Wall clock time and date at job start Mon Mar 30 2020 00:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33019 * 119.99811 * 2 1 4 4 C 1.47057 * 120.00064 * 352.35478 * 3 2 1 5 5 O 1.21610 * 120.00089 * 0.61128 * 4 3 2 6 6 N 1.34783 * 119.99745 * 180.89225 * 4 3 2 7 7 C 1.39366 * 119.99591 * 174.00258 * 6 4 3 8 8 C 1.38626 * 119.57788 * 185.32040 * 7 6 4 9 9 C 1.40806 * 118.79113 * 179.74537 * 8 7 6 10 10 C 1.41540 * 120.99912 * 180.27834 * 9 8 7 11 11 H 1.07994 * 120.00566 * 207.57878 * 10 9 8 12 12 C 1.40034 * 119.99924 * 27.56753 * 10 9 8 13 13 N 1.30749 * 120.00005 * 9.43357 * 12 10 9 14 14 Si 1.86802 * 120.00399 * 189.42819 * 12 10 9 15 15 H 1.48492 * 109.47123 * 94.99898 * 14 12 10 16 16 H 1.48497 * 109.47073 * 215.00215 * 14 12 10 17 17 H 1.48502 * 109.46541 * 335.00160 * 14 12 10 18 18 C 1.41179 * 118.00705 * 0.51086 * 9 8 7 19 19 C 1.37590 * 119.02325 * 359.74438 * 18 9 8 20 20 N 1.32084 * 121.10661 * 359.97438 * 19 18 9 21 21 C 1.50693 * 120.00035 * 179.97438 * 2 1 3 22 22 C 1.53002 * 117.49997 * 8.75176 * 21 2 1 23 23 C 1.53003 * 117.50449 * 300.09070 * 21 2 1 24 24 H 1.09002 * 109.47012 * 84.03218 * 1 2 3 25 25 H 1.09002 * 109.47136 * 204.02566 * 1 2 3 26 26 H 1.09001 * 109.47267 * 324.02916 * 1 2 3 27 27 H 1.08005 * 119.99916 * 172.35090 * 3 2 1 28 28 H 0.97001 * 120.00142 * 354.00121 * 6 4 3 29 29 H 1.07995 * 120.60790 * 359.97438 * 8 7 6 30 30 H 0.96998 * 120.00362 * 179.97438 * 13 12 10 31 31 H 1.08000 * 120.48790 * 179.76099 * 18 9 8 32 32 H 1.07993 * 119.44605 * 180.02562 * 19 18 9 33 33 H 1.09000 * 115.55129 * 154.41723 * 21 2 1 34 34 H 1.09004 * 117.50053 * 359.97438 * 22 21 2 35 35 H 1.09005 * 117.50168 * 145.01882 * 22 21 2 36 36 H 1.08996 * 117.49965 * 214.98152 * 23 21 2 37 37 H 1.09003 * 117.49114 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 1.4466 2.4199 -0.1694 5 8 0.2373 2.4160 -0.2984 6 7 2.1225 3.5858 -0.1874 7 6 1.4534 4.7747 -0.4723 8 6 2.1740 5.9523 -0.5979 9 6 1.4818 7.1429 -0.8912 10 6 2.1716 8.3705 -1.0354 11 1 1.6689 9.3012 -0.8177 12 6 3.5059 8.3782 -1.4601 13 7 4.0586 7.2776 -1.8991 14 14 4.4963 9.9608 -1.3996 15 1 5.2698 10.0126 -0.1330 16 1 5.4311 10.0042 -2.5526 17 1 3.5752 11.1238 -1.4650 18 6 0.0787 7.0765 -1.0324 19 6 -0.5503 5.8617 -0.8844 20 7 0.1363 4.7661 -0.6147 21 6 2.2605 -1.3050 0.0006 22 6 1.4521 -2.5876 -0.2053 23 6 2.0245 -2.2566 1.1752 24 1 -0.3633 0.1068 -1.0221 25 1 -0.3633 -0.9386 0.4184 26 1 -0.3634 0.8317 0.6036 27 1 3.2449 1.1562 0.1245 28 1 3.0746 3.5975 -0.0021 29 1 3.2471 5.9559 -0.4766 30 1 4.9828 7.2829 -2.1936 31 1 -0.4925 7.9660 -1.2535 32 1 -1.6233 5.8030 -0.9913 33 1 3.2637 -1.2689 -0.4241 34 1 0.3752 -2.4875 -0.3408 35 1 1.9236 -3.3954 -0.7651 36 1 2.8724 -2.8467 1.5231 37 1 1.3245 -1.9384 1.9478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763911138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:39 Heat of formation + Delta-G solvation = 25.636689 kcal Electronic energy + Delta-G solvation = -19715.185910 eV Core-core repulsion = 16651.020878 eV Total energy + Delta-G solvation = -3064.165032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30040 -39.84453 -38.67427 -36.15639 -35.48524 -34.04480 -32.44372 -30.70794 -28.59163 -27.89239 -25.37678 -23.84480 -23.22830 -23.02480 -21.35540 -19.70731 -19.31612 -18.05635 -17.66992 -16.97228 -16.61441 -16.15670 -16.06594 -15.85439 -15.41665 -14.94385 -14.49871 -14.42825 -14.30814 -13.89107 -13.78345 -13.15913 -12.89043 -12.86082 -12.70119 -12.44104 -12.20681 -12.05910 -11.87794 -11.83085 -11.46234 -11.30984 -11.17068 -10.66415 -9.93212 -9.86178 -9.55691 -8.83031 -8.58567 -6.58517 0.26566 0.92086 1.00160 1.41063 1.54301 1.57463 2.20252 2.21860 2.38087 2.84670 3.03110 3.52371 3.74364 3.88008 3.96497 4.02708 4.14287 4.25366 4.35633 4.65933 4.74770 4.77363 4.83299 4.85563 4.91324 5.01241 5.06741 5.15456 5.16845 5.23579 5.27768 5.47444 5.51994 5.57906 5.68686 5.93060 6.16930 6.50175 6.63362 6.79481 6.83966 7.36433 7.83836 8.30024 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031623 B = 0.003714 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.214690 B = 7536.294452 C = 8290.879682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.006 3.994 3 C -0.236 4.236 4 C 0.521 3.479 5 O -0.520 6.520 6 N -0.651 5.651 7 C 0.332 3.668 8 C -0.256 4.256 9 C 0.113 3.887 10 C -0.485 4.485 11 H 0.083 0.917 12 C 0.036 3.964 13 N -0.820 5.820 14 Si 0.992 3.008 15 H -0.260 1.260 16 H -0.268 1.268 17 H -0.259 1.259 18 C -0.297 4.297 19 C 0.111 3.889 20 N -0.575 5.575 21 C -0.146 4.146 22 C -0.167 4.167 23 C -0.157 4.157 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.421 0.579 29 H 0.126 0.874 30 H 0.291 0.709 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -14.305 3.780 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.005 3.995 3 C -0.256 4.256 4 C 0.313 3.687 5 O -0.396 6.396 6 N -0.298 5.298 7 C 0.106 3.894 8 C -0.282 4.282 9 C 0.105 3.895 10 C -0.516 4.516 11 H 0.101 0.899 12 C -0.180 4.180 13 N -0.446 5.446 14 Si 0.812 3.188 15 H -0.185 1.185 16 H -0.192 1.192 17 H -0.183 1.183 18 C -0.320 4.320 19 C -0.043 4.043 20 N -0.294 5.294 21 C -0.164 4.164 22 C -0.204 4.204 23 C -0.194 4.194 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.171 0.829 28 H 0.259 0.741 29 H 0.144 0.856 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.168 0.832 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.137 -15.297 3.680 15.878 hybrid contribution 1.233 1.827 -0.237 2.217 sum 3.370 -13.470 3.442 14.306 Atomic orbital electron populations 1.21130 0.91737 1.02566 1.02642 1.22017 0.95808 0.93391 0.88324 1.22299 1.01390 0.90015 1.11938 1.19388 0.87573 0.84706 0.77070 1.90789 1.14937 1.86990 1.46876 1.43406 1.12761 1.04593 1.69010 1.18488 0.89390 0.85856 0.95652 1.21625 1.00628 0.91886 1.14023 1.18029 0.91705 0.93674 0.86085 1.19871 0.97111 0.93475 1.41182 0.89857 1.26842 0.98266 1.01704 0.91230 1.69796 1.14776 1.30430 1.29620 0.85042 0.77721 0.77017 0.79029 1.18472 1.19211 1.18266 1.22129 0.95749 0.98637 1.15523 1.22239 0.99176 0.87717 0.95146 1.67367 1.06684 1.31259 1.24135 1.21317 1.00715 0.87572 1.06796 1.23193 1.00394 0.96956 0.99862 1.23094 1.04122 1.00854 0.91319 0.91681 0.90229 0.91401 0.82893 0.74150 0.85604 0.89836 0.86551 0.83222 0.85262 0.88304 0.86505 0.86302 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 7.95 71.24 0.57 -2.88 16 2 C 0.01 0.16 5.81 -17.61 -0.10 0.06 16 3 C -0.24 -6.72 9.67 23.42 0.23 -6.50 16 4 C 0.52 20.73 7.64 86.56 0.66 21.39 16 5 O -0.52 -24.32 11.41 -4.06 -0.05 -24.37 16 6 N -0.65 -27.05 5.38 -311.97 -1.68 -28.73 16 7 C 0.33 16.92 7.41 132.79 0.98 17.91 16 8 C -0.26 -13.59 8.59 22.99 0.20 -13.40 16 9 C 0.11 6.20 5.59 -21.11 -0.12 6.08 16 10 C -0.49 -25.59 9.13 23.52 0.21 -25.37 16 11 H 0.08 4.20 7.86 -2.91 -0.02 4.17 16 12 C 0.04 1.72 5.31 85.29 0.45 2.17 16 13 N -0.82 -41.02 10.77 21.84 0.24 -40.78 16 14 Si 0.99 36.54 29.57 68.60 2.03 38.57 16 15 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 16 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 17 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 18 C -0.30 -15.08 9.90 22.84 0.23 -14.85 16 19 C 0.11 5.51 11.15 84.50 0.94 6.45 16 20 N -0.57 -30.48 7.85 -193.59 -1.52 -32.00 16 21 C -0.15 -2.53 6.00 -11.54 -0.07 -2.60 16 22 C -0.17 -2.30 9.77 30.62 0.30 -2.00 16 23 C -0.16 -2.12 10.11 30.62 0.31 -1.81 16 24 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 25 H 0.08 1.68 6.28 -2.39 -0.01 1.67 16 26 H 0.07 2.34 5.99 -2.39 -0.01 2.33 16 27 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.42 14.40 8.68 -92.71 -0.80 13.59 16 29 H 0.13 6.65 6.20 -2.91 -0.02 6.63 16 30 H 0.29 13.00 8.29 -92.71 -0.77 12.23 16 31 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 32 H 0.15 6.37 8.06 -2.91 -0.02 6.34 16 33 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.10 1.43 6.41 -2.38 -0.02 1.42 16 35 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -68.05 314.87 4.10 -63.95 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: 0.29 Total: 38.70 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.79 Total: -15.35 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -2.96 Total: -101.50 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -68.05 4.10 -63.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763911138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.584 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds