Wall clock time and date at job start Mon Mar 30 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47239 * 2 1 4 4 C 1.50699 * 109.47306 * 239.99742 * 2 1 3 5 5 N 1.28005 * 120.00208 * 119.72938 * 4 2 1 6 6 N 1.40101 * 120.00111 * 175.22577 * 5 4 2 7 7 C 1.46732 * 125.62467 * 4.79438 * 6 5 4 8 8 C 1.50825 * 106.24482 * 179.91365 * 7 6 5 9 9 C 1.37568 * 133.24444 * 180.09072 * 8 7 6 10 10 C 1.38478 * 119.95721 * 180.28621 * 9 8 7 11 11 C 1.38386 * 120.19361 * 359.97438 * 10 9 8 12 12 C 1.37938 * 120.31972 * 0.02562 * 11 10 9 13 13 C 1.39644 * 119.82510 * 359.97438 * 12 11 10 14 14 C 1.34426 * 125.62375 * 185.10687 * 6 5 4 15 15 O 1.21572 * 124.85170 * 359.97438 * 14 6 5 16 16 C 1.53005 * 109.47032 * 119.99689 * 2 1 3 17 17 C 1.50708 * 109.46917 * 295.00158 * 16 2 1 18 18 H 1.07999 * 120.00024 * 359.97438 * 17 16 2 19 19 C 1.37872 * 119.99987 * 180.02562 * 17 16 2 20 20 N 1.31511 * 120.00126 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99965 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47001 * 90.00189 * 21 19 17 23 23 H 1.48502 * 109.47194 * 210.00041 * 21 19 17 24 24 H 1.48500 * 109.47167 * 330.00021 * 21 19 17 25 25 H 1.09000 * 109.46967 * 60.00071 * 1 2 3 26 26 H 1.08999 * 109.47501 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47281 * 300.00817 * 1 2 3 28 28 H 1.08001 * 119.99735 * 300.00038 * 4 2 1 29 29 H 1.09004 * 110.10203 * 299.23483 * 7 6 5 30 30 H 1.09005 * 110.09996 * 60.84496 * 7 6 5 31 31 H 1.08007 * 120.02382 * 0.31083 * 9 8 7 32 32 H 1.08005 * 119.90543 * 179.97438 * 10 9 8 33 33 H 1.07994 * 119.84141 * 179.97438 * 11 10 9 34 34 H 1.08000 * 120.08590 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.47068 * 54.99732 * 16 2 1 36 36 H 1.08991 * 109.47248 * 175.00476 * 16 2 1 37 37 H 0.97003 * 119.99957 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.7640 -0.0869 -2.0756 6 7 3.3135 -0.7727 -3.1668 7 6 3.0525 -2.1741 -3.5149 8 6 3.8590 -2.4574 -4.7575 9 6 4.0200 -3.5760 -5.5419 10 6 4.8542 -3.5319 -6.6463 11 6 5.5268 -2.3650 -6.9643 12 6 5.3725 -1.2377 -6.1845 13 6 4.5330 -1.2743 -5.0692 14 6 4.1713 -0.2571 -4.0642 15 8 4.5892 0.8844 -4.0495 16 6 2.0400 -0.7212 1.2493 17 6 1.6412 0.0572 2.4767 18 1 1.0805 0.9747 2.3756 19 6 1.9930 -0.4014 3.7283 20 7 1.6455 0.2781 4.7993 21 14 2.9634 -1.9880 3.9030 22 1 4.4169 -1.6846 3.8783 23 1 2.6161 -2.6416 5.1904 24 1 2.6288 -2.8992 2.7792 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.7714 -1.7444 -1.4012 29 1 3.3707 -2.8274 -2.7024 30 1 1.9913 -2.3181 -3.7184 31 1 3.4957 -4.4879 -5.2968 32 1 4.9803 -4.4107 -7.2614 33 1 6.1763 -2.3371 -7.8267 34 1 5.8989 -0.3290 -6.4364 35 1 1.6053 -1.7197 1.2953 36 1 3.1262 -0.7994 1.2058 37 1 1.8934 -0.0444 5.6799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766028621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:26 Heat of formation + Delta-G solvation = 40.497100 kcal Electronic energy + Delta-G solvation = -19552.092961 eV Core-core repulsion = 16488.572325 eV Total energy + Delta-G solvation = -3063.520636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27372 -38.39119 -37.28205 -35.79258 -33.71581 -32.08610 -31.47320 -30.00368 -27.64037 -27.13064 -25.02111 -23.40252 -22.08259 -21.48654 -19.95476 -19.06179 -17.61192 -17.06756 -16.79428 -16.35844 -16.27769 -15.05470 -14.72016 -14.31260 -14.10339 -13.67448 -13.55752 -13.54735 -13.37616 -13.10620 -12.71588 -12.26649 -12.23737 -11.76469 -11.46779 -11.24053 -11.09224 -10.86214 -10.20008 -10.13232 -10.04875 -9.84725 -9.73069 -9.41004 -9.25384 -9.20635 -8.58562 -8.52794 -6.08171 -4.06860 0.42193 0.89234 2.01229 2.19748 2.80233 3.27849 3.35592 3.36026 3.55335 3.73678 4.06768 4.40766 4.47321 4.59387 4.79573 4.87096 4.93876 4.96447 5.03209 5.16127 5.25429 5.32862 5.54207 5.74040 5.82183 5.88953 5.93027 5.98271 6.03427 6.28687 6.41146 6.57472 6.69246 6.83131 6.90330 7.10547 7.24747 7.57443 7.70498 8.38453 8.47573 8.96171 9.53087 11.04824 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027465 B = 0.003628 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.240414 B = 7716.772662 C = 8038.966765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.032 4.032 3 H 0.087 0.913 4 C 0.104 3.896 5 N -0.230 5.230 6 N -0.478 5.478 7 C 0.104 3.896 8 C -0.075 4.075 9 C -0.102 4.102 10 C -0.088 4.088 11 C -0.127 4.127 12 C -0.044 4.044 13 C -0.148 4.148 14 C 0.576 3.424 15 O -0.500 6.500 16 C -0.002 4.002 17 C -0.517 4.517 18 H 0.078 0.922 19 C 0.069 3.931 20 N -0.900 5.900 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.021 0.979 36 H 0.014 0.986 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 -11.416 -22.872 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.053 4.053 3 H 0.105 0.895 4 C -0.110 4.110 5 N -0.028 5.028 6 N -0.295 5.295 7 C -0.020 4.020 8 C -0.077 4.077 9 C -0.121 4.121 10 C -0.107 4.107 11 C -0.145 4.145 12 C -0.063 4.063 13 C -0.153 4.153 14 C 0.365 3.635 15 O -0.373 6.373 16 C -0.040 4.040 17 C -0.555 4.555 18 H 0.096 0.904 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.058 -9.882 -22.935 25.301 hybrid contribution 0.215 -1.830 0.336 1.873 sum 4.273 -11.712 -22.599 25.810 Atomic orbital electron populations 1.21697 0.93687 1.01597 1.01850 1.20230 0.96090 1.00285 0.88722 0.89473 1.26878 0.92083 0.98418 0.93592 1.74884 1.11877 1.20977 0.95046 1.49334 1.44937 1.09662 1.25596 1.20876 1.00587 0.85028 0.95550 1.20352 0.97060 0.94468 0.95810 1.20332 0.99710 0.97158 0.94851 1.21343 0.95034 0.98238 0.96048 1.21151 1.00550 0.92631 1.00186 1.20891 0.94794 0.98994 0.91599 1.20325 1.01655 0.95283 0.98037 1.17924 0.78183 0.86919 0.80512 1.90783 1.54235 1.18513 1.73797 1.19608 0.95998 0.96255 0.92164 1.21019 1.36027 1.09748 0.88711 0.90410 1.24980 0.95505 0.96891 0.95886 1.69897 1.46750 1.39157 0.98091 0.86832 0.80809 0.84372 0.77562 1.20306 1.21330 1.19105 0.94248 0.93104 0.90069 0.87499 0.88227 0.88383 0.84919 0.84834 0.84805 0.84736 0.96034 0.96765 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.98 37.16 0.33 -1.84 16 2 C -0.03 -0.60 2.75 -91.77 -0.25 -0.86 16 3 H 0.09 1.78 8.11 -51.93 -0.42 1.36 16 4 C 0.10 1.72 9.34 -13.87 -0.13 1.59 16 5 N -0.23 -4.23 11.48 32.67 0.38 -3.86 16 6 N -0.48 -7.74 4.06 -62.41 -0.25 -8.00 16 7 C 0.10 1.17 6.06 -5.01 -0.03 1.14 16 8 C -0.08 -0.78 6.38 -104.27 -0.66 -1.45 16 9 C -0.10 -0.77 10.03 -39.74 -0.40 -1.16 16 10 C -0.09 -0.57 10.05 -39.44 -0.40 -0.97 16 11 C -0.13 -0.92 10.02 -39.64 -0.40 -1.32 16 12 C -0.04 -0.44 10.10 -39.17 -0.40 -0.84 16 13 C -0.15 -1.90 6.26 -105.06 -0.66 -2.56 16 14 C 0.58 9.88 8.12 -12.64 -0.10 9.77 16 15 O -0.50 -10.42 18.00 5.30 0.10 -10.32 16 16 C 0.00 -0.04 3.50 -27.88 -0.10 -0.14 16 17 C -0.52 -13.96 8.96 -34.44 -0.31 -14.27 16 18 H 0.08 2.24 7.30 -52.49 -0.38 1.86 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 21 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 28 H 0.11 1.42 7.05 -52.49 -0.37 1.05 16 29 H 0.10 0.99 8.11 -51.93 -0.42 0.56 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 32 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -34.01 319.01 -7.32 -41.33 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.85 Total: -3.00 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -3.60 Total: -11.04 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.90 Total: -38.16 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.10 Total: -10.32 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.01 -7.32 -41.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766028621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.824 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds