Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46888 * 2 1 4 4 C 1.46504 * 120.00367 * 270.00286 * 3 2 1 5 5 C 1.47194 * 109.47030 * 270.00114 * 4 3 2 6 6 N 4.13049 * 140.68124 * 309.42828 * 2 1 3 7 7 C 1.34774 * 119.99540 * 90.00279 * 3 2 1 8 8 O 1.21282 * 119.99857 * 180.02562 * 7 3 2 9 9 C 1.50702 * 120.00354 * 359.97438 * 7 3 2 10 10 C 1.50702 * 109.47130 * 180.02562 * 9 7 3 11 11 C 1.37640 * 120.12330 * 264.99878 * 10 9 7 12 12 C 1.38618 * 120.24318 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.50294 * 0.02562 * 12 11 10 14 14 C 1.37595 * 120.24789 * 0.02831 * 13 12 11 15 15 C 1.40693 * 120.13010 * 84.72875 * 10 9 7 16 16 C 1.41402 * 120.24207 * 359.97438 * 15 10 9 17 17 H 1.07995 * 120.00067 * 333.89698 * 16 15 10 18 18 C 1.39952 * 119.99755 * 153.88838 * 16 15 10 19 19 N 1.30816 * 119.99844 * 343.72791 * 18 16 15 20 20 Si 1.86796 * 119.99737 * 163.72696 * 18 16 15 21 21 H 1.48502 * 109.47232 * 59.99963 * 20 18 16 22 22 H 1.48498 * 109.47040 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47364 * 300.00304 * 20 18 16 24 24 H 1.08997 * 109.47543 * 299.99398 * 1 2 3 25 25 H 1.09002 * 109.47734 * 60.00128 * 1 2 3 26 26 H 1.09008 * 109.46890 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46823 * 240.00460 * 2 1 3 28 28 H 1.08994 * 109.47350 * 120.00632 * 2 1 3 29 29 H 1.09003 * 109.46553 * 30.00054 * 4 3 2 30 30 H 1.09001 * 109.46950 * 149.99780 * 4 3 2 31 31 H 1.09005 * 109.46691 * 300.00145 * 9 7 3 32 32 H 1.08995 * 109.47072 * 59.99739 * 9 7 3 33 33 H 1.07990 * 119.87807 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.74890 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.87341 * 179.97438 * 13 12 11 36 36 H 1.07998 * 120.12931 * 179.97438 * 14 13 12 37 37 H 0.97004 * 120.00045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6525 1.8407 -1.6937 6 7 4.7255 1.6622 -2.0216 7 6 2.2429 2.0165 1.1672 8 8 2.6467 3.1601 1.1673 9 6 1.9913 1.3062 2.4723 10 6 2.3172 2.2296 3.6178 11 6 3.5585 2.1833 4.2108 12 6 3.8611 3.0319 5.2642 13 6 2.9196 3.9354 5.7330 14 6 1.6720 3.9984 5.1560 15 6 1.3559 3.1463 4.0815 16 6 0.0796 3.2072 3.4759 17 1 -0.0459 2.8992 2.4485 18 6 -1.0211 3.6665 4.2082 19 7 -0.9556 3.7365 5.5128 20 14 -2.5837 4.1795 3.3225 21 1 -3.1192 3.0263 2.5552 22 1 -3.5929 4.6245 4.3168 23 1 -2.2812 5.2959 2.3912 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5815 1.6878 -2.0283 30 1 2.0953 3.1412 -1.1383 31 1 0.9431 1.0124 2.5298 32 1 2.6211 0.4185 2.5302 33 1 4.2996 1.4838 3.8534 34 1 4.8377 2.9890 5.7233 35 1 3.1661 4.5915 6.5546 36 1 0.9400 4.7025 5.5230 37 1 -1.7184 4.0552 6.0204 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776859770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -9.289637 kcal Electronic energy + Delta-G solvation = -20635.389971 eV Core-core repulsion = 17569.710420 eV Total energy + Delta-G solvation = -3065.679551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11386 -39.24769 -37.75657 -36.64325 -35.45879 -33.54007 -31.81100 -31.31786 -29.65807 -27.72766 -26.64976 -24.15992 -22.81014 -21.99200 -20.31256 -18.99821 -18.64933 -17.92625 -17.55398 -17.00507 -16.30215 -16.03893 -15.42942 -15.15976 -15.08082 -14.65661 -14.62665 -14.33388 -13.94854 -13.81422 -13.51753 -13.35167 -13.27989 -12.89418 -12.77578 -12.70104 -12.63462 -12.44091 -12.30945 -12.08040 -11.81639 -11.28921 -11.16958 -10.97566 -10.74780 -9.89210 -9.20580 -9.14107 -8.54615 -6.24548 1.00991 1.13894 1.40091 1.41730 1.51901 1.59429 1.72923 1.76690 2.24744 2.43115 2.83111 3.09137 3.69306 3.99993 4.18579 4.27714 4.39240 4.43764 4.52742 4.59276 4.64345 4.71355 4.76580 4.82394 4.98670 5.08394 5.16731 5.24236 5.39097 5.54976 5.57541 5.63097 5.80292 6.06081 6.19068 6.23765 6.37340 6.44674 6.49302 6.76867 7.03342 7.14792 7.31084 8.41742 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.007126 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.313324 B = 3928.551100 C = 5125.651002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.614 5.614 4 C 0.207 3.793 5 C 0.219 3.781 6 N -0.483 5.483 7 C 0.520 3.480 8 O -0.564 6.564 9 C -0.066 4.066 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.247 4.247 13 C -0.118 4.118 14 C -0.194 4.194 15 C 0.098 3.902 16 C -0.477 4.477 17 H 0.079 0.921 18 C 0.036 3.964 19 N -0.828 5.828 20 Si 0.970 3.030 21 H -0.247 1.247 22 H -0.273 1.273 23 H -0.269 1.269 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.177 0.823 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 -8.475 -11.080 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.349 5.349 4 C 0.081 3.919 5 C -0.100 4.100 6 N -0.162 5.162 7 C 0.310 3.690 8 O -0.441 6.441 9 C -0.105 4.105 10 C -0.191 4.191 11 C -0.113 4.113 12 C -0.266 4.266 13 C -0.136 4.136 14 C -0.213 4.213 15 C 0.096 3.904 16 C -0.506 4.506 17 H 0.097 0.903 18 C -0.179 4.179 19 N -0.454 5.454 20 Si 0.792 3.208 21 H -0.170 1.170 22 H -0.198 1.198 23 H -0.194 1.194 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.104 0.896 29 H 0.194 0.806 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.784 -8.101 -11.341 14.051 hybrid contribution -0.785 0.750 0.425 1.166 sum -2.569 -7.351 -10.916 13.409 Atomic orbital electron populations 1.22224 0.94668 1.03557 1.02576 1.21940 0.95378 0.79724 1.05140 1.48143 1.66600 1.16228 1.03920 1.19249 0.83446 1.01779 0.87437 1.30486 0.95982 0.91606 0.91951 1.81173 1.13760 1.10648 1.10641 1.21263 0.75244 0.86220 0.86235 1.90689 1.45949 1.19789 1.87685 1.20317 1.04255 0.97301 0.88623 1.19566 0.95916 1.01681 1.01938 1.20720 0.95502 0.98723 0.96319 1.20675 0.99560 1.03276 1.03074 1.20929 0.94296 0.98980 0.99397 1.21317 0.95933 1.02344 1.01707 1.17732 0.92993 0.88789 0.90897 1.19619 0.92355 1.39688 0.98984 0.90305 1.26705 1.03667 0.92433 0.95054 1.69886 1.32968 1.34612 1.07928 0.85422 0.76557 0.79953 0.78909 1.17042 1.19776 1.19387 0.94076 0.90965 0.89408 0.87376 0.89578 0.80596 0.86170 0.87703 0.87596 0.87173 0.87171 0.87924 0.88470 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 71.98 0.74 -1.72 16 2 C 0.10 1.50 5.93 86.38 0.51 2.01 16 3 N -0.61 -14.28 2.43 -832.36 -2.02 -16.30 16 4 C 0.21 3.78 5.88 84.57 0.50 4.28 16 5 C 0.22 5.42 15.76 89.44 1.41 6.83 16 6 N -0.48 -14.99 18.54 20.00 0.37 -14.62 16 7 C 0.52 18.26 7.28 87.66 0.64 18.90 16 8 O -0.56 -25.54 15.61 -3.04 -0.05 -25.59 16 9 C -0.07 -2.36 3.73 29.10 0.11 -2.26 16 10 C -0.19 -8.90 4.43 -19.41 -0.09 -8.99 16 11 C -0.09 -4.29 9.66 22.22 0.21 -4.08 16 12 C -0.25 -11.43 10.05 22.46 0.23 -11.20 16 13 C -0.12 -5.84 10.02 22.22 0.22 -5.62 16 14 C -0.19 -10.62 8.69 22.73 0.20 -10.42 16 15 C 0.10 5.25 5.56 -21.29 -0.12 5.13 16 16 C -0.48 -24.51 8.14 23.46 0.19 -24.32 16 17 H 0.08 3.83 6.67 -2.91 -0.02 3.81 16 18 C 0.04 1.76 5.16 85.26 0.44 2.20 16 19 N -0.83 -42.89 10.95 21.83 0.24 -42.65 16 20 Si 0.97 37.00 29.59 68.60 2.03 39.03 16 21 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 22 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 24 H 0.04 0.85 7.22 -2.39 -0.02 0.83 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.11 1.01 8.07 -2.38 -0.02 0.99 16 28 H 0.09 1.32 6.44 -2.39 -0.02 1.31 16 29 H 0.18 1.24 8.07 -2.39 -0.02 1.22 16 30 H 0.12 2.52 7.42 -2.39 -0.02 2.50 16 31 H 0.10 3.67 6.12 -2.38 -0.01 3.65 16 32 H 0.11 3.10 7.31 -2.39 -0.02 3.08 16 33 H 0.11 4.30 8.06 -2.92 -0.02 4.28 16 34 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 36 H 0.10 5.58 6.20 -2.91 -0.02 5.56 16 37 H 0.28 13.49 8.30 -92.71 -0.77 12.72 16 Total: -1.00 -72.55 321.28 6.84 -65.70 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 1.08 Total: 23.68 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 5.19 Total: -29.26 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.41 Total: -73.58 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -72.55 6.84 -65.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776859770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.415 kcal (2) G-P(sol) polarization free energy of solvation -72.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds