1 7.2292 3.1313 -1.1220 33 1 9.3193 1.6492 -1.9570 34 1 8.8102 -0.3907 -3.8428 35 1 8.8191 1.1718 -4.6953 36 1 11.2025 -0.8923 -6.5976 37 1 2.7678 1.8825 -1.0260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728574305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:09 Heat of formation + Delta-G solvation = 30.176524 kcal Electronic energy + Delta-G solvation = -19547.186478 eV Core-core repulsion = 16483.218308 eV Total energy + Delta-G solvation = -3063.968170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06128 -39.99740 -37.23963 -36.05921 -34.48713 -34.35584 -31.83671 -30.86181 -30.19283 -28.69195 -26.18817 -24.66804 -23.91174 -22.29363 -21.41138 -19.75314 -18.96337 -18.03407 -17.61418 -17.26862 -16.72312 -16.52941 -16.16221 -15.87329 -15.41798 -15.22711 -14.72332 -14.63495 -14.31831 -14.05253 -13.98312 -13.81672 -12.97239 -12.91215 -12.88456 -12.72635 -12.59385 -12.27020 -12.22021 -12.00467 -11.45981 -11.42444 -11.17012 -10.82319 -10.50526 -9.82200 -9.56565 -8.33200 -8.26205 -6.46485 0.03843 0.60522 1.43105 1.44148 1.57670 1.76163 1.77112 2.00247 2.15655 2.35130 2.70637 3.05399 3.11456 3.39739 3.91527 4.00352 4.01905 4.16509 4.31575 4.33887 4.42554 4.58039 4.67274 4.71900 4.81455 4.89624 5.10694 5.20382 5.22769 5.23974 5.48983 5.49591 5.60614 5.69182 5.84540 5.85935 6.19815 6.45231 6.59898 6.65714 6.94448 7.23558 7.52767 8.82722 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032173 B = 0.003342 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.079553 B = 8376.680910 C = 8632.608927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.197 4.197 3 C 0.035 3.965 4 C -0.165 4.165 5 C -0.072 4.072 6 C -0.201 4.201 7 C 0.212 3.788 8 N -0.616 5.616 9 C 0.092 3.908 10 C 0.114 3.886 11 C 0.469 3.531 12 O -0.596 6.596 13 N -0.706 5.706 14 C 0.268 3.732 15 C -0.552 4.552 16 H 0.087 0.913 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.985 3.015 20 H -0.250 1.250 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.186 4.186 24 H 0.263 0.737 25 H 0.136 0.864 26 H 0.149 0.851 27 H 0.126 0.874 28 H 0.026 0.974 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.410 0.590 34 H -0.018 1.018 35 H -0.017 1.017 36 H 0.268 0.732 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.900 5.952 16.600 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.197 4.197 3 C 0.034 3.966 4 C -0.185 4.185 5 C -0.091 4.091 6 C -0.223 4.223 7 C 0.110 3.890 8 N -0.325 5.325 9 C -0.051 4.051 10 C -0.013 4.013 11 C 0.255 3.745 12 O -0.477 6.477 13 N -0.358 5.358 14 C 0.145 3.855 15 C -0.590 4.590 16 H 0.105 0.895 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.808 3.192 20 H -0.173 1.173 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.208 4.208 24 H 0.279 0.721 25 H 0.154 0.846 26 H 0.167 0.833 27 H 0.144 0.856 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.246 0.754 34 H 0.000 1.000 35 H 0.001 0.999 36 H 0.077 0.923 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.336 5.735 15.782 21.443 hybrid contribution 0.947 -0.266 -0.722 1.220 sum -12.389 5.469 15.060 20.253 Atomic orbital electron populations 1.25790 0.96434 0.97275 0.97135 1.20459 0.92670 1.03272 1.03341 1.15921 0.87186 0.95035 0.98465 1.21149 0.94290 0.99028 1.04054 1.21090 0.93822 0.97460 0.96704 1.21016 1.00335 0.95591 1.05367 1.17833 0.91108 0.88272 0.91769 1.46125 1.03755 1.21100 1.61500 1.21788 0.98171 0.88404 0.96715 1.21508 0.80868 1.04218 0.94701 1.22439 0.82312 0.79972 0.89748 1.90657 1.56672 1.51250 1.49133 1.46206 1.06758 1.58431 1.24359 1.18478 0.94198 0.90304 0.82517 1.21665 0.90720 1.39151 1.07487 0.89505 1.26101 1.05110 0.94110 0.94503 1.70153 1.38377 1.38356 1.10315 0.85105 0.77256 0.77961 0.78855 1.17341 1.20602 1.20566 1.20751 0.91927 1.00908 1.07245 0.72085 0.84579 0.83343 0.85579 0.95513 0.89731 0.88771 0.85407 0.84016 0.75363 1.00011 0.99899 0.92327 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 19.25 74.32 1.43 -1.24 16 2 C -0.20 -4.87 13.24 30.02 0.40 -4.47 16 3 C 0.03 0.96 5.72 -21.42 -0.12 0.83 16 4 C -0.17 -4.19 9.75 22.54 0.22 -3.97 16 5 C -0.07 -1.80 10.02 22.21 0.22 -1.58 16 6 C -0.20 -5.64 9.20 22.45 0.21 -5.44 16 7 C 0.21 6.21 6.55 38.17 0.25 6.46 16 8 N -0.62 -16.70 2.50 -726.70 -1.81 -18.51 16 9 C 0.09 2.06 10.23 127.77 1.31 3.37 16 10 C 0.11 2.85 5.67 85.63 0.49 3.33 16 11 C 0.47 18.19 7.90 87.66 0.69 18.88 16 12 O -0.60 -30.03 16.43 -3.03 -0.05 -30.08 16 13 N -0.71 -28.75 5.55 -466.78 -2.59 -31.34 16 14 C 0.27 14.70 5.43 85.63 0.46 15.17 16 15 C -0.55 -29.72 9.28 25.60 0.24 -29.49 16 16 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 19 Si 0.99 42.05 29.54 68.60 2.03 44.08 16 20 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 23 C -0.19 -5.28 8.91 22.66 0.20 -5.07 16 24 H 0.26 1.96 7.80 -4.42 -0.03 1.93 16 25 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 26 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.13 3.33 6.13 -2.91 -0.02 3.31 16 28 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.58 6.19 -2.39 -0.01 1.56 16 30 H 0.09 1.57 7.89 -2.39 -0.02 1.55 16 31 H 0.13 2.55 6.20 -2.39 -0.01 2.53 16 32 H 0.14 2.43 7.89 -2.39 -0.02 2.41 16 33 H 0.41 13.19 8.32 -92.71 -0.77 12.41 16 34 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.13 3.35 6.13 -2.91 -0.02 3.34 16 Total: -1.00 -79.05 328.23 4.63 -74.42 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.31 Total: 20.52 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 6.46 Total: -2.69 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -4.12 Total: -106.25 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.08 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -79.05 4.63 -74.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728574305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.595 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds