Wall clock time and date at job start Mon Mar 30 2020 00:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33023 * 120.00224 * 2 1 4 4 C 1.47057 * 120.00192 * 172.48220 * 3 2 1 5 5 O 1.21616 * 119.99884 * 3.24342 * 4 3 2 6 6 N 1.34778 * 120.00059 * 183.24491 * 4 3 2 7 7 C 1.39360 * 119.99979 * 176.31465 * 6 4 3 8 8 C 1.38636 * 119.58238 * 185.49192 * 7 6 4 9 9 C 1.40804 * 118.79142 * 179.77589 * 8 7 6 10 10 C 1.41541 * 120.99216 * 180.23613 * 9 8 7 11 11 H 1.08003 * 119.99750 * 209.07615 * 10 9 8 12 12 C 1.40030 * 120.00156 * 29.07185 * 10 9 8 13 13 N 1.30744 * 119.99802 * 8.77203 * 12 10 9 14 14 Si 1.86802 * 120.00134 * 188.76105 * 12 10 9 15 15 H 1.48506 * 109.46573 * 60.00511 * 14 12 10 16 16 H 1.48495 * 109.47094 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47134 * 300.00820 * 14 12 10 18 18 C 1.41185 * 118.00939 * 0.48509 * 9 8 7 19 19 C 1.37584 * 119.01879 * 359.74862 * 18 9 8 20 20 N 1.32077 * 121.11500 * 0.02562 * 19 18 9 21 21 C 1.50703 * 119.99856 * 180.02562 * 2 1 3 22 22 C 1.52995 * 117.49822 * 354.79561 * 21 2 1 23 23 C 1.52994 * 117.49855 * 286.17057 * 21 2 1 24 24 H 1.08995 * 109.47196 * 270.00173 * 1 2 3 25 25 H 1.09004 * 109.47032 * 29.99450 * 1 2 3 26 26 H 1.08999 * 109.47012 * 149.99894 * 1 2 3 27 27 H 1.08004 * 119.99899 * 352.48022 * 3 2 1 28 28 H 0.97004 * 119.99920 * 356.31146 * 6 4 3 29 29 H 1.07996 * 120.60278 * 0.02562 * 8 7 6 30 30 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 31 31 H 1.07997 * 120.48838 * 179.77508 * 18 9 8 32 32 H 1.08001 * 119.44059 * 180.02562 * 19 18 9 33 33 H 1.09006 * 115.54967 * 140.50525 * 21 2 1 34 34 H 1.08999 * 117.50195 * 359.97438 * 22 21 2 35 35 H 1.09001 * 117.49892 * 145.02859 * 22 21 2 36 36 H 1.08998 * 117.50349 * 214.98396 * 23 21 2 37 37 H 1.09007 * 117.50060 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6332 1.1574 0.1666 5 8 4.2402 0.1065 0.2452 6 7 4.2996 2.3271 0.2322 7 6 5.6733 2.3342 0.4670 8 6 6.3307 3.5415 0.6466 9 6 7.7180 3.5290 0.8875 10 6 8.4347 4.7338 1.0824 11 1 9.4769 4.7930 0.8052 12 6 7.7927 5.8490 1.6347 13 7 6.5873 5.7318 2.1275 14 14 8.6583 7.5040 1.6675 15 1 8.9759 7.9240 0.2789 16 1 7.7721 8.5137 2.3001 17 1 9.9153 7.3897 2.4498 18 6 8.3734 2.2790 0.9233 19 6 7.6369 1.1333 0.7286 20 7 6.3355 1.1875 0.5100 21 6 2.2605 -1.3051 -0.0006 22 6 1.4432 -2.5927 0.1219 23 6 2.2863 -2.1065 1.3025 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6391 2.0833 -0.1224 28 1 3.8231 3.1640 0.1160 29 1 5.7880 4.4743 0.6067 30 1 6.1427 6.5042 2.5104 31 1 9.4371 2.2230 1.1014 32 1 8.1313 0.1735 0.7551 33 1 3.1528 -1.3326 -0.6261 34 1 0.3606 -2.4959 0.2034 35 1 1.7977 -3.4676 -0.4230 36 1 3.1954 -2.6614 1.5341 37 1 1.7587 -1.6895 2.1604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763911141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:41 Heat of formation + Delta-G solvation = 25.398788 kcal Electronic energy + Delta-G solvation = -19931.299612 eV Core-core repulsion = 16867.124263 eV Total energy + Delta-G solvation = -3064.175348 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27042 -39.85944 -38.43621 -36.06957 -35.39294 -34.29490 -32.45263 -30.68832 -28.70271 -27.90073 -24.85118 -23.82376 -23.32577 -22.99777 -21.53219 -19.75852 -19.35438 -18.17445 -17.50097 -17.00733 -16.38497 -16.08245 -16.03483 -15.83843 -15.47269 -14.81675 -14.49946 -14.31353 -14.13990 -13.96226 -13.75977 -13.19827 -13.13909 -12.86937 -12.68505 -12.48051 -12.14965 -12.04679 -11.92193 -11.69980 -11.39665 -11.30022 -11.14896 -10.57271 -9.92623 -9.84918 -9.53331 -8.82465 -8.58537 -6.58715 0.30658 0.92658 1.01167 1.40779 1.52479 1.58034 2.20620 2.26844 2.42399 2.85518 3.05632 3.62263 3.73606 3.77637 4.05690 4.11495 4.23663 4.32089 4.44957 4.69129 4.73147 4.74112 4.85796 4.87263 4.90901 4.97451 5.08536 5.11127 5.22933 5.25747 5.31112 5.44884 5.47290 5.65443 5.68673 5.92927 6.17704 6.50709 6.64840 6.79293 6.84030 7.40599 7.84399 8.30896 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032439 B = 0.004006 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.964604 B = 6987.225340 C = 7659.642005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.004 3.996 3 C -0.238 4.238 4 C 0.518 3.482 5 O -0.516 6.516 6 N -0.653 5.653 7 C 0.334 3.666 8 C -0.255 4.255 9 C 0.115 3.885 10 C -0.490 4.490 11 H 0.083 0.917 12 C 0.037 3.963 13 N -0.822 5.822 14 Si 0.991 3.009 15 H -0.259 1.259 16 H -0.266 1.266 17 H -0.261 1.261 18 C -0.296 4.296 19 C 0.110 3.890 20 N -0.572 5.572 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.167 4.167 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.158 0.842 28 H 0.420 0.580 29 H 0.124 0.876 30 H 0.291 0.709 31 H 0.116 0.884 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.366 -4.747 -2.793 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.002 3.998 3 C -0.259 4.259 4 C 0.309 3.691 5 O -0.391 6.391 6 N -0.299 5.299 7 C 0.107 3.893 8 C -0.281 4.281 9 C 0.107 3.893 10 C -0.521 4.521 11 H 0.102 0.898 12 C -0.179 4.179 13 N -0.448 5.448 14 Si 0.811 3.189 15 H -0.183 1.183 16 H -0.190 1.190 17 H -0.185 1.185 18 C -0.320 4.320 19 C -0.044 4.044 20 N -0.292 5.292 21 C -0.158 4.158 22 C -0.194 4.194 23 C -0.204 4.204 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.176 0.824 28 H 0.258 0.742 29 H 0.142 0.858 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.167 0.833 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.684 -6.189 -2.747 15.268 hybrid contribution 1.212 1.952 0.304 2.318 sum -12.472 -4.238 -2.443 13.397 Atomic orbital electron populations 1.21091 0.87625 1.04963 1.04092 1.22181 0.97263 0.92055 0.88280 1.22456 0.90723 1.00687 1.12011 1.19507 0.89460 0.83128 0.76999 1.90800 1.70337 1.31076 1.46890 1.43449 1.05374 1.10566 1.70529 1.18491 0.84837 0.90326 0.95605 1.21601 0.96570 0.95766 1.14163 1.18011 0.91967 0.93303 0.86001 1.19838 0.98487 0.95672 1.38082 0.89848 1.26821 0.95328 1.04199 0.91565 1.69793 1.13906 1.33557 1.27586 0.85118 0.78774 0.75237 0.79761 1.18289 1.19023 1.18542 1.22137 1.00633 0.93391 1.15825 1.22232 0.89063 0.97853 0.95229 1.67377 1.09836 1.27430 1.24591 1.21324 1.00888 0.90531 1.03068 1.23244 0.99156 0.96466 1.00529 1.22779 1.02173 1.03242 0.92204 0.88972 0.89229 0.89261 0.82446 0.74222 0.85795 0.89855 0.86580 0.83333 0.88579 0.85901 0.88124 0.90297 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.41 71.24 0.67 -1.01 16 2 C 0.00 0.10 5.80 -17.61 -0.10 -0.01 16 3 C -0.24 -6.60 9.63 23.42 0.23 -6.38 16 4 C 0.52 20.57 7.69 86.56 0.67 21.23 16 5 O -0.52 -24.17 11.53 -4.08 -0.05 -24.22 16 6 N -0.65 -27.08 5.38 -311.97 -1.68 -28.76 16 7 C 0.33 17.03 7.41 132.79 0.98 18.01 16 8 C -0.26 -13.61 8.58 22.99 0.20 -13.41 16 9 C 0.12 6.34 5.57 -21.11 -0.12 6.22 16 10 C -0.49 -25.95 9.13 23.52 0.21 -25.73 16 11 H 0.08 4.21 7.86 -2.91 -0.02 4.18 16 12 C 0.04 1.79 5.31 85.29 0.45 2.24 16 13 N -0.82 -41.38 10.83 21.84 0.24 -41.14 16 14 Si 0.99 36.67 29.57 68.60 2.03 38.70 16 15 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 16 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 17 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 18 C -0.30 -15.14 9.90 22.84 0.23 -14.91 16 19 C 0.11 5.50 11.15 84.50 0.94 6.44 16 20 N -0.57 -30.47 7.85 -193.59 -1.52 -31.99 16 21 C -0.14 -3.92 4.19 -11.54 -0.05 -3.97 16 22 C -0.16 -3.11 9.76 30.59 0.30 -2.81 16 23 C -0.17 -4.36 10.23 30.59 0.31 -4.05 16 24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 0.97 8.06 -2.38 -0.02 0.95 16 26 H 0.09 0.98 6.54 -2.39 -0.02 0.96 16 27 H 0.16 3.19 8.04 -2.91 -0.02 3.17 16 28 H 0.42 14.33 8.68 -92.71 -0.80 13.52 16 29 H 0.12 6.56 6.29 -2.91 -0.02 6.55 16 30 H 0.29 13.13 8.29 -92.71 -0.77 12.36 16 31 H 0.12 5.41 8.06 -2.91 -0.02 5.38 16 32 H 0.15 6.39 8.06 -2.91 -0.02 6.36 16 33 H 0.10 3.47 6.44 -2.38 -0.02 3.46 16 34 H 0.12 1.70 6.42 -2.39 -0.02 1.69 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -69.64 315.55 4.24 -65.41 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: 0.29 Total: 40.13 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.92 Total: -18.13 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -2.96 Total: -101.89 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -69.64 4.24 -65.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763911141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.806 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds