Wall clock time and date at job start Mon Mar 30 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47099 * 2 1 4 4 C 1.47201 * 109.46981 * 120.00302 * 2 1 3 5 5 N 2.60805 * 109.47189 * 120.00050 * 2 1 3 6 6 C 1.53002 * 109.47069 * 239.99835 * 2 1 3 7 7 N 1.46503 * 109.46820 * 65.00013 * 6 2 1 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 6 2 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 6 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.08999 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46873 * 299.99817 * 1 2 3 27 27 H 1.08990 * 109.47207 * 59.99905 * 1 2 3 28 28 H 1.08994 * 109.47287 * 305.00104 * 6 2 1 29 29 H 1.08997 * 109.47057 * 184.99955 * 6 2 1 30 30 H 0.97002 * 120.00149 * 0.02562 * 7 6 2 31 31 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 32 32 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 33 33 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 34 34 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 35 35 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 36 36 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 37 37 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3994 -1.2295 2.1294 6 6 2.0400 -0.7213 -1.2492 7 7 1.6524 0.0353 -2.4424 8 6 1.9964 -0.4131 -3.6659 9 8 2.6264 -1.4432 -3.7792 10 6 1.5982 0.3655 -4.8931 11 6 2.1004 -0.3449 -6.1237 12 6 3.3059 0.0120 -6.6839 13 6 3.7669 -0.6352 -7.8196 14 6 3.0249 -1.6526 -8.4000 15 6 1.8200 -2.0304 -7.8533 16 6 1.3418 -1.3800 -6.7005 17 6 0.1053 -1.7601 -6.1296 18 1 -0.4632 -1.0482 -5.5496 19 6 -0.3817 -3.0588 -6.3160 20 7 0.4209 -4.0052 -6.7301 21 14 -2.1780 -3.4407 -5.9737 22 1 -2.3182 -3.9631 -4.5908 23 1 -2.9838 -2.2019 -6.1190 24 1 -2.6598 -4.4608 -6.9394 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2056 30 1 1.1488 0.8595 -2.3517 31 1 2.0329 1.3640 -4.8469 32 1 0.5119 0.4438 -4.9371 33 1 3.8924 0.8026 -6.2398 34 1 4.7116 -0.3454 -8.2553 35 1 3.3939 -2.1503 -9.2845 36 1 1.2438 -2.8233 -8.3068 37 1 0.0832 -4.9053 -6.8596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777395036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:06 Heat of formation + Delta-G solvation = -3.350081 kcal Electronic energy + Delta-G solvation = -20058.948753 eV Core-core repulsion = 16993.526760 eV Total energy + Delta-G solvation = -3065.421993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.34733 -37.77292 -37.08416 -35.18931 -33.57260 -32.40590 -31.52544 -29.42952 -27.52654 -26.12970 -24.93589 -23.06150 -20.91946 -20.56578 -19.44836 -17.65289 -17.15390 -16.42301 -15.72887 -15.45633 -15.29409 -14.48306 -14.43599 -13.94583 -13.64877 -13.49069 -13.20109 -12.94331 -12.88009 -12.58683 -12.49392 -12.00486 -11.73333 -11.52086 -11.47921 -11.26377 -11.11345 -11.07788 -10.87151 -10.68196 -10.39246 -9.46309 -9.32812 -9.13492 -9.11295 -8.73192 -7.29620 -7.27432 -6.67976 -4.29301 2.47712 2.56143 2.81689 2.98526 3.08146 3.10821 3.28548 3.40938 3.43138 3.95424 3.99205 4.48460 4.63107 4.71330 4.82960 5.36720 5.44557 5.52949 5.63502 5.77616 5.86503 5.89224 6.01109 6.16633 6.31141 6.38762 6.54935 6.72840 6.79715 7.13997 7.31401 7.32612 7.44974 7.66661 7.89344 7.97298 8.07035 8.15872 8.35012 8.67599 8.92498 8.94746 9.04253 10.26973 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.005688 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.524240 B = 4921.594314 C = 6201.028670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.005 4.005 3 H 0.120 0.880 4 C 0.216 3.784 5 N -0.432 5.432 6 C 0.129 3.871 7 N -0.746 5.746 8 C 0.516 3.484 9 O -0.508 6.508 10 C -0.067 4.067 11 C -0.184 4.184 12 C -0.080 4.080 13 C -0.242 4.242 14 C -0.105 4.105 15 C -0.162 4.162 16 C 0.131 3.869 17 C -0.460 4.460 18 H 0.075 0.925 19 C 0.078 3.922 20 N -0.790 5.790 21 Si 0.901 3.099 22 H -0.272 1.272 23 H -0.261 1.261 24 H -0.276 1.276 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.396 0.604 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.083 9.608 7.818 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 H 0.138 0.862 4 C -0.103 4.103 5 N -0.107 5.107 6 C 0.003 3.997 7 N -0.402 5.402 8 C 0.303 3.697 9 O -0.380 6.380 10 C -0.107 4.107 11 C -0.186 4.186 12 C -0.098 4.098 13 C -0.261 4.261 14 C -0.124 4.124 15 C -0.182 4.182 16 C 0.128 3.872 17 C -0.490 4.490 18 H 0.093 0.907 19 C -0.139 4.139 20 N -0.415 5.415 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.185 1.185 24 H -0.201 1.201 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.230 0.770 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.021 7.745 9.070 12.097 hybrid contribution -1.077 0.160 -0.042 1.090 sum -3.099 7.905 9.027 12.393 Atomic orbital electron populations 1.21867 0.91356 1.03988 1.03436 1.19059 0.97712 0.99432 0.86470 0.86229 1.28880 0.93337 0.93730 0.94363 1.81233 1.08742 1.08973 1.11754 1.21114 1.00472 0.95763 0.82334 1.46050 1.60635 1.28115 1.05447 1.21144 0.78817 0.86054 0.83674 1.90731 1.37858 1.23383 1.86002 1.20240 1.02332 0.97209 0.90906 1.18982 0.97039 1.04802 0.97734 1.20290 0.94992 0.98600 0.95958 1.20295 1.01129 1.03360 1.01349 1.20679 0.96000 0.97040 0.98667 1.21282 0.96878 1.02867 0.97153 1.17325 0.91455 0.88866 0.89520 1.19443 1.03709 0.96401 1.29443 0.90671 1.25841 0.98962 0.96099 0.93045 1.69840 1.35724 1.01999 1.33909 0.86428 0.83031 0.79140 0.78868 1.19752 1.18450 1.20107 0.91273 0.91552 0.90046 0.90682 0.91073 0.76994 0.90670 0.88923 0.89761 0.89729 0.89654 0.86620 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.02 37.16 0.34 -0.63 16 2 C 0.00 -0.04 2.80 -93.40 -0.26 -0.30 16 3 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.22 2.30 14.65 -20.76 -0.30 2.00 16 5 N -0.43 -5.90 18.54 42.16 0.78 -5.12 16 6 C 0.13 1.48 5.02 -4.04 -0.02 1.46 16 7 N -0.75 -9.19 5.28 -60.30 -0.32 -9.51 16 8 C 0.52 9.48 7.82 -10.99 -0.09 9.40 16 9 O -0.51 -12.25 16.03 5.56 0.09 -12.16 16 10 C -0.07 -1.21 5.35 -29.04 -0.16 -1.36 16 11 C -0.18 -4.26 4.43 -103.91 -0.46 -4.72 16 12 C -0.08 -1.80 9.66 -39.66 -0.38 -2.19 16 13 C -0.24 -5.57 10.05 -39.29 -0.39 -5.96 16 14 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 15 C -0.16 -4.28 8.68 -38.87 -0.34 -4.62 16 16 C 0.13 3.41 5.56 -106.82 -0.59 2.81 16 17 C -0.46 -11.72 8.46 -37.74 -0.32 -12.04 16 18 H 0.08 1.77 6.36 -52.48 -0.33 1.44 16 19 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 20 N -0.79 -20.87 10.98 55.55 0.61 -20.26 16 21 Si 0.90 18.43 29.59 -169.99 -5.03 13.40 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.45 7.18 -51.93 -0.37 0.07 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.40 3.27 7.66 -40.82 -0.31 2.95 16 31 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 32 H 0.09 1.57 6.48 -51.93 -0.34 1.23 16 33 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.12 3.14 6.23 -52.49 -0.33 2.81 16 37 H 0.28 6.73 8.30 -40.82 -0.34 6.40 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -33.22 323.58 -7.08 -40.30 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.62 Total: 5.71 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -3.47 Total: -17.24 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 1.07 Total: -34.89 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.22 -7.08 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777395036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.948 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds