Wall clock time and date at job start Mon Mar 30 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47099 * 2 1 4 4 C 1.47201 * 109.46981 * 120.00302 * 2 1 3 5 5 N 2.60805 * 109.47189 * 120.00050 * 2 1 3 6 6 C 1.53002 * 109.47069 * 239.99835 * 2 1 3 7 7 N 1.46503 * 109.46820 * 65.00013 * 6 2 1 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 6 2 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 6 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.08999 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46873 * 299.99817 * 1 2 3 27 27 H 1.08990 * 109.47207 * 59.99905 * 1 2 3 28 28 H 1.08994 * 109.47287 * 305.00104 * 6 2 1 29 29 H 1.08997 * 109.47057 * 184.99955 * 6 2 1 30 30 H 0.97002 * 120.00149 * 0.02562 * 7 6 2 31 31 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 32 32 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 33 33 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 34 34 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 35 35 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 36 36 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 37 37 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3994 -1.2295 2.1294 6 6 2.0400 -0.7213 -1.2492 7 7 1.6524 0.0353 -2.4424 8 6 1.9964 -0.4131 -3.6659 9 8 2.6264 -1.4432 -3.7792 10 6 1.5982 0.3655 -4.8931 11 6 2.1004 -0.3449 -6.1237 12 6 3.3059 0.0120 -6.6839 13 6 3.7669 -0.6352 -7.8196 14 6 3.0249 -1.6526 -8.4000 15 6 1.8200 -2.0304 -7.8533 16 6 1.3418 -1.3800 -6.7005 17 6 0.1053 -1.7601 -6.1296 18 1 -0.4632 -1.0482 -5.5496 19 6 -0.3817 -3.0588 -6.3160 20 7 0.4209 -4.0052 -6.7301 21 14 -2.1780 -3.4407 -5.9737 22 1 -2.3182 -3.9631 -4.5908 23 1 -2.9838 -2.2019 -6.1190 24 1 -2.6598 -4.4608 -6.9394 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2056 30 1 1.1488 0.8595 -2.3517 31 1 2.0329 1.3640 -4.8469 32 1 0.5119 0.4438 -4.9371 33 1 3.8924 0.8026 -6.2398 34 1 4.7116 -0.3454 -8.2553 35 1 3.3939 -2.1503 -9.2845 36 1 1.2438 -2.8233 -8.3068 37 1 0.0832 -4.9053 -6.8596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777395036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:06 Heat of formation + Delta-G solvation = -24.683139 kcal Electronic energy + Delta-G solvation = -20059.873823 eV Core-core repulsion = 16993.526760 eV Total energy + Delta-G solvation = -3066.347064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73203 -39.21275 -38.34324 -36.28103 -35.41850 -33.67047 -32.96594 -31.28128 -28.88361 -27.34410 -26.59020 -24.02654 -22.77013 -22.00069 -21.00879 -19.06487 -18.53941 -17.55575 -17.28238 -16.81509 -16.51326 -16.09790 -15.76351 -15.30408 -14.99579 -14.92815 -14.34358 -14.28737 -14.05613 -13.96056 -13.54578 -13.40897 -13.23017 -12.88503 -12.70760 -12.62217 -12.54035 -12.42611 -12.18307 -12.06558 -11.93947 -11.25806 -11.11355 -10.95832 -10.67488 -9.93480 -9.16552 -9.11251 -8.51856 -6.20500 1.05226 1.18530 1.40321 1.52608 1.58638 1.60650 1.72807 2.00513 2.24627 2.38996 2.86510 3.09294 3.72836 3.83120 3.94198 4.24209 4.26682 4.47741 4.55515 4.67695 4.74102 4.77762 4.83515 4.90298 4.96431 5.06283 5.12657 5.31689 5.37343 5.42287 5.60666 5.62040 5.85824 6.10292 6.20766 6.27843 6.49352 6.49491 6.78716 6.86105 7.05362 7.19264 7.62472 8.45751 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.005688 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.524240 B = 4921.594314 C = 6201.028670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.012 3.988 3 H 0.164 0.836 4 C 0.239 3.761 5 N -0.488 5.488 6 C 0.128 3.872 7 N -0.716 5.716 8 C 0.517 3.483 9 O -0.577 6.577 10 C -0.068 4.068 11 C -0.185 4.185 12 C -0.091 4.091 13 C -0.247 4.247 14 C -0.120 4.120 15 C -0.198 4.198 16 C 0.097 3.903 17 C -0.482 4.482 18 H 0.090 0.910 19 C 0.029 3.971 20 N -0.836 5.836 21 Si 0.974 3.026 22 H -0.270 1.270 23 H -0.244 1.244 24 H -0.276 1.276 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.421 0.579 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 12.618 9.120 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.009 4.009 3 H 0.181 0.819 4 C -0.078 4.078 5 N -0.164 5.164 6 C 0.003 3.997 7 N -0.372 5.372 8 C 0.305 3.695 9 O -0.454 6.454 10 C -0.107 4.107 11 C -0.187 4.187 12 C -0.109 4.109 13 C -0.266 4.266 14 C -0.138 4.138 15 C -0.218 4.218 16 C 0.094 3.906 17 C -0.511 4.511 18 H 0.108 0.892 19 C -0.184 4.184 20 N -0.462 5.462 21 Si 0.795 3.205 22 H -0.195 1.195 23 H -0.167 1.167 24 H -0.201 1.201 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.260 0.740 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.074 10.829 10.405 15.328 hybrid contribution -0.649 -0.692 -0.461 1.055 sum -3.723 10.137 9.943 14.679 Atomic orbital electron populations 1.21928 0.89993 1.03493 1.05292 1.19159 0.98488 1.00416 0.82852 0.81871 1.29394 0.91812 0.92459 0.94170 1.81261 1.10667 1.10693 1.13816 1.21084 0.99911 0.95211 0.83538 1.45640 1.59115 1.28504 1.03963 1.21171 0.78009 0.85049 0.85320 1.90722 1.41297 1.26294 1.87119 1.20318 1.03285 0.98546 0.88541 1.19540 0.96763 1.03476 0.98933 1.20759 0.95144 0.99292 0.95734 1.20704 1.01852 1.02555 1.01478 1.20933 0.95673 0.97770 0.99421 1.21304 0.98188 1.03708 0.98598 1.17759 0.92638 0.90270 0.89885 1.19767 1.04210 0.97074 1.30096 0.89242 1.26782 1.03316 0.95773 0.92533 1.69955 1.37882 1.02504 1.35889 0.85324 0.77375 0.79357 0.78464 1.19487 1.16704 1.20077 0.93036 0.89590 0.88304 0.93227 0.92112 0.73994 0.86171 0.87639 0.86263 0.87031 0.88212 0.88887 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.02 71.98 0.65 -0.73 16 2 C 0.01 0.14 2.80 -12.60 -0.04 0.11 16 3 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 4 C 0.24 4.68 14.65 89.44 1.31 5.99 16 5 N -0.49 -13.04 18.54 20.01 0.37 -12.67 16 6 C 0.13 2.70 5.02 86.38 0.43 3.13 16 7 N -0.72 -15.37 5.28 -463.07 -2.45 -17.81 16 8 C 0.52 18.01 7.82 87.65 0.69 18.69 16 9 O -0.58 -27.98 16.03 -3.04 -0.05 -28.03 16 10 C -0.07 -2.23 5.35 29.10 0.16 -2.08 16 11 C -0.19 -8.41 4.43 -19.40 -0.09 -8.49 16 12 C -0.09 -3.94 9.66 22.22 0.21 -3.72 16 13 C -0.25 -11.10 10.05 22.46 0.23 -10.87 16 14 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 15 C -0.20 -10.91 8.68 22.73 0.20 -10.71 16 16 C 0.10 5.13 5.56 -21.29 -0.12 5.01 16 17 C -0.48 -24.81 8.46 23.46 0.20 -24.61 16 18 H 0.09 4.14 6.36 -2.91 -0.02 4.12 16 19 C 0.03 1.49 5.16 85.26 0.44 1.93 16 20 N -0.84 -46.23 10.98 21.83 0.24 -46.00 16 21 Si 0.97 38.10 29.59 68.60 2.03 40.13 16 22 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 23 H -0.24 -8.79 7.11 99.48 0.71 -8.08 16 24 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 0.61 7.18 -2.39 -0.02 0.59 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.42 4.83 7.66 -92.71 -0.71 4.12 16 31 H 0.12 2.87 8.06 -2.39 -0.02 2.85 16 32 H 0.11 3.23 6.48 -2.39 -0.02 3.21 16 33 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.09 5.40 6.23 -2.91 -0.02 5.38 16 37 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 Total: -1.00 -77.87 323.58 5.02 -72.84 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.39 Total: 23.56 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 4.49 Total: -32.03 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.84 Total: -76.48 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -77.87 5.02 -72.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777395036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.158 kcal (2) G-P(sol) polarization free energy of solvation -77.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds