Wall clock time and date at job start Mon Mar 30 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35834 * 117.00123 * 2 1 4 4 C 1.39815 * 119.61836 * 0.02562 * 3 2 1 5 5 C 1.36080 * 120.76286 * 180.02562 * 4 3 2 6 6 C 1.40241 * 119.85114 * 359.97438 * 5 4 3 7 7 C 1.41588 * 119.87844 * 0.23836 * 6 5 4 8 8 C 1.37640 * 119.62169 * 180.50946 * 3 2 1 9 9 N 1.33828 * 119.97106 * 180.28770 * 7 6 5 10 10 C 1.31325 * 121.66829 * 359.75322 * 9 7 6 11 11 C 1.38734 * 121.84217 * 359.97438 * 10 9 7 12 12 C 1.38676 * 119.70641 * 0.02562 * 11 10 9 13 13 N 1.38650 * 121.03260 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00230 * 296.04321 * 13 12 11 15 15 C 1.46906 * 111.00229 * 59.99775 * 13 12 11 16 16 C 1.50696 * 109.47351 * 169.99871 * 15 13 12 17 17 H 1.08007 * 119.99780 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00506 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00248 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99357 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46811 * 90.00524 * 20 18 16 22 22 H 1.48502 * 109.46643 * 209.99901 * 20 18 16 23 23 H 1.48499 * 109.47300 * 329.99977 * 20 18 16 24 24 H 1.09000 * 109.46819 * 299.99706 * 1 2 3 25 25 H 1.08997 * 109.47012 * 59.99610 * 1 2 3 26 26 H 1.08993 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.61876 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.07495 * 179.97438 * 5 4 3 29 29 H 1.08002 * 120.18733 * 359.49032 * 8 3 2 30 30 H 1.07995 * 119.07884 * 179.97438 * 10 9 7 31 31 H 1.07999 * 120.14210 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.47401 * 183.95511 * 14 13 12 33 33 H 1.09001 * 109.46874 * 63.95523 * 14 13 12 34 34 H 1.09004 * 109.46970 * 303.95657 * 14 13 12 35 35 H 1.08997 * 109.46995 * 289.99851 * 15 13 12 36 36 H 1.09001 * 109.46848 * 49.99857 * 15 13 12 37 37 H 0.96999 * 119.99895 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2765 2.3778 0.0005 5 6 1.8699 3.6023 0.0000 6 6 3.2690 3.7000 -0.0005 7 6 4.0581 2.5245 -0.0056 8 6 3.4206 1.2732 -0.0106 9 7 5.3933 2.6155 -0.0003 10 6 6.0051 3.7775 0.0048 11 6 5.3032 4.9742 0.0045 12 6 3.9166 4.9577 -0.0008 13 7 3.1877 6.1371 -0.0007 14 6 3.4184 6.8986 1.2342 15 6 3.4988 6.9484 -1.1853 16 6 2.5222 8.0921 -1.2815 17 1 1.7481 8.2053 -0.5369 18 6 2.6168 8.9941 -2.3200 19 7 1.7649 9.9924 -2.4037 20 14 3.9562 8.7987 -3.6075 21 1 3.4548 7.9504 -4.7185 22 1 4.3334 10.1343 -4.1358 23 1 5.1449 8.1561 -2.9916 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.1988 2.3069 0.0014 28 1 1.2650 4.4970 0.0000 29 1 4.0059 0.3655 -0.0106 30 1 7.0847 3.8022 0.0094 31 1 5.8345 5.9145 0.0084 32 1 2.7820 7.7835 1.2397 33 1 4.4640 7.2026 1.2835 34 1 3.1804 6.2745 2.0956 35 1 4.5117 7.3418 -1.1004 36 1 3.4230 6.3297 -2.0795 37 1 1.8313 10.6267 -3.1345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770443491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:55 Heat of formation + Delta-G solvation = 32.785169 kcal Electronic energy + Delta-G solvation = -20353.348881 eV Core-core repulsion = 17289.493830 eV Total energy + Delta-G solvation = -3063.855051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84559 -39.32736 -37.15492 -35.79722 -32.86214 -31.68833 -29.97901 -29.67663 -28.02270 -27.19706 -25.52585 -23.60928 -23.02774 -21.89687 -20.25806 -18.49816 -17.52280 -17.19712 -16.62981 -15.83824 -15.79641 -15.26986 -14.86469 -14.42636 -14.06629 -13.75964 -13.55764 -13.51991 -13.28031 -12.96296 -12.46155 -12.44804 -12.08112 -11.79836 -11.57230 -11.27311 -11.09638 -10.89889 -10.77013 -10.66864 -10.10339 -9.63745 -9.47470 -9.31544 -8.69426 -8.38704 -7.84918 -7.74054 -6.17769 -4.17139 0.57334 1.03616 2.18465 3.05806 3.14232 3.20977 3.28561 3.30394 4.29521 4.29820 4.32592 4.58650 4.77906 4.99173 5.02454 5.02528 5.12849 5.15364 5.17050 5.26269 5.33312 5.58443 5.76082 5.87322 5.96036 5.99520 6.14435 6.21899 6.36858 6.46111 6.53149 6.60411 6.68257 6.75513 6.86685 7.33762 7.41832 7.54771 7.89347 8.14072 8.48122 8.88408 9.42318 10.94651 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.005201 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.220970 B = 5382.615617 C = 6001.146018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.147 3.853 4 C -0.213 4.213 5 C -0.016 4.016 6 C -0.126 4.126 7 C 0.174 3.826 8 C -0.158 4.158 9 N -0.502 5.502 10 C 0.155 3.845 11 C -0.241 4.241 12 C 0.198 3.802 13 N -0.507 5.507 14 C 0.043 3.957 15 C 0.169 3.831 16 C -0.515 4.515 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.895 5.895 20 Si 0.871 3.129 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.267 1.267 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.132 0.868 28 H 0.149 0.851 29 H 0.138 0.862 30 H 0.154 0.846 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.024 0.976 34 H 0.052 0.948 35 H -0.001 1.001 36 H 0.026 0.974 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -15.133 5.934 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.100 3.900 4 C -0.231 4.231 5 C -0.035 4.035 6 C -0.129 4.129 7 C 0.051 3.949 8 C -0.178 4.178 9 N -0.212 5.212 10 C -0.016 4.016 11 C -0.264 4.264 12 C 0.094 3.906 13 N -0.229 5.229 14 C -0.103 4.103 15 C 0.045 3.955 16 C -0.554 4.554 17 H 0.102 0.898 18 C -0.129 4.129 19 N -0.533 5.533 20 Si 0.698 3.302 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.192 1.192 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.150 0.850 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.171 0.829 31 H 0.151 0.849 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.016 0.984 36 H 0.044 0.956 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.219 -16.084 5.801 17.141 hybrid contribution 0.804 1.256 -0.858 1.721 sum 2.023 -14.827 4.943 15.760 Atomic orbital electron populations 1.23074 0.78350 1.03798 1.01652 1.86045 1.21431 1.26966 1.88612 1.18874 0.91879 0.84056 0.95209 1.21087 1.00322 0.92182 1.09522 1.21012 0.93432 0.97897 0.91124 1.18782 0.94878 0.92622 1.06595 1.18362 0.89130 0.91635 0.95733 1.19848 0.90870 0.96855 1.10181 1.68030 1.09077 1.28107 1.15940 1.22668 1.00126 0.87200 0.91600 1.22707 0.95724 1.00299 1.07636 1.19444 0.90170 0.92060 0.88909 1.59347 1.54565 1.03785 1.05164 1.22308 1.00006 0.98533 0.89449 1.20302 0.96039 0.92540 0.86593 1.20925 1.14798 1.07606 1.12022 0.89805 1.24841 0.95707 0.94919 0.97428 1.69871 1.36351 1.14819 1.32258 0.86924 0.82945 0.77808 0.82529 1.20005 1.20935 1.19182 0.92493 0.92421 0.88350 0.85034 0.83302 0.84413 0.82860 0.84867 0.89132 0.95749 0.92958 0.98357 0.95609 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.80 101.05 0.99 1.21 16 2 O -0.32 -3.94 10.48 -19.22 -0.20 -4.14 16 3 C 0.15 2.07 6.67 -39.21 -0.26 1.81 16 4 C -0.21 -2.91 8.94 -39.77 -0.36 -3.26 16 5 C -0.02 -0.25 9.54 -39.60 -0.38 -0.63 16 6 C -0.13 -2.21 5.75 -106.64 -0.61 -2.83 16 7 C 0.17 2.97 6.60 -84.90 -0.56 2.41 16 8 C -0.16 -2.43 9.95 -38.98 -0.39 -2.82 16 9 N -0.50 -8.40 10.33 -11.11 -0.11 -8.52 16 10 C 0.15 2.33 11.13 -17.58 -0.20 2.13 16 11 C -0.24 -3.98 8.79 -39.24 -0.34 -4.33 16 12 C 0.20 3.64 4.67 -83.39 -0.39 3.25 16 13 N -0.51 -10.17 3.92 -179.89 -0.70 -10.87 16 14 C 0.04 0.77 9.09 60.07 0.55 1.32 16 15 C 0.17 3.94 3.38 -4.97 -0.02 3.92 16 16 C -0.52 -13.89 9.07 -34.44 -0.31 -14.20 16 17 H 0.08 2.43 7.35 -52.48 -0.39 2.04 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 20 Si 0.87 20.85 27.47 -169.99 -4.67 16.18 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 24 H 0.06 0.41 7.64 -51.93 -0.40 0.02 16 25 H 0.06 0.44 7.64 -51.93 -0.40 0.04 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.13 1.42 6.23 -52.49 -0.33 1.10 16 28 H 0.15 2.44 7.58 -52.49 -0.40 2.05 16 29 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 2.08 7.28 -52.49 -0.38 1.70 16 32 H 0.09 1.74 6.86 -51.93 -0.36 1.39 16 33 H 0.02 0.41 7.53 -51.93 -0.39 0.02 16 34 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 35 H 0.00 -0.03 6.59 -51.93 -0.34 -0.37 16 36 H 0.03 0.63 7.48 -51.93 -0.39 0.24 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -30.73 308.62 -7.26 -38.00 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.62 Total: 0.40 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.38 Total: -10.07 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.05 Total: -45.01 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.20 Total: -4.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.73 -7.26 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770443491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.780 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds