Wall clock time and date at job start Mon Mar 30 2020 01:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35834 * 117.00123 * 2 1 4 4 C 1.39815 * 119.61836 * 0.02562 * 3 2 1 5 5 C 1.36080 * 120.76286 * 180.02562 * 4 3 2 6 6 C 1.40241 * 119.85114 * 359.97438 * 5 4 3 7 7 C 1.41588 * 119.87844 * 0.23836 * 6 5 4 8 8 C 1.37640 * 119.62169 * 180.50946 * 3 2 1 9 9 N 1.33828 * 119.97106 * 180.28770 * 7 6 5 10 10 C 1.31325 * 121.66829 * 359.75322 * 9 7 6 11 11 C 1.38734 * 121.84217 * 359.97438 * 10 9 7 12 12 C 1.38676 * 119.70641 * 0.02562 * 11 10 9 13 13 N 1.38650 * 121.03260 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00230 * 296.04321 * 13 12 11 15 15 C 1.46906 * 111.00229 * 59.99775 * 13 12 11 16 16 C 1.50696 * 109.47351 * 169.99871 * 15 13 12 17 17 H 1.08007 * 119.99780 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00506 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00248 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99357 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46811 * 90.00524 * 20 18 16 22 22 H 1.48502 * 109.46643 * 209.99901 * 20 18 16 23 23 H 1.48499 * 109.47300 * 329.99977 * 20 18 16 24 24 H 1.09000 * 109.46819 * 299.99706 * 1 2 3 25 25 H 1.08997 * 109.47012 * 59.99610 * 1 2 3 26 26 H 1.08993 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.61876 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.07495 * 179.97438 * 5 4 3 29 29 H 1.08002 * 120.18733 * 359.49032 * 8 3 2 30 30 H 1.07995 * 119.07884 * 179.97438 * 10 9 7 31 31 H 1.07999 * 120.14210 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.47401 * 183.95511 * 14 13 12 33 33 H 1.09001 * 109.46874 * 63.95523 * 14 13 12 34 34 H 1.09004 * 109.46970 * 303.95657 * 14 13 12 35 35 H 1.08997 * 109.46995 * 289.99851 * 15 13 12 36 36 H 1.09001 * 109.46848 * 49.99857 * 15 13 12 37 37 H 0.96999 * 119.99895 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2765 2.3778 0.0005 5 6 1.8699 3.6023 0.0000 6 6 3.2690 3.7000 -0.0005 7 6 4.0581 2.5245 -0.0056 8 6 3.4206 1.2732 -0.0106 9 7 5.3933 2.6155 -0.0003 10 6 6.0051 3.7775 0.0048 11 6 5.3032 4.9742 0.0045 12 6 3.9166 4.9577 -0.0008 13 7 3.1877 6.1371 -0.0007 14 6 3.4184 6.8986 1.2342 15 6 3.4988 6.9484 -1.1853 16 6 2.5222 8.0921 -1.2815 17 1 1.7481 8.2053 -0.5369 18 6 2.6168 8.9941 -2.3200 19 7 1.7649 9.9924 -2.4037 20 14 3.9562 8.7987 -3.6075 21 1 3.4548 7.9504 -4.7185 22 1 4.3334 10.1343 -4.1358 23 1 5.1449 8.1561 -2.9916 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.1988 2.3069 0.0014 28 1 1.2650 4.4970 0.0000 29 1 4.0059 0.3655 -0.0106 30 1 7.0847 3.8022 0.0094 31 1 5.8345 5.9145 0.0084 32 1 2.7820 7.7835 1.2397 33 1 4.4640 7.2026 1.2835 34 1 3.1804 6.2745 2.0956 35 1 4.5117 7.3418 -1.1004 36 1 3.4230 6.3297 -2.0795 37 1 1.8313 10.6267 -3.1345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770443491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:54 Heat of formation + Delta-G solvation = 13.071304 kcal Electronic energy + Delta-G solvation = -20354.203739 eV Core-core repulsion = 17289.493830 eV Total energy + Delta-G solvation = -3064.709908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.05902 -40.40192 -38.59525 -36.92963 -34.85219 -33.08023 -31.21396 -30.85778 -29.82463 -28.01909 -27.04098 -24.91764 -24.29602 -23.44795 -21.67137 -19.62369 -19.15296 -18.59554 -17.94287 -17.08809 -16.77800 -16.64349 -16.41860 -15.72706 -15.64232 -15.01092 -14.93936 -14.72416 -14.64743 -14.41215 -14.19956 -13.49014 -13.25846 -13.06835 -12.96234 -12.82415 -12.59286 -12.41085 -12.07513 -11.96274 -11.89106 -11.56547 -10.91610 -10.82647 -10.56720 -9.56279 -9.39895 -8.93055 -8.31625 -6.35768 -0.65969 -0.15888 0.92644 1.32887 1.34372 1.43396 1.90165 2.23071 2.30600 2.84264 3.02056 3.07032 3.49622 3.66895 3.88715 3.91406 3.96830 4.06168 4.27685 4.41895 4.43258 4.47753 4.54099 4.59830 4.73170 4.74101 4.79916 4.87280 4.98137 5.05610 5.08444 5.21507 5.36980 5.37683 5.51194 5.64804 5.84428 6.18905 6.33978 6.59348 6.70193 6.92246 7.27544 8.84045 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.005201 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.220970 B = 5382.615617 C = 6001.146018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.155 3.845 4 C -0.197 4.197 5 C -0.035 4.035 6 C -0.141 4.141 7 C 0.159 3.841 8 C -0.170 4.170 9 N -0.511 5.511 10 C 0.158 3.842 11 C -0.239 4.239 12 C 0.170 3.830 13 N -0.515 5.515 14 C 0.047 3.953 15 C 0.183 3.817 16 C -0.516 4.516 17 H 0.048 0.952 18 C 0.018 3.982 19 N -0.941 5.941 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.250 1.250 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.125 0.875 27 H 0.161 0.839 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.193 0.807 31 H 0.142 0.858 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.003 0.997 36 H 0.018 0.982 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -17.138 5.765 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.107 3.893 4 C -0.215 4.215 5 C -0.054 4.054 6 C -0.144 4.144 7 C 0.037 3.963 8 C -0.190 4.190 9 N -0.221 5.221 10 C -0.013 4.013 11 C -0.261 4.261 12 C 0.067 3.933 13 N -0.236 5.236 14 C -0.099 4.099 15 C 0.058 3.942 16 C -0.555 4.555 17 H 0.067 0.933 18 C -0.180 4.180 19 N -0.581 5.581 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.173 1.173 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.143 0.857 27 H 0.179 0.821 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.210 0.790 31 H 0.160 0.840 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.021 0.979 36 H 0.036 0.964 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.247 -18.119 5.654 19.114 hybrid contribution 0.349 1.747 -0.713 1.919 sum 2.596 -16.372 4.941 17.297 Atomic orbital electron populations 1.23448 0.75986 1.05988 1.02591 1.86055 1.23824 1.25909 1.88053 1.18908 0.91692 0.84822 0.93871 1.21342 1.01811 0.91138 1.07197 1.20978 0.93015 0.98488 0.92937 1.18922 0.95631 0.92587 1.07289 1.18580 0.89455 0.91985 0.96265 1.20003 0.91725 0.96595 1.10664 1.68095 1.09007 1.28873 1.16165 1.23219 1.01786 0.86080 0.90169 1.22850 0.94982 1.01369 1.06908 1.19495 0.91075 0.91360 0.91350 1.59121 1.55670 1.04147 1.04615 1.22269 1.00120 0.97964 0.89516 1.19985 0.94882 0.91439 0.87919 1.21123 1.14539 1.08832 1.10962 0.93333 1.25678 0.98085 0.94531 0.99739 1.70010 1.38577 1.16058 1.33439 0.85891 0.80493 0.78035 0.79665 1.19629 1.20416 1.17330 0.91319 0.91642 0.85733 0.82115 0.84447 0.83702 0.78994 0.84015 0.91383 0.94657 0.90883 0.97887 0.96399 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.80 113.37 1.11 1.29 16 2 O -0.33 -7.26 10.48 -91.68 -0.96 -8.22 16 3 C 0.15 4.09 6.67 22.51 0.15 4.24 16 4 C -0.20 -5.06 8.94 22.15 0.20 -4.86 16 5 C -0.04 -1.12 9.54 22.25 0.21 -0.91 16 6 C -0.14 -4.91 5.75 -21.17 -0.12 -5.03 16 7 C 0.16 5.26 6.60 40.20 0.27 5.53 16 8 C -0.17 -5.03 9.95 22.66 0.23 -4.80 16 9 N -0.51 -16.27 10.33 -189.07 -1.95 -18.22 16 10 C 0.16 4.39 11.13 84.89 0.94 5.33 16 11 C -0.24 -7.48 8.79 22.49 0.20 -7.28 16 12 C 0.17 6.16 4.67 38.96 0.18 6.35 16 13 N -0.51 -20.72 3.92 -723.05 -2.83 -23.55 16 14 C 0.05 1.70 9.09 127.69 1.16 2.86 16 15 C 0.18 8.49 3.38 85.55 0.29 8.78 16 16 C -0.52 -28.51 9.07 25.60 0.23 -28.28 16 17 H 0.05 2.95 7.35 -2.91 -0.02 2.93 16 18 C 0.02 1.02 5.47 84.66 0.46 1.48 16 19 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16 20 Si 0.94 42.80 27.47 68.60 1.88 44.68 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 24 H 0.07 0.77 7.64 -2.39 -0.02 0.75 16 25 H 0.06 0.79 7.64 -2.39 -0.02 0.77 16 26 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.16 3.06 6.23 -2.91 -0.02 3.04 16 28 H 0.14 4.61 7.58 -2.91 -0.02 4.59 16 29 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 30 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.14 4.12 7.28 -2.91 -0.02 4.10 16 32 H 0.07 2.72 6.86 -2.39 -0.02 2.70 16 33 H 0.03 1.17 7.53 -2.39 -0.02 1.15 16 34 H 0.07 2.28 8.12 -2.38 -0.02 2.26 16 35 H 0.00 0.16 6.59 -2.39 -0.02 0.14 16 36 H 0.02 0.86 7.48 -2.39 -0.02 0.84 16 37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -67.09 308.62 2.97 -64.12 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.02 Total: 13.03 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.51 Total: -15.30 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -4.49 Total: -98.31 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.96 Total: -8.22 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -67.09 2.97 -64.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770443491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.192 kcal (2) G-P(sol) polarization free energy of solvation -67.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds