Wall clock time and date at job start Mon Mar 30 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47239 * 2 1 4 4 C 1.50699 * 109.47306 * 239.99742 * 2 1 3 5 5 N 1.28005 * 120.00208 * 119.72938 * 4 2 1 6 6 N 1.40101 * 120.00111 * 175.22577 * 5 4 2 7 7 C 1.46732 * 125.62467 * 4.79438 * 6 5 4 8 8 C 1.50825 * 106.24482 * 179.91365 * 7 6 5 9 9 C 1.37568 * 133.24444 * 180.09072 * 8 7 6 10 10 C 1.38478 * 119.95721 * 180.28621 * 9 8 7 11 11 C 1.38386 * 120.19361 * 359.97438 * 10 9 8 12 12 C 1.37938 * 120.31972 * 0.02562 * 11 10 9 13 13 C 1.39644 * 119.82510 * 359.97438 * 12 11 10 14 14 C 1.34426 * 125.62375 * 185.10687 * 6 5 4 15 15 O 1.21572 * 124.85170 * 359.97438 * 14 6 5 16 16 C 1.53005 * 109.47032 * 119.99689 * 2 1 3 17 17 C 1.50708 * 109.46917 * 295.00158 * 16 2 1 18 18 H 1.07999 * 120.00024 * 359.97438 * 17 16 2 19 19 C 1.37872 * 119.99987 * 180.02562 * 17 16 2 20 20 N 1.31511 * 120.00126 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99965 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47001 * 90.00189 * 21 19 17 23 23 H 1.48502 * 109.47194 * 210.00041 * 21 19 17 24 24 H 1.48500 * 109.47167 * 330.00021 * 21 19 17 25 25 H 1.09000 * 109.46967 * 60.00071 * 1 2 3 26 26 H 1.08999 * 109.47501 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47281 * 300.00817 * 1 2 3 28 28 H 1.08001 * 119.99735 * 300.00038 * 4 2 1 29 29 H 1.09004 * 110.10203 * 299.23483 * 7 6 5 30 30 H 1.09005 * 110.09996 * 60.84496 * 7 6 5 31 31 H 1.08007 * 120.02382 * 0.31083 * 9 8 7 32 32 H 1.08005 * 119.90543 * 179.97438 * 10 9 8 33 33 H 1.07994 * 119.84141 * 179.97438 * 11 10 9 34 34 H 1.08000 * 120.08590 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.47068 * 54.99732 * 16 2 1 36 36 H 1.08991 * 109.47248 * 175.00476 * 16 2 1 37 37 H 0.97003 * 119.99957 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.7640 -0.0869 -2.0756 6 7 3.3135 -0.7727 -3.1668 7 6 3.0525 -2.1741 -3.5149 8 6 3.8590 -2.4574 -4.7575 9 6 4.0200 -3.5760 -5.5419 10 6 4.8542 -3.5319 -6.6463 11 6 5.5268 -2.3650 -6.9643 12 6 5.3725 -1.2377 -6.1845 13 6 4.5330 -1.2743 -5.0692 14 6 4.1713 -0.2571 -4.0642 15 8 4.5892 0.8844 -4.0495 16 6 2.0400 -0.7212 1.2493 17 6 1.6412 0.0572 2.4767 18 1 1.0805 0.9747 2.3756 19 6 1.9930 -0.4014 3.7283 20 7 1.6455 0.2781 4.7993 21 14 2.9634 -1.9880 3.9030 22 1 4.4169 -1.6846 3.8783 23 1 2.6161 -2.6416 5.1904 24 1 2.6288 -2.8992 2.7792 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.7714 -1.7444 -1.4012 29 1 3.3707 -2.8274 -2.7024 30 1 1.9913 -2.3181 -3.7184 31 1 3.4957 -4.4879 -5.2968 32 1 4.9803 -4.4107 -7.2614 33 1 6.1763 -2.3371 -7.8267 34 1 5.8989 -0.3290 -6.4364 35 1 1.6053 -1.7197 1.2953 36 1 3.1262 -0.7994 1.2058 37 1 1.8934 -0.0444 5.6799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766028621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:26 Heat of formation + Delta-G solvation = 18.119976 kcal Electronic energy + Delta-G solvation = -19553.063306 eV Core-core repulsion = 16488.572325 eV Total energy + Delta-G solvation = -3064.490981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23106 -39.31803 -38.65811 -37.11734 -35.17773 -33.90419 -32.15891 -31.05878 -29.40349 -28.01130 -26.26712 -24.79845 -22.85061 -22.74837 -21.14092 -20.46408 -19.02575 -18.59316 -17.96820 -17.34312 -17.19719 -16.29053 -15.76454 -15.62945 -15.29811 -15.09407 -14.86890 -14.64830 -14.52973 -14.16099 -14.12237 -13.66448 -13.21967 -12.91286 -12.85516 -12.64670 -12.48012 -12.11202 -11.90073 -11.73193 -11.60709 -11.36954 -11.19460 -11.04600 -10.73121 -10.16799 -9.95080 -9.68741 -8.24304 -6.27904 -0.37561 0.28060 0.80439 1.07364 1.39393 1.40408 1.51177 1.78769 2.39375 2.75549 2.95804 3.11297 3.18360 3.57731 3.78305 3.90554 4.13582 4.18282 4.19640 4.33344 4.34755 4.41968 4.45928 4.57247 4.69311 4.86020 4.97160 5.03238 5.14429 5.26185 5.31781 5.32892 5.41117 5.45881 5.57646 5.65699 5.68869 5.85935 6.31327 6.35459 6.79521 7.16958 7.35469 8.92148 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027465 B = 0.003628 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.240414 B = 7716.772662 C = 8038.966765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.029 4.029 3 H 0.056 0.944 4 C 0.118 3.882 5 N -0.276 5.276 6 N -0.483 5.483 7 C 0.099 3.901 8 C -0.075 4.075 9 C -0.096 4.096 10 C -0.072 4.072 11 C -0.122 4.122 12 C -0.058 4.058 13 C -0.186 4.186 14 C 0.558 3.442 15 O -0.563 6.563 16 C 0.003 3.997 17 C -0.520 4.520 18 H 0.039 0.961 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.944 3.056 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.234 1.234 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.149 0.851 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.128 0.872 35 H 0.044 0.956 36 H 0.009 0.991 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -16.330 -25.703 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.051 4.051 3 H 0.075 0.925 4 C -0.095 4.095 5 N -0.074 5.074 6 N -0.300 5.300 7 C -0.024 4.024 8 C -0.076 4.076 9 C -0.114 4.114 10 C -0.089 4.089 11 C -0.139 4.139 12 C -0.077 4.077 13 C -0.190 4.190 14 C 0.350 3.650 15 O -0.442 6.442 16 C -0.036 4.036 17 C -0.558 4.558 18 H 0.058 0.942 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.768 3.232 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.157 1.157 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.166 0.834 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.186 0.814 32 H 0.192 0.808 33 H 0.182 0.818 34 H 0.146 0.854 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.294 -14.838 -25.786 30.059 hybrid contribution 0.128 -0.269 1.105 1.145 sum 4.421 -15.106 -24.681 29.273 Atomic orbital electron populations 1.21612 0.92025 1.03084 1.01405 1.19997 0.97495 0.98596 0.88988 0.92523 1.26644 0.91214 0.99668 0.92003 1.74729 1.12590 1.23654 0.96455 1.49379 1.44296 1.11733 1.24572 1.21196 1.02404 0.82062 0.96713 1.20450 0.96750 0.94554 0.95887 1.20778 0.99425 0.97099 0.94129 1.21899 0.92756 0.98941 0.95340 1.21533 1.00494 0.91719 1.00204 1.21082 0.94724 1.00289 0.91596 1.20149 1.04937 0.95011 0.98946 1.18906 0.77655 0.87114 0.81335 1.90717 1.56701 1.21175 1.75577 1.19508 0.95733 0.96790 0.91541 1.21353 1.34776 1.08850 0.90857 0.94228 1.25953 0.96867 1.00954 0.95472 1.70063 1.48903 1.41589 0.98790 0.85748 0.78660 0.80176 0.78605 1.20445 1.21108 1.15650 0.92308 0.90567 0.92927 0.83416 0.86379 0.85826 0.81444 0.80752 0.81773 0.85422 0.93790 0.97246 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.98 71.98 0.65 -3.37 16 2 C -0.03 -1.11 2.75 -11.54 -0.03 -1.14 16 3 H 0.06 2.44 8.11 -2.39 -0.02 2.42 16 4 C 0.12 3.70 9.34 88.67 0.83 4.52 16 5 N -0.28 -10.18 11.48 -50.47 -0.58 -10.76 16 6 N -0.48 -15.53 4.06 -469.82 -1.91 -17.44 16 7 C 0.10 1.94 6.06 85.63 0.52 2.46 16 8 C -0.07 -1.34 6.38 -19.63 -0.13 -1.46 16 9 C -0.10 -0.95 10.03 22.17 0.22 -0.72 16 10 C -0.07 -0.52 10.05 22.36 0.22 -0.30 16 11 C -0.12 -1.31 10.02 22.23 0.22 -1.08 16 12 C -0.06 -1.12 10.10 22.54 0.23 -0.89 16 13 C -0.19 -4.68 6.26 -20.15 -0.13 -4.81 16 14 C 0.56 19.97 8.12 86.74 0.70 20.67 16 15 O -0.56 -25.38 18.00 -3.94 -0.07 -25.46 16 16 C 0.00 0.12 3.50 29.85 0.10 0.23 16 17 C -0.52 -28.82 8.96 25.60 0.23 -28.59 16 18 H 0.04 2.42 7.30 -2.91 -0.02 2.40 16 19 C 0.00 0.23 5.47 84.65 0.46 0.69 16 20 N -0.95 -59.22 13.96 21.44 0.30 -58.92 16 21 Si 0.94 42.87 27.47 68.60 1.88 44.75 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.23 -9.30 6.54 99.48 0.65 -8.65 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.01 6.95 -2.38 -0.02 1.99 16 28 H 0.15 3.31 7.05 -2.91 -0.02 3.29 16 29 H 0.12 1.87 8.11 -2.38 -0.02 1.85 16 30 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 32 H 0.18 -0.05 8.06 -2.91 -0.02 -0.08 16 33 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.04 1.75 7.20 -2.39 -0.02 1.73 16 36 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -81.22 319.01 4.74 -76.48 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.01 Total: 5.14 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 4.11 Total: -13.79 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -2.19 Total: -87.12 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.07 Total: -25.46 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Total: -81.22 4.74 -76.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766028621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.598 kcal (2) G-P(sol) polarization free energy of solvation -81.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds