Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.46803 * 2 1 4 4 N 1.41598 * 113.99770 * 180.02562 * 3 2 1 5 5 C 1.29582 * 119.99900 * 180.02562 * 4 3 2 6 6 C 1.47153 * 120.00158 * 180.02562 * 5 4 3 7 7 C 1.36090 * 126.72488 * 179.97438 * 6 5 4 8 8 N 1.36049 * 109.72486 * 180.02562 * 7 6 5 9 9 C 1.46506 * 124.84249 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47114 * 265.00080 * 9 8 7 11 11 H 1.07999 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00049 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00237 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00229 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46949 * 59.99742 * 14 12 10 16 16 H 1.48495 * 109.47118 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46897 * 299.99837 * 14 12 10 18 18 C 1.37889 * 110.31386 * 0.02562 * 8 7 6 19 19 C 1.39134 * 133.19053 * 180.02562 * 18 8 7 20 20 C 1.37749 * 119.92849 * 179.97438 * 19 18 8 21 21 C 1.38780 * 120.63893 * 0.02562 * 20 19 18 22 22 C 1.37726 * 120.31895 * 0.02562 * 21 20 19 23 23 C 1.39332 * 119.66867 * 0.25970 * 22 21 20 24 24 H 1.09004 * 109.47266 * 299.99455 * 1 2 3 25 25 H 1.09000 * 109.47442 * 59.99937 * 1 2 3 26 26 H 1.09007 * 109.46793 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46780 * 240.00343 * 2 1 3 28 28 H 1.08999 * 109.46954 * 120.00263 * 2 1 3 29 29 H 1.08003 * 120.00085 * 359.97438 * 5 4 3 30 30 H 1.07996 * 125.13690 * 0.03667 * 7 6 5 31 31 H 1.09002 * 109.47048 * 24.99881 * 9 8 7 32 32 H 1.09001 * 109.47072 * 144.99878 * 9 8 7 33 33 H 0.96999 * 120.00233 * 179.97438 * 13 12 10 34 34 H 1.07992 * 120.03995 * 0.02562 * 19 18 8 35 35 H 1.08002 * 119.68084 * 179.97438 * 20 19 18 36 36 H 1.08008 * 119.84323 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.16231 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4591 -0.0006 5 6 3.9751 2.6290 -0.0001 6 6 5.4420 2.7453 -0.0013 7 6 6.1671 3.8970 -0.0015 8 7 7.4955 3.6032 -0.0033 9 6 8.5724 4.5966 -0.0035 10 6 9.0240 4.8476 -1.4191 11 1 8.5555 4.3204 -2.2369 12 6 10.0353 5.7504 -1.6702 13 7 10.6056 6.3929 -0.6744 14 14 10.5956 6.0611 -3.4250 15 1 9.4536 6.5695 -4.2266 16 1 11.6870 7.0680 -3.4251 17 1 11.0912 4.7932 -4.0181 18 6 7.6837 2.2373 -0.0049 19 6 8.8186 1.4324 -0.0065 20 6 8.6886 0.0610 -0.0074 21 6 7.4331 -0.5304 -0.0072 22 6 6.2975 0.2489 -0.0066 23 6 6.4138 1.6373 -0.0118 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.3629 3.5188 0.0003 30 1 5.7508 4.8935 -0.0003 31 1 8.2084 5.5271 0.4322 32 1 9.4108 4.2236 0.5847 33 1 11.3173 7.0278 -0.8511 34 1 9.8004 1.8822 -0.0063 35 1 9.5723 -0.5599 -0.0090 36 1 7.3461 -1.6069 -0.0083 37 1 5.3217 -0.2140 -0.0069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767469531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = 47.048936 kcal Electronic energy + Delta-G solvation = -19643.840011 eV Core-core repulsion = 16580.603484 eV Total energy + Delta-G solvation = -3063.236528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.15309 -38.47127 -37.91306 -35.91941 -35.00105 -33.02801 -31.27250 -31.12797 -29.85326 -28.44590 -25.33461 -23.92787 -23.43171 -23.23530 -21.75467 -20.19974 -18.79956 -18.41235 -17.64462 -17.09471 -16.58549 -16.48834 -16.19822 -15.75054 -15.64977 -14.96495 -14.69730 -14.29506 -14.22957 -13.82072 -13.59500 -13.37413 -13.28045 -13.03182 -12.71517 -12.66120 -12.51811 -12.41003 -12.29637 -12.25397 -11.72520 -11.56144 -10.92024 -10.73680 -10.69614 -10.05611 -9.05853 -8.48867 -8.19401 -6.50636 0.10943 0.66466 1.00651 1.39072 1.39629 1.48296 1.77317 2.18894 2.31813 2.38229 2.97567 3.10755 3.75077 3.88961 4.03193 4.17647 4.24226 4.32755 4.33664 4.41860 4.54885 4.60488 4.68722 4.81215 4.88381 4.94508 4.99046 5.01947 5.03252 5.23103 5.24658 5.51005 5.54967 5.65968 5.77068 5.81859 5.87484 6.04949 6.35776 6.44817 6.65531 6.75172 7.21726 8.72285 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.004233 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.849583 B = 6612.726982 C = 7364.662094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 O -0.270 6.270 4 N -0.378 5.378 5 C 0.204 3.796 6 C -0.198 4.198 7 C 0.123 3.877 8 N -0.456 5.456 9 C 0.250 3.750 10 C -0.556 4.556 11 H 0.053 0.947 12 C 0.025 3.975 13 N -0.918 5.918 14 Si 0.965 3.035 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.273 1.273 18 C 0.068 3.932 19 C -0.135 4.135 20 C -0.107 4.107 21 C -0.145 4.145 22 C -0.083 4.083 23 C -0.099 4.099 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.143 0.857 30 H 0.201 0.799 31 H 0.046 0.954 32 H 0.026 0.974 33 H 0.272 0.728 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 -10.445 1.691 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.010 4.010 3 O -0.283 6.283 4 N -0.127 5.127 5 C -0.004 4.004 6 C -0.208 4.208 7 C -0.014 4.014 8 N -0.133 5.133 9 C 0.130 3.870 10 C -0.594 4.594 11 H 0.071 0.929 12 C -0.177 4.177 13 N -0.556 5.556 14 Si 0.789 3.211 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.198 1.198 18 C -0.038 4.038 19 C -0.155 4.155 20 C -0.127 4.127 21 C -0.164 4.164 22 C -0.102 4.102 23 C -0.104 4.104 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.826 -10.883 1.752 16.167 hybrid contribution 0.436 1.253 -0.743 1.521 sum -11.391 -9.629 1.008 14.950 Atomic orbital electron populations 1.21785 0.91142 1.04103 1.02977 1.22545 0.95679 0.81969 1.00857 1.89723 1.14390 1.30036 1.94193 1.76816 0.92253 1.24806 1.18818 1.23416 0.91746 0.95046 0.90147 1.18279 0.89458 0.91597 1.21444 1.22444 0.81896 0.99921 0.97107 1.44594 1.06903 1.05196 1.56588 1.19361 0.84108 0.86106 0.97398 1.21482 1.20288 1.25053 0.92580 0.92862 1.25680 0.95542 0.94736 1.01699 1.69989 1.25505 1.27025 1.33077 0.85500 0.78214 0.78132 0.79266 1.19306 1.20132 1.19841 1.18653 0.96097 0.83535 1.05503 1.20318 0.95847 0.94090 1.05248 1.21066 0.98819 0.92609 1.00161 1.21207 0.91429 1.00669 1.03100 1.20687 0.99372 0.90881 0.99214 1.19272 0.91229 0.94047 1.05872 0.91854 0.91951 0.88188 0.93056 0.92901 0.84019 0.78223 0.93628 0.95589 0.91853 0.87280 0.83271 0.83138 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.07 1.50 7.12 71.98 0.51 2.01 16 3 O -0.27 -8.11 11.36 -38.78 -0.44 -8.55 16 4 N -0.38 -12.41 10.14 -52.50 -0.53 -12.94 16 5 C 0.20 6.33 11.14 87.37 0.97 7.30 16 6 C -0.20 -7.02 6.27 -19.03 -0.12 -7.14 16 7 C 0.12 4.40 11.23 83.54 0.94 5.34 16 8 N -0.46 -19.47 2.74 -519.08 -1.42 -20.89 16 9 C 0.25 12.07 5.72 85.63 0.49 12.56 16 10 C -0.56 -29.34 9.39 25.60 0.24 -29.10 16 11 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 12 C 0.02 1.30 5.46 84.65 0.46 1.76 16 13 N -0.92 -50.23 13.29 21.45 0.28 -49.95 16 14 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 C 0.07 2.84 6.79 38.94 0.26 3.10 16 19 C -0.13 -5.22 9.97 22.37 0.22 -5.00 16 20 C -0.11 -3.34 10.01 22.28 0.22 -3.12 16 21 C -0.15 -4.26 10.03 22.28 0.22 -4.04 16 22 C -0.08 -2.81 9.81 22.41 0.22 -2.59 16 23 C -0.10 -3.84 6.26 -20.07 -0.13 -3.96 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.20 5.60 8.06 -2.91 -0.02 5.58 16 31 H 0.05 2.21 8.11 -2.39 -0.02 2.20 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 36 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.13 4.11 7.25 -2.91 -0.02 4.09 16 Total: -1.00 -62.33 328.48 6.23 -56.10 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.05 Total: 16.83 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 5.26 Total: -24.35 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -1.67 Total: -83.78 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.44 Total: -8.55 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -62.33 6.23 -56.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767469531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.149 kcal (2) G-P(sol) polarization free energy of solvation -62.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds