Wall clock time and date at job start Mon Mar 30 2020 01:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47266 * 2 1 4 4 C 1.47203 * 109.47118 * 240.00400 * 2 1 3 5 5 N 2.60799 * 109.47137 * 240.00340 * 2 1 3 6 6 C 1.52996 * 109.47363 * 120.00384 * 2 1 3 7 7 N 1.46507 * 109.47103 * 294.99767 * 6 2 1 8 8 C 1.34773 * 120.00266 * 180.02562 * 7 6 2 9 9 O 1.21282 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 1.09000 * 109.46915 * 299.99899 * 1 2 3 26 26 H 1.09003 * 109.47362 * 59.99421 * 1 2 3 27 27 H 1.08995 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47212 * 175.00189 * 6 2 1 29 29 H 1.08991 * 109.47261 * 55.00023 * 6 2 1 30 30 H 0.97000 * 119.99705 * 0.02562 * 7 6 2 31 31 H 1.09001 * 109.46892 * 59.99768 * 10 8 7 32 32 H 1.08991 * 109.47294 * 299.99778 * 10 8 7 33 33 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 34 34 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 35 35 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 36 36 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 37 37 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1295 6 6 2.0400 -0.7213 1.2491 7 7 1.6525 0.0353 2.4424 8 6 1.9965 -0.4131 3.6659 9 8 2.6265 -1.4433 3.7791 10 6 1.5974 0.3648 4.8932 11 6 2.0999 -0.3456 6.1237 12 6 1.2778 -1.2156 6.8033 13 6 1.7353 -1.8653 7.9391 14 6 3.0257 -1.6526 8.3998 15 6 3.8669 -0.7921 7.7328 16 6 3.4132 -0.1270 6.5784 17 6 4.2691 0.7590 5.8843 18 1 4.1137 0.9465 4.8322 19 6 5.3175 1.3929 6.5606 20 7 5.2403 1.5868 7.8522 21 14 6.8273 1.9621 5.6194 22 1 7.7850 2.5994 6.5585 23 1 7.4741 0.7946 4.9685 24 1 6.4227 2.9455 4.5828 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1263 -0.7995 1.2055 29 1 1.6055 -1.7198 1.2950 30 1 1.1483 0.8590 2.3518 31 1 0.5110 0.4422 4.9370 32 1 2.0313 1.3636 4.8473 33 1 0.2711 -1.3891 6.4530 34 1 1.0818 -2.5424 8.4690 35 1 3.3718 -2.1645 9.2856 36 1 4.8717 -0.6283 8.0932 37 1 4.4233 1.3687 8.3273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777395026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:03 Heat of formation + Delta-G solvation = -11.270382 kcal Electronic energy + Delta-G solvation = -19970.568614 eV Core-core repulsion = 16904.803171 eV Total energy + Delta-G solvation = -3065.765443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.49706 -37.92067 -37.24911 -35.29011 -33.83632 -32.52295 -31.64213 -29.20146 -27.63400 -26.17672 -24.87948 -23.15338 -20.93150 -20.73631 -19.70936 -17.85458 -17.59779 -16.54394 -15.77396 -15.60559 -14.86488 -14.81426 -14.16184 -14.07908 -13.98813 -13.61641 -13.33839 -13.04146 -13.02261 -12.63265 -12.30712 -12.08392 -12.00573 -11.74316 -11.57079 -11.34493 -11.20762 -11.10078 -10.83686 -10.45788 -10.38244 -9.64177 -9.37245 -9.29020 -8.94794 -8.85895 -7.54291 -7.49243 -7.10946 -4.40894 2.41915 2.51189 2.76508 2.86672 3.16354 3.25125 3.29467 3.32697 3.38369 3.89874 4.03313 4.39819 4.55359 4.60762 4.76689 5.26080 5.32691 5.40476 5.55103 5.63926 5.76050 5.78467 5.92647 6.05945 6.18375 6.32938 6.37444 6.60349 6.70028 7.01716 7.22462 7.27350 7.43353 7.67363 7.82178 7.84448 7.87875 7.97218 8.22431 8.36199 8.76110 8.80346 8.94380 10.08739 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.005283 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.987626 B = 5298.677641 C = 6584.823259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.006 4.006 3 H 0.122 0.878 4 C 0.215 3.785 5 N -0.430 5.430 6 C 0.128 3.872 7 N -0.744 5.744 8 C 0.515 3.485 9 O -0.517 6.517 10 C -0.069 4.069 11 C -0.186 4.186 12 C -0.068 4.068 13 C -0.253 4.253 14 C -0.086 4.086 15 C -0.216 4.216 16 C 0.116 3.884 17 C -0.517 4.517 18 H 0.073 0.927 19 C 0.041 3.959 20 N -0.799 5.799 21 Si 1.059 2.941 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.277 1.277 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.398 0.602 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 3.207 -9.870 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 H 0.140 0.860 4 C -0.104 4.104 5 N -0.105 5.105 6 C 0.003 3.997 7 N -0.400 5.400 8 C 0.303 3.697 9 O -0.390 6.390 10 C -0.108 4.108 11 C -0.188 4.188 12 C -0.087 4.087 13 C -0.273 4.273 14 C -0.105 4.105 15 C -0.235 4.235 16 C 0.114 3.886 17 C -0.545 4.545 18 H 0.091 0.909 19 C -0.181 4.181 20 N -0.422 5.422 21 Si 0.883 3.117 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.202 1.202 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.232 0.768 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.011 2.335 -10.929 12.689 hybrid contribution -1.867 -0.236 0.086 1.884 sum -7.878 2.099 -10.842 13.566 Atomic orbital electron populations 1.21857 0.91422 1.03751 1.03485 1.19057 0.97616 0.99669 0.86435 0.86050 1.28845 0.93397 0.93758 0.94372 1.81237 1.08599 1.09013 1.11676 1.21131 1.00846 0.95409 0.82349 1.46055 1.60317 1.28200 1.05433 1.21253 0.78576 0.85968 0.83906 1.90706 1.37763 1.24273 1.86273 1.20240 1.00175 0.99873 0.90548 1.19002 0.94838 1.05892 0.99083 1.20357 0.97136 0.95911 0.95276 1.20264 0.97189 1.08369 1.01438 1.20609 0.94262 0.97627 0.97980 1.21145 0.99167 1.02504 1.00713 1.17392 0.90111 0.90351 0.90790 1.20438 1.12028 1.23767 0.98281 0.90933 1.26912 1.01958 0.93452 0.95787 1.70452 1.31095 1.31371 1.09285 0.83721 0.74981 0.77299 0.75671 1.19901 1.20070 1.20221 0.90167 0.91450 0.91413 0.90798 0.90846 0.76793 0.90486 0.88516 0.89583 0.89479 0.89415 0.87781 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.02 37.16 0.34 -0.44 16 2 C -0.01 -0.04 2.80 -93.41 -0.26 -0.30 16 3 H 0.12 0.59 8.14 -51.92 -0.42 0.17 16 4 C 0.22 2.18 14.65 -20.76 -0.30 1.88 16 5 N -0.43 -5.67 18.54 42.15 0.78 -4.89 16 6 C 0.13 1.37 5.02 -4.04 -0.02 1.35 16 7 N -0.74 -8.76 5.28 -60.30 -0.32 -9.08 16 8 C 0.52 9.14 7.46 -10.99 -0.08 9.06 16 9 O -0.52 -11.85 16.03 5.56 0.09 -11.76 16 10 C -0.07 -1.24 5.18 -29.03 -0.15 -1.39 16 11 C -0.19 -4.30 4.43 -103.91 -0.46 -4.76 16 12 C -0.07 -1.52 9.66 -39.66 -0.38 -1.91 16 13 C -0.25 -5.74 10.05 -39.29 -0.39 -6.13 16 14 C -0.09 -2.05 10.02 -39.66 -0.40 -2.45 16 15 C -0.22 -5.62 7.95 -38.87 -0.31 -5.93 16 16 C 0.12 3.02 5.30 -106.82 -0.57 2.45 16 17 C -0.52 -13.26 8.08 -37.74 -0.30 -13.56 16 18 H 0.07 1.81 6.73 -52.49 -0.35 1.45 16 19 C 0.04 1.02 4.94 -17.34 -0.09 0.93 16 20 N -0.80 -20.84 12.31 55.55 0.68 -20.16 16 21 Si 1.06 21.56 30.00 -169.99 -5.10 16.46 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 25 H 0.08 0.33 7.18 -51.93 -0.37 -0.04 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.40 3.16 7.65 -40.82 -0.31 2.85 16 31 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 32 H 0.10 1.71 7.06 -51.93 -0.37 1.35 16 33 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.10 2.79 6.49 -52.49 -0.34 2.45 16 37 H 0.30 7.99 6.68 -40.82 -0.27 7.72 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -32.49 322.79 -7.00 -39.49 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.61 Total: 6.28 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -3.38 Total: -21.20 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 1.15 Total: -34.13 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.10 Total: 16.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.49 -7.00 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777395026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.219 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds