Wall clock time and date at job start Mon Mar 30 2020 00:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33023 * 120.00224 * 2 1 4 4 C 1.47057 * 120.00192 * 172.48220 * 3 2 1 5 5 O 1.21616 * 119.99884 * 3.24342 * 4 3 2 6 6 N 1.34778 * 120.00059 * 183.24491 * 4 3 2 7 7 C 1.39360 * 119.99979 * 176.31465 * 6 4 3 8 8 C 1.38636 * 119.58238 * 185.49192 * 7 6 4 9 9 C 1.40804 * 118.79142 * 179.77589 * 8 7 6 10 10 C 1.41541 * 120.99216 * 180.23613 * 9 8 7 11 11 H 1.08003 * 119.99750 * 209.07615 * 10 9 8 12 12 C 1.40030 * 120.00156 * 29.07185 * 10 9 8 13 13 N 1.30744 * 119.99802 * 8.77203 * 12 10 9 14 14 Si 1.86802 * 120.00134 * 188.76105 * 12 10 9 15 15 H 1.48506 * 109.46573 * 60.00511 * 14 12 10 16 16 H 1.48495 * 109.47094 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47134 * 300.00820 * 14 12 10 18 18 C 1.41185 * 118.00939 * 0.48509 * 9 8 7 19 19 C 1.37584 * 119.01879 * 359.74862 * 18 9 8 20 20 N 1.32077 * 121.11500 * 0.02562 * 19 18 9 21 21 C 1.50703 * 119.99856 * 180.02562 * 2 1 3 22 22 C 1.52995 * 117.49822 * 354.79561 * 21 2 1 23 23 C 1.52994 * 117.49855 * 286.17057 * 21 2 1 24 24 H 1.08995 * 109.47196 * 270.00173 * 1 2 3 25 25 H 1.09004 * 109.47032 * 29.99450 * 1 2 3 26 26 H 1.08999 * 109.47012 * 149.99894 * 1 2 3 27 27 H 1.08004 * 119.99899 * 352.48022 * 3 2 1 28 28 H 0.97004 * 119.99920 * 356.31146 * 6 4 3 29 29 H 1.07996 * 120.60278 * 0.02562 * 8 7 6 30 30 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 31 31 H 1.07997 * 120.48838 * 179.77508 * 18 9 8 32 32 H 1.08001 * 119.44059 * 180.02562 * 19 18 9 33 33 H 1.09006 * 115.54967 * 140.50525 * 21 2 1 34 34 H 1.08999 * 117.50195 * 359.97438 * 22 21 2 35 35 H 1.09001 * 117.49892 * 145.02859 * 22 21 2 36 36 H 1.08998 * 117.50349 * 214.98396 * 23 21 2 37 37 H 1.09007 * 117.50060 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6332 1.1574 0.1666 5 8 4.2402 0.1065 0.2452 6 7 4.2996 2.3271 0.2322 7 6 5.6733 2.3342 0.4670 8 6 6.3307 3.5415 0.6466 9 6 7.7180 3.5290 0.8875 10 6 8.4347 4.7338 1.0824 11 1 9.4769 4.7930 0.8052 12 6 7.7927 5.8490 1.6347 13 7 6.5873 5.7318 2.1275 14 14 8.6583 7.5040 1.6675 15 1 8.9759 7.9240 0.2789 16 1 7.7721 8.5137 2.3001 17 1 9.9153 7.3897 2.4498 18 6 8.3734 2.2790 0.9233 19 6 7.6369 1.1333 0.7286 20 7 6.3355 1.1875 0.5100 21 6 2.2605 -1.3051 -0.0006 22 6 1.4432 -2.5927 0.1219 23 6 2.2863 -2.1065 1.3025 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6391 2.0833 -0.1224 28 1 3.8231 3.1640 0.1160 29 1 5.7880 4.4743 0.6067 30 1 6.1427 6.5042 2.5104 31 1 9.4371 2.2230 1.1014 32 1 8.1313 0.1735 0.7551 33 1 3.1528 -1.3326 -0.6261 34 1 0.3606 -2.4959 0.2034 35 1 1.7977 -3.4676 -0.4230 36 1 3.1954 -2.6614 1.5341 37 1 1.7587 -1.6895 2.1604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763911141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:42 Heat of formation + Delta-G solvation = 42.523798 kcal Electronic energy + Delta-G solvation = -19930.557016 eV Core-core repulsion = 16867.124263 eV Total energy + Delta-G solvation = -3063.432752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68749 -38.28676 -37.10156 -34.25304 -33.63271 -33.24796 -30.51661 -29.02631 -27.57847 -25.96191 -23.59975 -22.24326 -21.92664 -21.56993 -19.90084 -18.42882 -17.56706 -16.84531 -15.80629 -15.40142 -15.06157 -14.58742 -14.33164 -14.18023 -13.86521 -13.45058 -13.29636 -12.88453 -12.63299 -12.56529 -12.25354 -12.23637 -11.48252 -11.41100 -11.19926 -11.16674 -10.89433 -10.63114 -10.30649 -10.22028 -10.09878 -9.65769 -9.34909 -9.05979 -8.76668 -7.92320 -7.68032 -6.97525 -6.73023 -4.60866 1.51827 2.74640 2.82978 3.02184 3.05198 3.26130 3.78153 3.86916 3.89924 4.10313 4.63595 4.72956 4.88869 5.11360 5.16424 5.20678 5.43782 5.47189 5.60745 5.65695 5.69369 5.79584 5.97179 6.02384 6.22380 6.40243 6.44627 6.57636 6.68521 6.73838 6.84008 6.99160 7.14081 7.40917 7.50371 7.83256 8.00032 8.26825 8.45944 8.73211 8.77873 8.99431 9.70946 10.13876 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032439 B = 0.004006 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.964604 B = 6987.225340 C = 7659.642005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.018 4.018 3 C -0.216 4.216 4 C 0.527 3.473 5 O -0.477 6.477 6 N -0.656 5.656 7 C 0.337 3.663 8 C -0.237 4.237 9 C 0.144 3.856 10 C -0.459 4.459 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.798 5.798 14 Si 0.915 3.085 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.282 4.282 19 C 0.116 3.884 20 N -0.549 5.549 21 C -0.110 4.110 22 C -0.194 4.194 23 C -0.153 4.153 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.407 0.593 29 H 0.129 0.871 30 H 0.281 0.719 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.239 -5.303 -2.780 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.020 4.020 3 C -0.237 4.237 4 C 0.315 3.685 5 O -0.349 6.349 6 N -0.301 5.301 7 C 0.112 3.888 8 C -0.262 4.262 9 C 0.136 3.864 10 C -0.491 4.491 11 H 0.099 0.901 12 C -0.142 4.142 13 N -0.424 5.424 14 Si 0.739 3.261 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.190 1.190 18 C -0.305 4.305 19 C -0.039 4.039 20 N -0.268 5.268 21 C -0.128 4.128 22 C -0.231 4.231 23 C -0.190 4.190 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.142 0.858 28 H 0.241 0.759 29 H 0.147 0.853 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.522 -6.742 -2.727 13.625 hybrid contribution 0.589 2.254 0.294 2.349 sum -10.933 -4.487 -2.432 12.066 Atomic orbital electron populations 1.20977 0.91389 1.03108 1.02613 1.21734 0.94935 0.93437 0.91915 1.22500 0.93999 0.98395 1.08813 1.18587 0.87384 0.84186 0.78313 1.90814 1.68976 1.29980 1.45176 1.43367 1.06888 1.09144 1.70677 1.18218 0.83013 0.90855 0.96741 1.21622 0.96483 0.95585 1.12554 1.17573 0.91120 0.92228 0.85491 1.19525 0.97995 0.94719 1.36862 0.90147 1.25923 0.94692 1.00821 0.92743 1.69741 1.12728 1.32014 1.27961 0.86264 0.79944 0.80315 0.79574 1.18818 1.20299 1.18952 1.21951 0.99826 0.93590 1.15172 1.21771 0.89157 0.96760 0.96190 1.67242 1.09149 1.26882 1.23525 1.21401 1.00546 0.88042 1.02762 1.23135 0.98041 0.98402 1.03526 1.22762 1.01785 1.02844 0.91644 0.90619 0.91158 0.90962 0.85805 0.75856 0.85331 0.90810 0.87999 0.85938 0.84771 0.88962 0.88916 0.88561 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.41 36.00 0.34 -0.79 16 2 C -0.02 -0.24 5.80 -101.16 -0.59 -0.83 16 3 C -0.22 -3.12 9.63 -37.82 -0.36 -3.48 16 4 C 0.53 10.25 7.69 -12.68 -0.10 10.15 16 5 O -0.48 -10.72 11.53 5.26 0.06 -10.66 16 6 N -0.66 -13.26 5.38 -12.58 -0.07 -13.33 16 7 C 0.34 8.30 7.41 -154.78 -1.15 7.16 16 8 C -0.24 -6.09 8.58 -38.47 -0.33 -6.42 16 9 C 0.14 3.84 5.57 -106.55 -0.59 3.24 16 10 C -0.46 -11.94 9.13 -37.65 -0.34 -12.28 16 11 H 0.08 1.99 7.86 -52.48 -0.41 1.58 16 12 C 0.08 1.85 5.31 -17.34 -0.09 1.76 16 13 N -0.80 -19.96 10.83 55.55 0.60 -19.36 16 14 Si 0.91 18.16 29.57 -169.99 -5.03 13.14 16 15 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 16 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 18 C -0.28 -7.00 9.90 -38.70 -0.38 -7.38 16 19 C 0.12 2.81 11.15 -17.68 -0.20 2.61 16 20 N -0.55 -14.13 7.85 -12.54 -0.10 -14.22 16 21 C -0.11 -1.56 4.19 -91.78 -0.38 -1.95 16 22 C -0.19 -2.16 9.76 -26.73 -0.26 -2.42 16 23 C -0.15 -2.05 10.23 -26.73 -0.27 -2.32 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 26 H 0.07 0.58 6.54 -51.93 -0.34 0.24 16 27 H 0.12 1.41 8.04 -52.48 -0.42 0.99 16 28 H 0.41 6.81 8.68 -40.82 -0.35 6.46 16 29 H 0.13 3.28 6.29 -52.49 -0.33 2.95 16 30 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 31 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 33 H 0.13 2.31 6.44 -51.93 -0.33 1.97 16 34 H 0.09 0.86 6.42 -51.93 -0.33 0.52 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -30.77 315.55 -9.11 -39.88 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.62 Total: 12.76 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -4.72 Total: -12.95 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.44 Total: -46.92 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.77 -9.11 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763911141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.402 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds