Wall clock time and date at job start Mon Mar 30 2020 01:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47651 * 2 1 4 4 H 1.09000 * 109.46899 * 305.00395 * 3 2 1 5 5 C 1.47198 * 109.47357 * 185.00160 * 3 2 1 6 6 N 3.43563 * 154.82777 * 351.56615 * 2 1 3 7 7 N 1.46503 * 109.47078 * 64.99761 * 3 2 1 8 8 C 1.34768 * 119.99956 * 205.00303 * 7 3 2 9 9 O 1.21283 * 120.00153 * 0.02562 * 8 7 3 10 10 C 1.50707 * 119.99792 * 180.02562 * 8 7 3 11 11 C 1.50701 * 109.46977 * 180.02562 * 10 8 7 12 12 C 1.37637 * 120.12547 * 264.99579 * 11 10 8 13 13 C 1.38611 * 120.25133 * 180.30203 * 12 11 10 14 14 C 1.38661 * 120.49834 * 359.43795 * 13 12 11 15 15 C 1.37598 * 120.24462 * 0.56532 * 14 13 12 16 16 C 1.40693 * 120.13116 * 85.02206 * 11 10 8 17 17 C 1.41397 * 120.24389 * 359.95203 * 16 11 10 18 18 H 1.08003 * 119.99955 * 334.08061 * 17 16 11 19 19 C 1.39940 * 120.00210 * 154.08724 * 17 16 11 20 20 N 1.30822 * 119.99912 * 343.62218 * 19 17 16 21 21 Si 1.86803 * 120.00192 * 163.63321 * 19 17 16 22 22 H 1.48496 * 109.47262 * 59.99447 * 21 19 17 23 23 H 1.48504 * 109.47090 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46694 * 299.99081 * 21 19 17 25 25 H 1.08998 * 109.47161 * 300.00344 * 1 2 3 26 26 H 1.09009 * 109.47142 * 59.99721 * 1 2 3 27 27 H 1.08990 * 109.47785 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47312 * 239.99917 * 2 1 3 29 29 H 1.09004 * 109.47546 * 120.00482 * 2 1 3 30 30 H 0.97001 * 119.99456 * 25.00927 * 7 3 2 31 31 H 1.08998 * 109.47152 * 59.99513 * 10 8 7 32 32 H 1.09003 * 109.46597 * 299.99418 * 10 8 7 33 33 H 1.08001 * 119.87531 * 0.02562 * 12 11 10 34 34 H 1.07996 * 119.75611 * 179.70394 * 13 12 11 35 35 H 1.07998 * 119.87738 * 180.30536 * 14 13 12 36 36 H 1.08001 * 120.12776 * 179.74520 * 15 14 13 37 37 H 0.97001 * 120.00439 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5071 1.4442 -0.1210 6 7 4.6393 1.4455 -0.2143 7 7 1.6525 2.0975 1.2518 8 6 1.5257 3.4384 1.2995 9 8 1.7321 4.1028 0.3061 10 6 1.1276 4.1122 2.5874 11 6 1.0567 5.6023 2.3737 12 6 2.1394 6.3960 2.6771 13 6 2.0749 7.7676 2.4874 14 6 0.9257 8.3545 1.9799 15 6 -0.1689 7.5805 1.6696 16 6 -0.1167 6.1876 1.8637 17 6 -1.2352 5.3822 1.5479 18 1 -1.0964 4.3425 1.2903 19 6 -2.5218 5.9321 1.5692 20 7 -2.7366 7.0705 2.1768 21 14 -3.9327 5.0404 0.7302 22 1 -4.1055 3.6993 1.3440 23 1 -5.1826 5.8250 0.8961 24 1 -3.6317 4.8879 -0.7160 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.4872 1.5661 2.0463 31 1 1.8665 3.8899 3.3573 32 1 0.1515 3.7440 2.9034 33 1 3.0412 5.9490 3.0687 34 1 2.9275 8.3833 2.7326 35 1 0.8881 9.4235 1.8314 36 1 -1.0644 8.0401 1.2783 37 1 -3.6283 7.4520 2.1913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766529482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:51 Heat of formation + Delta-G solvation = -22.961471 kcal Electronic energy + Delta-G solvation = -20319.186092 eV Core-core repulsion = 17252.913685 eV Total energy + Delta-G solvation = -3066.272407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01253 -39.30818 -38.06766 -36.28619 -35.45238 -33.70208 -32.88072 -31.30797 -29.19630 -27.73579 -26.66730 -22.88854 -22.79542 -22.40119 -20.98990 -19.30856 -18.97269 -17.91819 -17.48136 -17.02477 -16.25509 -16.04985 -15.45638 -15.11488 -14.93813 -14.79015 -14.53980 -14.39974 -14.30615 -13.90256 -13.47636 -13.31805 -13.08310 -12.85608 -12.71057 -12.67281 -12.53657 -12.44726 -12.08007 -12.03524 -11.76393 -11.29750 -11.17722 -10.97157 -10.80030 -10.38086 -9.20265 -9.13926 -8.54330 -6.24163 1.01847 1.14840 1.42481 1.42855 1.52815 1.60372 1.66460 1.77637 2.25370 2.49837 2.83854 2.93314 3.78690 3.83699 4.08826 4.20171 4.40355 4.43948 4.55711 4.65288 4.67206 4.72927 4.84802 4.92460 5.09546 5.19427 5.21175 5.25189 5.39369 5.43614 5.56028 5.58101 5.81215 6.06911 6.20010 6.24255 6.41943 6.44965 6.61180 6.77983 7.03627 7.15399 7.38702 8.42171 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.006808 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.374634 B = 4112.114025 C = 5704.275117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C 0.240 3.760 4 H 0.120 0.880 5 C 0.219 3.781 6 N -0.475 5.475 7 N -0.711 5.711 8 C 0.521 3.479 9 O -0.565 6.565 10 C -0.069 4.069 11 C -0.188 4.188 12 C -0.094 4.094 13 C -0.248 4.248 14 C -0.118 4.118 15 C -0.194 4.194 16 C 0.098 3.902 17 C -0.478 4.478 18 H 0.082 0.918 19 C 0.035 3.965 20 N -0.828 5.828 21 Si 0.972 3.028 22 H -0.246 1.246 23 H -0.274 1.274 24 H -0.269 1.269 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.424 0.576 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -15.055 0.081 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C 0.131 3.869 4 H 0.137 0.863 5 C -0.101 4.101 6 N -0.152 5.152 7 N -0.368 5.368 8 C 0.309 3.691 9 O -0.441 6.441 10 C -0.109 4.109 11 C -0.190 4.190 12 C -0.112 4.112 13 C -0.267 4.267 14 C -0.136 4.136 15 C -0.214 4.214 16 C 0.095 3.905 17 C -0.508 4.508 18 H 0.100 0.900 19 C -0.179 4.179 20 N -0.455 5.455 21 Si 0.793 3.207 22 H -0.170 1.170 23 H -0.199 1.199 24 H -0.194 1.194 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.264 0.736 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.979 -14.404 -0.680 14.555 hybrid contribution -0.968 0.357 -0.070 1.034 sum 1.011 -14.047 -0.749 14.104 Atomic orbital electron populations 1.21796 0.93438 1.03278 1.02667 1.21780 0.97557 0.89749 1.05812 1.18684 0.79263 0.98386 0.90528 0.86283 1.30408 0.96087 0.91401 0.92162 1.81158 1.14611 1.10293 1.09167 1.45906 1.70876 1.06425 1.13564 1.21277 0.74841 0.82058 0.90928 1.90705 1.50104 1.65191 1.38149 1.20301 1.04284 0.92053 0.94248 1.19539 0.96022 0.94330 1.09138 1.20730 0.96878 0.93878 0.99710 1.20675 0.98554 0.95178 1.12272 1.20928 0.94250 0.98324 1.00133 1.21312 0.97801 0.95332 1.06923 1.17744 0.92477 0.92261 0.87976 1.19657 0.90833 0.98077 1.42210 0.89997 1.26726 1.02763 0.95391 0.93065 1.69891 1.24521 1.18654 1.32408 0.85402 0.76249 0.79726 0.79333 1.16966 1.19904 1.19368 0.92178 0.92917 0.90080 0.88188 0.88411 0.73645 0.87026 0.87293 0.87055 0.87234 0.88009 0.88559 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.80 71.98 0.71 -1.08 16 2 C -0.11 -1.22 5.43 30.59 0.17 -1.05 16 3 C 0.24 4.87 2.41 43.19 0.10 4.97 16 4 H 0.12 2.79 7.58 -2.39 -0.02 2.77 16 5 C 0.22 5.76 14.93 89.44 1.34 7.10 16 6 N -0.47 -15.18 18.54 20.01 0.37 -14.81 16 7 N -0.71 -15.75 4.50 -451.20 -2.03 -17.78 16 8 C 0.52 17.73 7.41 87.66 0.65 18.38 16 9 O -0.56 -25.33 15.70 -3.04 -0.05 -25.38 16 10 C -0.07 -2.41 5.18 29.10 0.15 -2.26 16 11 C -0.19 -8.76 4.43 -19.41 -0.09 -8.85 16 12 C -0.09 -4.23 9.66 22.22 0.21 -4.01 16 13 C -0.25 -11.45 10.05 22.46 0.23 -11.23 16 14 C -0.12 -5.86 10.02 22.22 0.22 -5.64 16 15 C -0.19 -10.65 8.68 22.73 0.20 -10.45 16 16 C 0.10 5.19 5.56 -21.29 -0.12 5.08 16 17 C -0.48 -24.39 8.14 23.46 0.19 -24.20 16 18 H 0.08 3.90 6.68 -2.91 -0.02 3.88 16 19 C 0.04 1.71 5.16 85.26 0.44 2.15 16 20 N -0.83 -42.90 10.97 21.82 0.24 -42.66 16 21 Si 0.97 36.82 29.59 68.60 2.03 38.85 16 22 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 25 H 0.06 0.78 7.75 -2.39 -0.02 0.76 16 26 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.42 5.99 8.60 -92.71 -0.80 5.19 16 31 H 0.11 3.07 8.05 -2.39 -0.02 3.05 16 32 H 0.11 3.60 7.06 -2.39 -0.02 3.59 16 33 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 34 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.10 5.52 6.22 -2.91 -0.02 5.51 16 37 H 0.28 13.48 8.30 -92.71 -0.77 12.72 16 Total: -1.00 -71.33 324.46 5.26 -66.07 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.30 Total: 26.81 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 4.40 Total: -31.10 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -1.42 Total: -75.25 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -71.33 5.26 -66.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766529482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.110 kcal (2) G-P(sol) polarization free energy of solvation -71.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds