Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99673 * 2 1 4 4 C 1.52991 * 109.47266 * 269.99674 * 3 2 1 5 5 C 1.47196 * 109.47144 * 180.02562 * 4 3 2 6 6 N 4.80463 * 118.48328 * 340.02876 * 2 1 3 7 7 C 1.34773 * 120.00061 * 179.97438 * 2 1 3 8 8 O 1.21282 * 119.99503 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 H 1.08995 * 109.47181 * 269.99950 * 1 2 3 25 25 H 1.09006 * 109.47212 * 30.00135 * 1 2 3 26 26 H 1.09002 * 109.46759 * 149.99698 * 1 2 3 27 27 H 1.09005 * 109.47035 * 30.00183 * 3 2 1 28 28 H 1.08998 * 109.46561 * 149.99684 * 3 2 1 29 29 H 1.08996 * 109.47676 * 300.00395 * 4 3 2 30 30 H 1.09002 * 109.46986 * 60.00109 * 4 3 2 31 31 H 1.09001 * 109.46892 * 59.99768 * 9 7 2 32 32 H 1.08991 * 109.47294 * 299.99778 * 9 7 2 33 33 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 34 34 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 35 35 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 36 36 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 37 37 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.1890 2.9850 -1.4424 6 7 3.7563 3.9691 -1.4424 7 6 2.1389 -1.1672 0.0005 8 8 3.3517 -1.1670 0.0001 9 6 1.3855 -2.4722 0.0005 10 6 2.3648 -3.6177 0.0005 11 6 2.7397 -4.2061 -1.1860 12 6 3.6353 -5.2641 -1.1883 13 6 4.1685 -5.7373 0.0010 14 6 3.8127 -5.1603 1.1984 15 6 2.9043 -4.0855 1.2127 16 6 2.5319 -3.4842 2.4372 17 1 2.1937 -2.4587 2.4542 18 6 2.6018 -4.2177 3.6268 19 7 2.5176 -5.5230 3.5964 20 14 2.8153 -3.3334 5.2583 21 1 2.8596 -4.3292 6.3591 22 1 4.0821 -2.5589 5.2395 23 1 1.6731 -2.4090 5.4734 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6083 2.0285 0.5139 28 1 3.1498 1.1385 0.5139 29 1 3.0416 0.9509 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 0.7591 -2.5301 -0.8897 32 1 0.7585 -2.5298 0.8902 33 1 2.3311 -3.8451 -2.1182 34 1 3.9201 -5.7231 -2.1234 35 1 4.8657 -6.5620 -0.0126 36 1 4.2295 -5.5303 2.1234 37 1 2.3225 -5.9770 2.7618 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777367829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -18.133131 kcal Electronic energy + Delta-G solvation = -20309.604739 eV Core-core repulsion = 17243.541705 eV Total energy + Delta-G solvation = -3066.063034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99021 -39.39625 -37.92435 -36.50710 -35.69452 -33.78203 -32.38279 -31.05355 -28.62032 -27.53979 -26.82152 -24.89214 -22.78083 -21.92838 -20.08403 -19.44705 -18.69259 -17.89017 -17.07636 -16.72595 -16.52741 -15.86716 -15.80767 -15.74605 -15.36940 -14.68586 -14.29333 -14.18300 -13.89519 -13.76820 -13.61702 -13.53044 -13.44572 -12.94379 -12.93725 -12.88501 -12.58513 -12.52161 -12.20614 -11.97308 -11.89202 -11.41450 -11.16919 -10.80456 -10.68700 -9.60442 -9.39267 -9.37729 -9.00775 -6.34964 0.95946 1.03513 1.49157 1.61642 1.64462 1.77140 1.77830 1.87033 2.19456 2.33659 2.75522 3.14767 3.60307 3.92971 4.07318 4.17748 4.33910 4.38315 4.48029 4.51113 4.55818 4.63675 4.77262 4.85004 4.87654 5.01576 5.05059 5.13248 5.15448 5.37897 5.54751 5.68870 5.84510 5.88830 6.04144 6.10437 6.34383 6.47126 6.52480 6.54453 6.91041 7.07607 7.41129 8.12971 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.005772 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.696837 B = 4850.075680 C = 5827.960618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.617 5.617 3 C 0.118 3.882 4 C -0.031 4.031 5 C 0.241 3.759 6 N -0.495 5.495 7 C 0.516 3.484 8 O -0.573 6.573 9 C -0.066 4.066 10 C -0.189 4.189 11 C -0.079 4.079 12 C -0.251 4.251 13 C -0.100 4.100 14 C -0.247 4.247 15 C 0.085 3.915 16 C -0.540 4.540 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.822 5.822 20 Si 1.105 2.895 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.250 1.250 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.153 0.847 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 9.775 -6.690 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.351 5.351 3 C -0.006 4.006 4 C -0.072 4.072 5 C -0.076 4.076 6 N -0.173 5.173 7 C 0.305 3.695 8 O -0.451 6.451 9 C -0.105 4.105 10 C -0.190 4.190 11 C -0.097 4.097 12 C -0.270 4.270 13 C -0.118 4.118 14 C -0.267 4.267 15 C 0.083 3.917 16 C -0.568 4.568 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.446 5.446 20 Si 0.923 3.077 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.174 1.174 24 H 0.077 0.923 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.170 0.830 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.140 10.936 -5.065 14.543 hybrid contribution 0.211 -0.610 -1.485 1.619 sum -7.929 10.326 -6.550 14.574 Atomic orbital electron populations 1.22157 0.76493 1.05508 1.03113 1.47906 1.08598 1.04376 1.74234 1.21294 0.98411 0.85863 0.95034 1.19773 1.01356 0.86044 1.00055 1.29394 0.92351 0.94160 0.91689 1.81253 1.11600 1.14347 1.10102 1.21156 0.87682 0.86256 0.74376 1.90681 1.16413 1.87814 1.50179 1.20295 0.96917 0.88811 1.04513 1.19584 1.04241 1.02160 0.93041 1.20817 0.96731 0.95474 0.96657 1.20717 1.06346 1.03159 0.96774 1.20885 0.98944 0.98769 0.93209 1.21140 1.04659 1.04235 0.96617 1.17783 0.89357 0.90907 0.93669 1.20531 1.42660 1.00524 0.93128 0.91201 1.28151 0.90240 0.95230 1.07469 1.70553 1.31102 1.10382 1.32561 0.83157 0.78673 0.75274 0.70567 1.19662 1.20333 1.17404 0.92284 0.87254 0.89796 0.86702 0.92458 0.87756 0.82964 0.86439 0.88880 0.85874 0.86474 0.87655 0.90194 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.24 127.77 1.31 2.15 16 2 N -0.62 -13.51 2.87 -846.76 -2.43 -15.94 16 3 C 0.12 2.21 5.36 86.37 0.46 2.68 16 4 C -0.03 -0.45 6.03 28.78 0.17 -0.27 16 5 C 0.24 4.95 15.43 89.44 1.38 6.33 16 6 N -0.49 -13.51 18.54 20.00 0.37 -13.14 16 7 C 0.52 17.45 7.31 87.66 0.64 18.09 16 8 O -0.57 -25.57 15.61 -3.04 -0.05 -25.62 16 9 C -0.07 -2.26 3.73 29.10 0.11 -2.15 16 10 C -0.19 -8.53 4.43 -19.40 -0.09 -8.61 16 11 C -0.08 -3.30 9.66 22.22 0.21 -3.09 16 12 C -0.25 -10.87 10.05 22.46 0.23 -10.64 16 13 C -0.10 -4.76 10.02 22.22 0.22 -4.54 16 14 C -0.25 -13.32 7.95 22.73 0.18 -13.14 16 15 C 0.09 4.53 5.30 -21.29 -0.11 4.41 16 16 C -0.54 -28.51 8.08 23.46 0.19 -28.32 16 17 H 0.07 3.59 6.73 -2.91 -0.02 3.57 16 18 C 0.01 0.27 4.94 85.25 0.42 0.69 16 19 N -0.82 -44.72 12.31 21.82 0.27 -44.45 16 20 Si 1.10 44.14 30.00 68.60 2.06 46.20 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.11 0.50 8.07 -2.38 -0.02 0.49 16 26 H 0.08 0.94 6.44 -2.39 -0.02 0.93 16 27 H 0.11 1.41 8.07 -2.38 -0.02 1.39 16 28 H 0.06 1.51 7.42 -2.39 -0.02 1.49 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.15 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.12 2.98 7.31 -2.39 -0.02 2.96 16 32 H 0.09 3.25 7.02 -2.39 -0.02 3.24 16 33 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.08 4.57 6.49 -2.91 -0.02 4.55 16 37 H 0.28 16.02 6.68 -92.71 -0.62 15.40 16 Total: -1.00 -74.29 322.04 6.78 -67.51 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.23 Total: 21.86 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 5.33 Total: -36.42 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.79 Total: -73.53 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.06 Total: 46.20 kcal Total: -74.29 6.78 -67.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777367829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.380 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds