Wall clock time and date at job start Mon Mar 30 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47259 * 2 1 4 4 C 1.52993 * 109.47308 * 239.99709 * 2 1 3 5 5 C 1.47204 * 109.47045 * 175.00364 * 4 2 1 6 6 N 3.43543 * 154.82941 * 248.42865 * 2 1 3 7 7 N 1.46503 * 109.46586 * 119.99631 * 2 1 3 8 8 C 1.34778 * 119.99856 * 274.99928 * 7 2 1 9 9 O 1.21279 * 120.00169 * 0.02562 * 8 7 2 10 10 C 1.50698 * 119.99684 * 180.02562 * 8 7 2 11 11 C 1.50702 * 109.47043 * 179.97438 * 10 8 7 12 12 C 1.37634 * 120.12965 * 264.99817 * 11 10 8 13 13 C 1.38616 * 120.24955 * 179.97438 * 12 11 10 14 14 C 1.38658 * 120.50095 * 0.02562 * 13 12 11 15 15 C 1.37602 * 120.24772 * 0.02562 * 14 13 12 16 16 C 1.40699 * 120.12616 * 84.72832 * 11 10 8 17 17 C 1.41398 * 120.24471 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99954 * 333.90712 * 17 16 11 19 19 C 1.39942 * 120.00052 * 153.90018 * 17 16 11 20 20 N 1.30826 * 120.00383 * 343.71254 * 19 17 16 21 21 Si 1.86805 * 119.99985 * 163.70913 * 19 17 16 22 22 H 1.48492 * 109.46850 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47048 * 120.00257 * 21 19 17 24 24 H 1.48504 * 109.47102 * 240.00044 * 21 19 17 25 25 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47360 * 300.00532 * 1 2 3 27 27 H 1.09002 * 109.46849 * 60.00256 * 1 2 3 28 28 H 1.08996 * 109.47360 * 55.00247 * 4 2 1 29 29 H 1.09004 * 109.47246 * 294.99737 * 4 2 1 30 30 H 0.97003 * 119.99874 * 95.00570 * 7 2 1 31 31 H 1.08999 * 109.47332 * 299.99764 * 10 8 7 32 32 H 1.09005 * 109.47396 * 60.00168 * 10 8 7 33 33 H 1.07995 * 119.87571 * 0.02562 * 12 11 10 34 34 H 1.08000 * 119.75160 * 180.02562 * 13 12 11 35 35 H 1.08000 * 119.87576 * 179.97438 * 14 13 12 36 36 H 1.08004 * 120.12565 * 179.97438 * 15 14 13 37 37 H 0.96998 * 120.00415 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5071 -0.6174 -1.3110 6 7 4.6392 -0.5372 -1.3588 7 7 2.0182 -0.6906 1.1963 8 6 2.1469 -0.0181 2.3572 9 8 1.8581 1.1585 2.4117 10 6 2.6496 -0.7283 3.5876 11 6 2.7008 0.2402 4.7410 12 6 3.8734 0.8950 5.0418 13 6 3.9231 1.7868 6.1018 14 6 2.7952 2.0294 6.8709 15 6 1.6124 1.3852 6.5891 16 6 1.5485 0.4828 5.5111 17 6 0.3366 -0.1795 5.2076 18 1 0.1459 -0.5223 4.2013 19 6 -0.6156 -0.3908 6.2110 20 7 -0.2767 -0.2754 7.4693 21 14 -2.3709 -0.8377 5.7538 22 1 -2.4952 -0.9059 4.2757 23 1 -2.7144 -2.1579 6.3405 24 1 -3.2982 0.1951 6.2820 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6055 -0.2618 -2.1369 29 1 1.7517 -1.7716 -1.2054 30 1 2.2490 -1.6318 1.1528 31 1 1.9774 -1.5506 3.8327 32 1 3.6490 -1.1202 3.3981 33 1 4.7579 0.7140 4.4492 34 1 4.8474 2.2966 6.3305 35 1 2.8454 2.7259 7.6948 36 1 0.7351 1.5753 7.1897 37 1 -0.9368 -0.4215 8.1649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777375794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:03 Heat of formation + Delta-G solvation = -5.711276 kcal Electronic energy + Delta-G solvation = -20283.887255 eV Core-core repulsion = 17218.362873 eV Total energy + Delta-G solvation = -3065.524382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.50632 -37.64415 -36.86992 -35.26687 -33.59150 -32.05969 -31.01302 -29.41412 -28.30231 -26.71341 -24.97538 -22.11391 -20.90001 -20.40651 -19.39239 -17.94338 -17.13724 -16.45609 -16.15327 -15.40972 -14.70457 -14.55843 -14.22180 -13.94060 -13.64990 -13.50528 -13.18773 -13.09853 -12.57333 -12.45331 -12.27746 -11.88332 -11.80791 -11.62492 -11.53726 -11.16844 -11.07583 -10.96417 -10.93640 -10.64903 -10.36697 -9.45403 -9.34556 -9.16996 -9.13094 -8.81530 -7.27800 -7.26048 -6.70888 -4.31494 2.61931 2.64974 2.79795 2.99204 3.08278 3.12651 3.28754 3.33469 3.57550 3.80334 3.94978 4.59415 4.69008 4.89605 5.11591 5.29262 5.41019 5.50171 5.68435 5.81730 5.95643 6.05602 6.19514 6.28541 6.32489 6.45946 6.54705 6.75262 6.83208 7.11441 7.32983 7.43050 7.45607 7.67087 7.87013 7.97541 8.10396 8.16542 8.34637 8.67846 8.85484 8.94707 9.04813 10.23345 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.006183 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.030098 B = 4527.288518 C = 5920.063351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.093 0.907 4 C -0.034 4.034 5 C 0.204 3.796 6 N -0.433 5.433 7 N -0.745 5.745 8 C 0.518 3.482 9 O -0.517 6.517 10 C -0.071 4.071 11 C -0.181 4.181 12 C -0.082 4.082 13 C -0.239 4.239 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.129 3.871 17 C -0.455 4.455 18 H 0.075 0.925 19 C 0.076 3.924 20 N -0.796 5.796 21 Si 0.903 3.097 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.273 1.273 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.396 0.604 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 -4.559 -12.661 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.074 4.074 5 C -0.114 4.114 6 N -0.109 5.109 7 N -0.401 5.401 8 C 0.306 3.694 9 O -0.391 6.391 10 C -0.111 4.111 11 C -0.182 4.182 12 C -0.100 4.100 13 C -0.258 4.258 14 C -0.126 4.126 15 C -0.178 4.178 16 C 0.126 3.874 17 C -0.485 4.485 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.422 5.422 21 Si 0.727 3.273 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.198 1.198 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.229 0.771 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.403 -3.584 -12.443 12.955 hybrid contribution -1.148 -0.692 -0.085 1.343 sum -1.551 -4.276 -12.528 13.328 Atomic orbital electron populations 1.22182 0.94029 1.02635 1.03338 1.20780 0.94732 0.97725 0.82739 0.88906 1.19707 0.82168 1.04586 1.00970 1.29108 0.95273 0.93616 0.93392 1.81236 1.13027 1.08306 1.08378 1.46276 1.70149 1.13856 1.09790 1.21229 0.76636 0.87669 0.83915 1.90681 1.47849 1.16167 1.84358 1.20270 1.00889 0.98928 0.91011 1.19053 0.94175 1.04195 1.00822 1.20309 0.95921 0.97009 0.96785 1.20307 0.97653 1.06386 1.01476 1.20679 0.94143 0.99426 0.98335 1.21298 0.96935 0.98612 1.01002 1.17340 0.91059 0.89004 0.89951 1.19488 0.99990 1.33031 0.96017 0.90706 1.25883 1.00476 0.93268 0.94457 1.69831 1.35427 1.36526 1.00390 0.86353 0.82299 0.78547 0.80055 1.18492 1.20106 1.19782 0.92063 0.90857 0.91627 0.86014 0.86871 0.77051 0.88490 0.90754 0.89857 0.89714 0.89611 0.86525 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.24 16 2 C 0.15 1.52 2.55 -67.93 -0.17 1.35 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.03 -0.21 5.25 -29.52 -0.16 -0.37 16 5 C 0.20 2.15 15.14 -20.76 -0.31 1.84 16 6 N -0.43 -6.12 18.54 42.15 0.78 -5.34 16 7 N -0.75 -9.62 4.78 -53.81 -0.26 -9.88 16 8 C 0.52 9.62 7.40 -10.99 -0.08 9.54 16 9 O -0.52 -11.92 15.70 5.56 0.09 -11.83 16 10 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 11 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 12 C -0.08 -1.93 9.66 -39.66 -0.38 -2.32 16 13 C -0.24 -5.67 10.05 -39.29 -0.39 -6.07 16 14 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 15 C -0.16 -4.27 8.69 -38.87 -0.34 -4.61 16 16 C 0.13 3.43 5.56 -106.82 -0.59 2.84 16 17 C -0.46 -11.79 8.14 -37.74 -0.31 -12.09 16 18 H 0.07 1.87 6.67 -52.49 -0.35 1.52 16 19 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 20 N -0.80 -20.44 10.96 55.55 0.61 -19.83 16 21 Si 0.90 18.47 29.59 -169.99 -5.03 13.44 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 31 H 0.10 1.82 7.08 -51.93 -0.37 1.45 16 32 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 33 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 36 H 0.12 3.21 6.21 -52.48 -0.33 2.88 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -33.19 324.97 -7.12 -40.31 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.72 Total: 6.95 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.49 Total: -18.72 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 1.13 Total: -35.04 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.19 -7.12 -40.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777375794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.598 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds