Wall clock time and date at job start Mon Mar 30 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39990 * 120.45776 * 178.14351 * 3 2 1 5 5 C 1.38217 * 118.36718 * 179.97438 * 4 3 2 6 6 C 1.39494 * 119.20582 * 0.02562 * 5 4 3 7 7 C 1.47988 * 119.57092 * 180.02562 * 6 5 4 8 8 O 1.21539 * 119.99867 * 353.10955 * 7 6 5 9 9 N 1.34773 * 120.00509 * 173.10653 * 7 6 5 10 10 C 1.46506 * 119.99525 * 2.91203 * 9 7 6 11 11 C 1.50703 * 109.46760 * 82.60209 * 10 9 7 12 12 H 1.07997 * 120.00370 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99738 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99833 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99952 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47131 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47034 * 119.99888 * 15 13 11 18 18 H 1.48495 * 109.47433 * 239.99877 * 15 13 11 19 19 C 1.46496 * 120.00463 * 182.91361 * 9 7 6 20 20 C 1.52999 * 109.47159 * 114.96650 * 19 9 7 21 21 C 1.52992 * 109.47289 * 234.96694 * 19 9 7 22 22 N 1.32822 * 120.86207 * 0.02562 * 6 5 4 23 23 C 1.31299 * 121.78625 * 359.97438 * 22 6 5 24 24 H 4.52942 * 13.94636 * 0.02562 * 4 2 1 25 25 H 1.08004 * 120.81751 * 0.25756 * 4 3 2 26 26 H 1.07994 * 120.39977 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.46731 * 202.59472 * 10 9 7 28 28 H 1.08999 * 109.47029 * 322.59868 * 10 9 7 29 29 H 0.97008 * 119.99593 * 180.02562 * 14 13 11 30 30 H 1.09003 * 109.46892 * 354.97124 * 19 9 7 31 31 H 1.09004 * 109.47342 * 60.00327 * 20 19 9 32 32 H 1.09006 * 109.47299 * 180.02562 * 20 19 9 33 33 H 1.09000 * 109.47550 * 299.99936 * 20 19 9 34 34 H 1.09004 * 109.47244 * 60.00064 * 21 19 9 35 35 H 1.09003 * 109.47580 * 179.97438 * 21 19 9 36 36 H 1.09003 * 109.47505 * 300.00055 * 21 19 9 37 37 H 1.08005 * 119.64610 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3151 1.2070 -0.0391 5 6 4.6964 1.1573 -0.0369 6 6 5.3327 -0.0834 0.0033 7 6 6.8113 -0.1461 0.0065 8 8 7.4628 0.8676 -0.1517 9 7 7.4354 -1.3272 0.1849 10 6 6.6512 -2.5582 0.3119 11 6 6.2854 -3.0644 -1.0596 12 1 6.6047 -2.5231 -1.9379 13 6 5.5430 -4.2186 -1.1931 14 7 5.1538 -4.8774 -0.1235 15 14 5.0890 -4.8457 -2.8931 16 1 5.6432 -3.9303 -3.9227 17 1 5.6529 -6.2059 -3.0858 18 1 3.6107 -4.8998 -3.0222 19 6 8.8979 -1.3802 0.2520 20 6 9.3283 -1.8345 1.6481 21 6 9.4206 -2.3707 -0.7903 22 7 4.6289 -1.2093 0.0387 23 6 3.3159 -1.2045 0.0380 24 1 -1.0500 -0.0011 0.0005 25 1 2.7956 2.1536 -0.0656 26 1 5.2761 2.0680 -0.0668 27 1 7.2411 -3.3127 0.8322 28 1 5.7425 -2.3533 0.8780 29 1 4.6318 -5.6896 -0.2175 30 1 9.3069 -0.3903 0.0499 31 1 8.9192 -2.8244 1.8503 32 1 10.4165 -1.8735 1.6982 33 1 8.9559 -1.1289 2.3908 34 1 9.1140 -2.0470 -1.7850 35 1 10.5088 -2.4098 -0.7408 36 1 9.0116 -3.3606 -0.5882 37 1 2.7783 -2.1407 0.0671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728864701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:56 Heat of formation + Delta-G solvation = 56.043900 kcal Electronic energy + Delta-G solvation = -20895.837503 eV Core-core repulsion = 17832.991026 eV Total energy + Delta-G solvation = -3062.846477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.70159 -40.07628 -37.48051 -35.42585 -34.64620 -33.28444 -32.83831 -31.26146 -29.04254 -27.97000 -26.15454 -24.87567 -24.48585 -22.70648 -20.21329 -19.99867 -18.67451 -18.23136 -17.84814 -16.79087 -16.53158 -16.35802 -16.16487 -15.62058 -14.94454 -14.81631 -14.61026 -14.40044 -14.14003 -13.85517 -13.54747 -13.24145 -13.07223 -12.91348 -12.72696 -12.62949 -12.44553 -12.25811 -12.12583 -11.67346 -11.57780 -11.44193 -11.09279 -10.78079 -10.45959 -9.83218 -9.68476 -9.31148 -8.00938 -6.03440 -0.58920 0.32252 1.37134 1.41464 1.48935 1.55912 1.75120 2.22521 2.32434 2.50005 3.04292 3.19737 3.33121 3.42509 3.75660 3.86921 4.05635 4.11348 4.27242 4.27936 4.43060 4.72028 4.75107 4.81425 4.83394 4.96473 4.99149 5.03218 5.14740 5.21518 5.32179 5.47582 5.55443 5.65470 5.95708 6.00440 6.33940 6.53988 6.58114 6.89729 7.04522 7.30998 7.58426 9.06668 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.008599 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.203728 B = 3255.367072 C = 4861.944531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.205 4.205 3 C -0.021 4.021 4 C -0.062 4.062 5 C -0.111 4.111 6 C 0.054 3.946 7 C 0.556 3.444 8 O -0.589 6.589 9 N -0.574 5.574 10 C 0.247 3.753 11 C -0.483 4.483 12 H 0.030 0.970 13 C 0.032 3.968 14 N -0.914 5.914 15 Si 0.930 3.070 16 H -0.283 1.283 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.122 3.878 20 C -0.148 4.148 21 C -0.141 4.141 22 N -0.408 5.408 23 C 0.099 3.901 24 H 0.269 0.731 25 H 0.178 0.822 26 H 0.159 0.841 27 H 0.010 0.990 28 H 0.071 0.929 29 H 0.259 0.741 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 8.769 2.256 10.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.206 4.206 3 C -0.023 4.023 4 C -0.087 4.087 5 C -0.132 4.132 6 C -0.083 4.083 7 C 0.344 3.656 8 O -0.472 6.472 9 N -0.302 5.302 10 C 0.127 3.873 11 C -0.523 4.523 12 H 0.048 0.952 13 C -0.167 4.167 14 N -0.556 5.556 15 Si 0.758 3.242 16 H -0.208 1.208 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.019 3.981 20 C -0.205 4.205 21 C -0.199 4.199 22 N -0.118 5.118 23 C -0.061 4.061 24 H 0.285 0.715 25 H 0.195 0.805 26 H 0.177 0.823 27 H 0.028 0.972 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.790 8.287 2.263 9.390 hybrid contribution -0.818 -0.161 -1.090 1.372 sum -4.607 8.126 1.172 9.415 Atomic orbital electron populations 1.25862 0.96304 0.96160 0.95431 1.19946 0.91914 1.04325 1.04369 1.17375 0.89077 0.94767 1.01105 1.21850 0.92570 0.98565 0.95704 1.22129 0.95315 0.98219 0.97521 1.21394 0.94329 0.90673 1.01891 1.18194 0.86909 0.83424 0.77067 1.90626 1.66825 1.35282 1.54498 1.48415 1.07375 1.08111 1.66298 1.19678 0.91139 0.79541 0.96949 1.21211 1.31739 1.07304 0.92000 0.95154 1.25216 0.96125 0.97007 0.98317 1.70007 1.38779 1.17911 1.28863 0.85952 0.77959 0.78089 0.82227 1.20788 1.20677 1.20744 1.21219 0.79470 1.00512 0.96907 1.22045 1.02612 1.01115 0.94771 1.21946 1.01207 0.99194 0.97517 1.68622 1.07814 1.28028 1.07296 1.23246 0.89693 0.97593 0.95604 0.71529 0.80477 0.82296 0.97200 0.91218 0.93129 0.89602 0.93048 0.88886 0.93136 0.94517 0.89418 0.92925 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 19.25 74.32 1.43 -0.86 16 2 C -0.20 -5.42 13.28 30.02 0.40 -5.02 16 3 C -0.02 -0.65 5.75 -21.20 -0.12 -0.77 16 4 C -0.06 -1.71 9.89 22.69 0.22 -1.48 16 5 C -0.11 -3.66 9.61 22.57 0.22 -3.44 16 6 C 0.05 2.27 6.62 41.88 0.28 2.55 16 7 C 0.56 25.10 7.58 86.83 0.66 25.75 16 8 O -0.59 -27.15 15.66 -3.84 -0.06 -27.21 16 9 N -0.57 -25.73 2.38 -805.37 -1.91 -27.64 16 10 C 0.25 12.32 3.90 85.63 0.33 12.66 16 11 C -0.48 -25.87 7.07 25.60 0.18 -25.69 16 12 H 0.03 1.72 7.81 -2.91 -0.02 1.70 16 13 C 0.03 1.73 5.46 84.66 0.46 2.19 16 14 N -0.91 -50.81 13.29 21.45 0.28 -50.53 16 15 Si 0.93 43.70 29.54 68.60 2.03 45.73 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 C 0.12 4.61 3.22 44.99 0.14 4.76 16 20 C -0.15 -4.70 9.26 71.98 0.67 -4.03 16 21 C -0.14 -5.11 8.68 71.98 0.62 -4.48 16 22 N -0.41 -18.06 4.91 -183.93 -0.90 -18.96 16 23 C 0.10 3.82 10.92 85.18 0.93 4.75 16 24 H 0.27 2.16 7.80 -4.42 -0.03 2.12 16 25 H 0.18 3.39 8.06 -2.91 -0.02 3.36 16 26 H 0.16 4.70 7.64 -2.91 -0.02 4.67 16 27 H 0.01 0.53 6.47 -2.39 -0.02 0.51 16 28 H 0.07 3.70 5.28 -2.81 -0.01 3.69 16 29 H 0.26 13.79 8.31 -92.70 -0.77 13.02 16 30 H 0.09 3.27 6.91 -2.39 -0.02 3.25 16 31 H 0.05 1.77 6.92 -2.38 -0.02 1.75 16 32 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.05 2.13 7.10 -2.39 -0.02 2.11 16 37 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 Total: -1.00 -66.07 320.49 6.93 -59.15 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.07 Total: 12.59 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.43 Total: 6.87 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -2.53 Total: -97.13 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.06 Total: -27.21 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.07 6.93 -59.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728864701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.191 kcal (2) G-P(sol) polarization free energy of solvation -66.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds