Wall clock time and date at job start Mon Mar 30 2020 01:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47651 * 2 1 4 4 H 1.09000 * 109.46899 * 305.00395 * 3 2 1 5 5 C 1.47198 * 109.47357 * 185.00160 * 3 2 1 6 6 N 3.43563 * 154.82777 * 351.56615 * 2 1 3 7 7 N 1.46503 * 109.47078 * 64.99761 * 3 2 1 8 8 C 1.34768 * 119.99956 * 205.00303 * 7 3 2 9 9 O 1.21283 * 120.00153 * 0.02562 * 8 7 3 10 10 C 1.50707 * 119.99792 * 180.02562 * 8 7 3 11 11 C 1.50701 * 109.46977 * 180.02562 * 10 8 7 12 12 C 1.37637 * 120.12547 * 264.99579 * 11 10 8 13 13 C 1.38611 * 120.25133 * 180.30203 * 12 11 10 14 14 C 1.38661 * 120.49834 * 359.43795 * 13 12 11 15 15 C 1.37598 * 120.24462 * 0.56532 * 14 13 12 16 16 C 1.40693 * 120.13116 * 85.02206 * 11 10 8 17 17 C 1.41397 * 120.24389 * 359.95203 * 16 11 10 18 18 H 1.08003 * 119.99955 * 334.08061 * 17 16 11 19 19 C 1.39940 * 120.00210 * 154.08724 * 17 16 11 20 20 N 1.30822 * 119.99912 * 343.62218 * 19 17 16 21 21 Si 1.86803 * 120.00192 * 163.63321 * 19 17 16 22 22 H 1.48496 * 109.47262 * 59.99447 * 21 19 17 23 23 H 1.48504 * 109.47090 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46694 * 299.99081 * 21 19 17 25 25 H 1.08998 * 109.47161 * 300.00344 * 1 2 3 26 26 H 1.09009 * 109.47142 * 59.99721 * 1 2 3 27 27 H 1.08990 * 109.47785 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47312 * 239.99917 * 2 1 3 29 29 H 1.09004 * 109.47546 * 120.00482 * 2 1 3 30 30 H 0.97001 * 119.99456 * 25.00927 * 7 3 2 31 31 H 1.08998 * 109.47152 * 59.99513 * 10 8 7 32 32 H 1.09003 * 109.46597 * 299.99418 * 10 8 7 33 33 H 1.08001 * 119.87531 * 0.02562 * 12 11 10 34 34 H 1.07996 * 119.75611 * 179.70394 * 13 12 11 35 35 H 1.07998 * 119.87738 * 180.30536 * 14 13 12 36 36 H 1.08001 * 120.12776 * 179.74520 * 15 14 13 37 37 H 0.97001 * 120.00439 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5071 1.4442 -0.1210 6 7 4.6393 1.4455 -0.2143 7 7 1.6525 2.0975 1.2518 8 6 1.5257 3.4384 1.2995 9 8 1.7321 4.1028 0.3061 10 6 1.1276 4.1122 2.5874 11 6 1.0567 5.6023 2.3737 12 6 2.1394 6.3960 2.6771 13 6 2.0749 7.7676 2.4874 14 6 0.9257 8.3545 1.9799 15 6 -0.1689 7.5805 1.6696 16 6 -0.1167 6.1876 1.8637 17 6 -1.2352 5.3822 1.5479 18 1 -1.0964 4.3425 1.2903 19 6 -2.5218 5.9321 1.5692 20 7 -2.7366 7.0705 2.1768 21 14 -3.9327 5.0404 0.7302 22 1 -4.1055 3.6993 1.3440 23 1 -5.1826 5.8250 0.8961 24 1 -3.6317 4.8879 -0.7160 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.4872 1.5661 2.0463 31 1 1.8665 3.8899 3.3573 32 1 0.1515 3.7440 2.9034 33 1 3.0412 5.9490 3.0687 34 1 2.9275 8.3833 2.7326 35 1 0.8881 9.4235 1.8314 36 1 -1.0644 8.0401 1.2783 37 1 -3.6283 7.4520 2.1913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766529482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:51 Heat of formation + Delta-G solvation = -3.958363 kcal Electronic energy + Delta-G solvation = -20318.362055 eV Core-core repulsion = 17252.913685 eV Total energy + Delta-G solvation = -3065.448370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.67064 -37.68673 -36.74116 -35.17248 -33.61920 -32.42112 -31.51327 -29.45387 -27.98055 -26.31065 -24.91517 -22.15139 -21.01844 -20.85886 -19.40205 -18.18399 -17.16125 -16.60123 -16.30359 -15.37570 -14.60160 -14.55270 -14.16577 -13.81986 -13.66830 -13.52055 -13.27338 -13.16368 -12.68452 -12.57236 -12.15986 -11.87028 -11.75454 -11.57136 -11.34464 -11.18859 -11.11832 -11.05314 -10.98891 -10.69510 -10.41108 -9.48580 -9.40821 -9.30926 -9.16321 -9.15362 -7.30965 -7.29415 -6.73460 -4.34528 2.48393 2.75965 2.81659 3.00192 3.06038 3.08125 3.14184 3.28028 3.64922 3.92756 3.96390 4.60716 4.66554 4.80136 5.07339 5.32512 5.43063 5.56769 5.71238 5.77326 5.83439 5.99456 6.10700 6.11082 6.29165 6.40093 6.50092 6.51982 6.79770 7.08525 7.29951 7.42731 7.52340 7.62135 7.72910 7.93472 8.06345 8.13937 8.31412 8.63655 8.69432 8.91317 9.01792 10.20833 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.006808 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.374634 B = 4112.114025 C = 5704.275117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.240 3.760 4 H 0.129 0.871 5 C 0.199 3.801 6 N -0.430 5.430 7 N -0.735 5.735 8 C 0.516 3.484 9 O -0.510 6.510 10 C -0.069 4.069 11 C -0.184 4.184 12 C -0.081 4.081 13 C -0.239 4.239 14 C -0.106 4.106 15 C -0.159 4.159 16 C 0.130 3.870 17 C -0.457 4.457 18 H 0.075 0.925 19 C 0.077 3.923 20 N -0.795 5.795 21 Si 0.903 3.097 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.404 0.596 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 -12.386 -0.415 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C 0.131 3.869 4 H 0.147 0.853 5 C -0.121 4.121 6 N -0.106 5.106 7 N -0.391 5.391 8 C 0.304 3.696 9 O -0.382 6.382 10 C -0.108 4.108 11 C -0.186 4.186 12 C -0.099 4.099 13 C -0.259 4.259 14 C -0.125 4.125 15 C -0.178 4.178 16 C 0.127 3.873 17 C -0.487 4.487 18 H 0.093 0.907 19 C -0.140 4.140 20 N -0.420 5.420 21 Si 0.728 3.272 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.239 0.761 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.146 -11.680 -1.218 11.938 hybrid contribution -1.095 -0.486 0.052 1.199 sum 1.052 -12.166 -1.166 12.267 Atomic orbital electron populations 1.21776 0.93619 1.02241 1.03470 1.21760 0.97693 0.92758 1.03903 1.18352 0.80867 0.96024 0.91652 0.85331 1.29973 0.95775 0.92866 0.93470 1.81137 1.13143 1.08591 1.07777 1.46230 1.72794 1.07991 1.12100 1.21488 0.75436 0.80620 0.92069 1.90714 1.47328 1.63562 1.36643 1.20267 1.02611 0.95064 0.92888 1.19027 0.97024 0.91387 1.11174 1.20310 0.95894 0.93766 0.99932 1.20309 0.98266 0.94342 1.12941 1.20684 0.94230 0.97433 1.00135 1.21293 0.97559 0.94304 1.04658 1.17328 0.90849 0.92090 0.87007 1.19428 0.90284 0.97663 1.41302 0.90710 1.25880 1.00395 0.94724 0.93043 1.69810 1.23678 1.17175 1.31384 0.86455 0.79628 0.80150 0.81012 1.19025 1.20413 1.18862 0.91564 0.91870 0.92018 0.89814 0.90571 0.76092 0.90421 0.88145 0.89829 0.89697 0.89592 0.86539 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.80 37.15 0.36 -0.77 16 2 C -0.12 -0.89 5.43 -26.73 -0.15 -1.03 16 3 C 0.24 2.70 2.41 -70.71 -0.17 2.53 16 4 H 0.13 1.58 7.58 -51.93 -0.39 1.19 16 5 C 0.20 2.79 14.93 -20.76 -0.31 2.48 16 6 N -0.43 -7.09 18.54 42.16 0.78 -6.31 16 7 N -0.73 -9.07 4.50 -56.54 -0.25 -9.32 16 8 C 0.52 9.17 7.41 -10.99 -0.08 9.08 16 9 O -0.51 -11.47 15.70 5.55 0.09 -11.38 16 10 C -0.07 -1.25 5.18 -29.03 -0.15 -1.41 16 11 C -0.18 -4.31 4.43 -103.91 -0.46 -4.78 16 12 C -0.08 -1.86 9.66 -39.66 -0.38 -2.24 16 13 C -0.24 -5.59 10.05 -39.29 -0.39 -5.98 16 14 C -0.11 -2.59 10.02 -39.66 -0.40 -2.98 16 15 C -0.16 -4.19 8.68 -38.87 -0.34 -4.53 16 16 C 0.13 3.37 5.56 -106.83 -0.59 2.78 16 17 C -0.46 -11.51 8.14 -37.74 -0.31 -11.82 16 18 H 0.07 1.78 6.68 -52.48 -0.35 1.43 16 19 C 0.08 1.87 5.16 -17.34 -0.09 1.78 16 20 N -0.79 -20.05 10.97 55.55 0.61 -19.44 16 21 Si 0.90 18.06 29.59 -169.99 -5.03 13.03 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 H 0.07 0.53 7.75 -51.93 -0.40 0.13 16 26 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.40 3.59 8.60 -40.82 -0.35 3.23 16 31 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.10 1.75 7.06 -51.93 -0.37 1.39 16 33 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 3.15 6.22 -52.49 -0.33 2.83 16 37 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -31.69 324.46 -7.08 -38.76 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.70 Total: 6.65 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -3.46 Total: -16.89 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 1.14 Total: -35.07 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.69 -7.08 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766529482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.805 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds