Wall clock time and date at job start Mon Mar 30 2020 01:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39990 * 120.45776 * 178.14351 * 3 2 1 5 5 C 1.38217 * 118.36718 * 179.97438 * 4 3 2 6 6 C 1.39494 * 119.20582 * 0.02562 * 5 4 3 7 7 C 1.47988 * 119.57092 * 180.02562 * 6 5 4 8 8 O 1.21539 * 119.99867 * 353.10955 * 7 6 5 9 9 N 1.34773 * 120.00509 * 173.10653 * 7 6 5 10 10 C 1.46506 * 119.99525 * 2.91203 * 9 7 6 11 11 C 1.50703 * 109.46760 * 82.60209 * 10 9 7 12 12 H 1.07997 * 120.00370 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99738 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99833 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99952 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47131 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47034 * 119.99888 * 15 13 11 18 18 H 1.48495 * 109.47433 * 239.99877 * 15 13 11 19 19 C 1.46496 * 120.00463 * 182.91361 * 9 7 6 20 20 C 1.52999 * 109.47159 * 114.96650 * 19 9 7 21 21 C 1.52992 * 109.47289 * 234.96694 * 19 9 7 22 22 N 1.32822 * 120.86207 * 0.02562 * 6 5 4 23 23 C 1.31299 * 121.78625 * 359.97438 * 22 6 5 24 24 H 4.52942 * 13.94636 * 0.02562 * 4 2 1 25 25 H 1.08004 * 120.81751 * 0.25756 * 4 3 2 26 26 H 1.07994 * 120.39977 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.46731 * 202.59472 * 10 9 7 28 28 H 1.08999 * 109.47029 * 322.59868 * 10 9 7 29 29 H 0.97008 * 119.99593 * 180.02562 * 14 13 11 30 30 H 1.09003 * 109.46892 * 354.97124 * 19 9 7 31 31 H 1.09004 * 109.47342 * 60.00327 * 20 19 9 32 32 H 1.09006 * 109.47299 * 180.02562 * 20 19 9 33 33 H 1.09000 * 109.47550 * 299.99936 * 20 19 9 34 34 H 1.09004 * 109.47244 * 60.00064 * 21 19 9 35 35 H 1.09003 * 109.47580 * 179.97438 * 21 19 9 36 36 H 1.09003 * 109.47505 * 300.00055 * 21 19 9 37 37 H 1.08005 * 119.64610 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3151 1.2070 -0.0391 5 6 4.6964 1.1573 -0.0369 6 6 5.3327 -0.0834 0.0033 7 6 6.8113 -0.1461 0.0065 8 8 7.4628 0.8676 -0.1517 9 7 7.4354 -1.3272 0.1849 10 6 6.6512 -2.5582 0.3119 11 6 6.2854 -3.0644 -1.0596 12 1 6.6047 -2.5231 -1.9379 13 6 5.5430 -4.2186 -1.1931 14 7 5.1538 -4.8774 -0.1235 15 14 5.0890 -4.8457 -2.8931 16 1 5.6432 -3.9303 -3.9227 17 1 5.6529 -6.2059 -3.0858 18 1 3.6107 -4.8998 -3.0222 19 6 8.8979 -1.3802 0.2520 20 6 9.3283 -1.8345 1.6481 21 6 9.4206 -2.3707 -0.7903 22 7 4.6289 -1.2093 0.0387 23 6 3.3159 -1.2045 0.0380 24 1 -1.0500 -0.0011 0.0005 25 1 2.7956 2.1536 -0.0656 26 1 5.2761 2.0680 -0.0668 27 1 7.2411 -3.3127 0.8322 28 1 5.7425 -2.3533 0.8780 29 1 4.6318 -5.6896 -0.2175 30 1 9.3069 -0.3903 0.0499 31 1 8.9192 -2.8244 1.8503 32 1 10.4165 -1.8735 1.6982 33 1 8.9559 -1.1289 2.3908 34 1 9.1140 -2.0470 -1.7850 35 1 10.5088 -2.4098 -0.7408 36 1 9.0116 -3.3606 -0.5882 37 1 2.7783 -2.1407 0.0671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728864701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:57 Heat of formation + Delta-G solvation = 71.642016 kcal Electronic energy + Delta-G solvation = -20895.161118 eV Core-core repulsion = 17832.991026 eV Total energy + Delta-G solvation = -3062.170092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.20955 -38.53381 -35.81153 -34.18114 -32.80118 -31.89077 -31.28025 -29.94327 -27.13541 -26.53895 -24.75228 -23.21050 -22.84296 -21.24742 -18.89217 -18.63095 -16.94254 -16.47387 -16.19758 -15.43365 -15.25287 -14.54929 -14.47115 -14.08139 -13.50827 -13.39048 -13.04404 -13.00321 -12.41469 -12.24755 -12.13216 -11.61996 -11.57798 -11.38195 -11.23416 -10.90939 -10.82895 -10.72292 -10.54379 -10.29188 -9.87944 -9.55293 -9.45870 -9.36303 -8.55484 -8.46864 -8.07801 -7.58288 -5.97740 -3.95230 0.75240 1.63154 2.76581 2.92659 3.28928 3.37734 3.42087 3.64740 3.80803 4.27358 4.44213 4.48716 4.85653 5.06868 5.18309 5.38422 5.43602 5.47874 5.55820 5.71020 5.85347 5.93762 6.12423 6.14627 6.20285 6.25636 6.35708 6.40393 6.44093 6.74270 6.89758 6.92929 7.04649 7.53009 7.59089 7.81225 7.95629 8.30900 8.35353 8.42175 8.93056 9.07667 9.63625 11.10422 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.008599 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.203728 B = 3255.367072 C = 4861.944531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.135 4.135 3 C -0.041 4.041 4 C -0.073 4.073 5 C -0.122 4.122 6 C 0.091 3.909 7 C 0.563 3.437 8 O -0.574 6.574 9 N -0.567 5.567 10 C 0.227 3.773 11 C -0.488 4.488 12 H 0.051 0.949 13 C 0.067 3.933 14 N -0.891 5.891 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.131 3.869 20 C -0.158 4.158 21 C -0.151 4.151 22 N -0.374 5.374 23 C 0.123 3.877 24 H 0.224 0.776 25 H 0.136 0.864 26 H 0.145 0.855 27 H 0.027 0.973 28 H 0.082 0.918 29 H 0.258 0.742 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 7.475 2.415 8.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.044 4.044 4 C -0.099 4.099 5 C -0.143 4.143 6 C -0.047 4.047 7 C 0.350 3.650 8 O -0.456 6.456 9 N -0.295 5.295 10 C 0.108 3.892 11 C -0.528 4.528 12 H 0.069 0.931 13 C -0.134 4.134 14 N -0.531 5.531 15 Si 0.709 3.291 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.212 1.212 19 C 0.028 3.972 20 C -0.216 4.216 21 C -0.209 4.209 22 N -0.083 5.083 23 C -0.037 4.037 24 H 0.240 0.760 25 H 0.154 0.846 26 H 0.163 0.837 27 H 0.045 0.955 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.184 6.995 2.422 7.718 hybrid contribution -1.148 0.147 -1.148 1.630 sum -3.332 7.143 1.274 7.984 Atomic orbital electron populations 1.24797 0.95640 0.99733 0.99916 1.19889 0.91750 1.00996 1.00937 1.17306 0.87642 0.95476 1.03950 1.21438 0.93517 0.97337 0.97593 1.21947 0.94236 0.99148 0.99000 1.21459 0.95101 0.89419 0.98688 1.17832 0.85896 0.83657 0.77597 1.90666 1.66179 1.35131 1.53599 1.48371 1.06218 1.08774 1.66159 1.20094 0.91623 0.79204 0.98260 1.21265 1.32009 1.07496 0.91980 0.93100 1.24735 0.96015 0.96757 0.95875 1.69933 1.38025 1.17529 1.27609 0.86721 0.78198 0.78698 0.85468 1.20093 1.21209 1.21168 1.20951 0.80911 1.00278 0.95086 1.22126 1.00551 1.02211 0.96675 1.22035 0.98960 1.00951 0.98909 1.68913 1.06416 1.26764 1.06233 1.23316 0.90205 0.96514 0.93648 0.75961 0.84625 0.83741 0.95530 0.90134 0.93196 0.89562 0.91708 0.92260 0.93033 0.92593 0.93162 0.90681 0.82104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 19.25 29.55 0.57 -1.58 16 2 C -0.13 -1.96 13.28 -38.83 -0.52 -2.47 16 3 C -0.04 -0.67 5.75 -106.68 -0.61 -1.28 16 4 C -0.07 -1.09 9.89 -38.93 -0.39 -1.47 16 5 C -0.12 -2.06 9.61 -39.12 -0.38 -2.43 16 6 C 0.09 1.86 6.62 -82.97 -0.55 1.31 16 7 C 0.56 12.33 7.58 -12.27 -0.09 12.24 16 8 O -0.57 -13.02 15.66 5.33 0.08 -12.94 16 9 N -0.57 -12.25 2.38 -168.52 -0.40 -12.65 16 10 C 0.23 5.42 3.90 -5.19 -0.02 5.40 16 11 C -0.49 -12.58 7.07 -34.44 -0.24 -12.82 16 12 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 13 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 15 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.13 2.46 3.22 -67.94 -0.22 2.24 16 20 C -0.16 -2.54 9.26 37.16 0.34 -2.19 16 21 C -0.15 -2.71 8.68 37.15 0.32 -2.38 16 22 N -0.37 -7.95 4.91 -9.49 -0.05 -8.00 16 23 C 0.12 2.31 10.92 -17.15 -0.19 2.12 16 24 H 0.22 1.61 7.80 -54.09 -0.42 1.19 16 25 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 26 H 0.14 2.22 7.64 -52.49 -0.40 1.82 16 27 H 0.03 0.67 6.47 -51.93 -0.34 0.33 16 28 H 0.08 2.03 5.28 -52.14 -0.28 1.75 16 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 31 H 0.06 1.10 6.92 -51.93 -0.36 0.74 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.48 7.10 -51.93 -0.37 1.12 16 37 H 0.16 2.97 8.06 -52.48 -0.42 2.55 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -29.41 320.49 -6.48 -35.90 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.60 Total: 2.05 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.06 Total: -1.67 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.29 Total: -44.07 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.41 -6.48 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728864701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.537 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds