Wall clock time and date at job start Mon Mar 30 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35572 * 116.99844 * 2 1 4 4 N 1.31557 * 119.20212 * 0.25329 * 3 2 1 5 5 C 1.33764 * 121.25681 * 180.30638 * 4 3 2 6 6 C 1.40555 * 121.00233 * 179.72155 * 5 4 3 7 7 C 1.36117 * 119.75746 * 179.73296 * 6 5 4 8 8 C 1.39302 * 121.04322 * 359.97438 * 7 6 5 9 9 C 1.36188 * 120.86152 * 0.02562 * 8 7 6 10 10 C 1.40373 * 119.62724 * 359.97438 * 9 8 7 11 11 C 1.40915 * 121.29148 * 180.02562 * 10 9 8 12 12 C 1.36323 * 118.25713 * 179.97438 * 11 10 9 13 13 C 1.50705 * 120.05487 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.46987 * 104.99758 * 13 12 11 15 15 C 1.46900 * 110.99929 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47243 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00495 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00278 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99678 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00437 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47134 * 59.99492 * 20 18 16 22 22 H 1.48492 * 109.47283 * 180.02562 * 20 18 16 23 23 H 1.48512 * 109.46758 * 299.99951 * 20 18 16 24 24 H 1.09008 * 109.47269 * 299.99680 * 1 2 3 25 25 H 1.08998 * 109.47595 * 60.00074 * 1 2 3 26 26 H 1.09006 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.11775 * 359.75171 * 6 5 4 28 28 H 1.08006 * 119.47751 * 180.02562 * 7 6 5 29 29 H 1.08002 * 119.57097 * 180.02562 * 8 7 6 30 30 H 1.07993 * 120.18720 * 179.97438 * 9 8 7 31 31 H 1.08004 * 120.86508 * 359.97438 * 11 10 9 32 32 H 1.08998 * 109.47461 * 225.00266 * 13 12 11 33 33 H 1.09004 * 109.46735 * 344.99903 * 13 12 11 34 34 H 1.00896 * 111.00023 * 56.05029 * 14 13 12 35 35 H 1.08998 * 109.47227 * 299.99981 * 15 14 13 36 36 H 1.09001 * 109.47021 * 59.99688 * 15 14 13 37 37 H 0.97008 * 119.99614 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3126 2.3012 0.0051 5 6 1.8767 3.5141 -0.0008 6 6 1.0896 4.6786 -0.0012 7 6 1.6903 5.9000 -0.0018 8 6 3.0783 6.0179 -0.0014 9 6 3.8734 4.9122 -0.0011 10 6 3.2878 3.6365 -0.0005 11 6 4.0769 2.4690 0.0005 12 6 3.4434 1.2619 0.0016 13 6 4.2477 -0.0126 0.0032 14 7 4.2055 -0.6165 1.3416 15 6 4.9811 -1.8635 1.3812 16 6 4.9142 -2.4529 2.7665 17 1 4.3514 -1.9517 3.5401 18 6 5.5706 -3.6328 3.0462 19 7 6.2547 -4.2440 2.1038 20 14 5.4870 -4.3639 4.7631 21 1 4.0719 -4.6493 5.1112 22 1 6.2712 -5.6242 4.8032 23 1 6.0521 -3.3986 5.7401 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.0122 4.6044 -0.0008 28 1 1.0811 6.7919 -0.0016 29 1 3.5299 6.9990 -0.0015 30 1 4.9483 5.0163 -0.0012 31 1 5.1553 2.5290 0.0003 32 1 3.8274 -0.7085 -0.7229 33 1 5.2812 0.2097 -0.2628 34 1 3.2538 -0.7728 1.6379 35 1 4.5663 -2.5724 0.6647 36 1 6.0196 -1.6537 1.1250 37 1 6.7168 -5.0739 2.3007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787300539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:09 Heat of formation + Delta-G solvation = -8.496664 kcal Electronic energy + Delta-G solvation = -19889.761720 eV Core-core repulsion = 16824.116555 eV Total energy + Delta-G solvation = -3065.645166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.08909 -39.89677 -37.79312 -36.75820 -35.01557 -34.02594 -31.81426 -30.76744 -28.91619 -28.36204 -26.20019 -24.48248 -23.69379 -23.26703 -22.70992 -19.72392 -19.02346 -18.67806 -17.59368 -17.12378 -16.74645 -16.40037 -16.09666 -15.89062 -15.27839 -15.14314 -15.00159 -14.78073 -14.49255 -14.16883 -13.86403 -13.30050 -13.16905 -12.95700 -12.85313 -12.69455 -12.63724 -12.42061 -12.25934 -12.01496 -11.65521 -11.48342 -11.30748 -10.66093 -10.65147 -9.46253 -9.11212 -9.08772 -8.22324 -6.33605 -0.53863 -0.13623 1.03225 1.40924 1.44674 1.52806 1.93376 2.07689 2.40521 3.09947 3.10703 3.21075 3.60840 3.70921 3.73963 3.87381 4.12533 4.21490 4.35098 4.38250 4.39098 4.44580 4.50457 4.67776 4.69696 4.81562 4.91836 5.05662 5.12429 5.13732 5.26679 5.46761 5.47616 5.55990 5.59579 5.88833 6.00225 6.20900 6.40928 6.64960 6.78040 6.85744 7.36776 8.89032 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025104 B = 0.003936 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.107358 B = 7112.584683 C = 7604.472297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.344 3.656 4 N -0.554 5.554 5 C 0.136 3.864 6 C -0.128 4.128 7 C -0.080 4.080 8 C -0.130 4.130 9 C -0.084 4.084 10 C -0.146 4.146 11 C -0.012 4.012 12 C -0.150 4.150 13 C 0.112 3.888 14 N -0.680 5.680 15 C 0.209 3.791 16 C -0.538 4.538 17 H 0.060 0.940 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.973 3.027 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.268 1.268 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.138 0.862 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.169 0.831 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.332 0.668 35 H -0.039 1.039 36 H 0.008 0.992 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 20.591 -6.257 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.227 6.227 3 C 0.151 3.849 4 N -0.281 5.281 5 C 0.016 3.984 6 C -0.147 4.147 7 C -0.099 4.099 8 C -0.148 4.148 9 C -0.103 4.103 10 C -0.149 4.149 11 C -0.037 4.037 12 C -0.153 4.153 13 C -0.017 4.017 14 N -0.310 5.310 15 C 0.082 3.918 16 C -0.576 4.576 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.572 5.572 20 Si 0.797 3.203 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.193 1.193 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.134 0.866 27 H 0.155 0.845 28 H 0.179 0.821 29 H 0.178 0.822 30 H 0.172 0.828 31 H 0.186 0.814 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.148 0.852 35 H -0.021 1.021 36 H 0.026 0.974 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.477 20.536 -6.053 23.413 hybrid contribution 0.045 -1.514 0.109 1.518 sum -9.431 19.022 -5.944 22.048 Atomic orbital electron populations 1.23047 0.75746 1.04392 1.02414 1.86271 1.24611 1.24850 1.87005 1.20044 0.89188 0.85019 0.90604 1.67652 1.39376 0.98191 1.22856 1.18954 0.91198 0.90896 0.97354 1.20899 1.00359 0.90401 1.03001 1.21311 0.95613 0.97517 0.95474 1.21303 0.93606 0.99899 0.99949 1.21299 1.01596 0.90105 0.97294 1.19011 0.93629 0.95756 1.06457 1.21565 1.01539 0.89388 0.91228 1.19726 0.90883 0.97264 1.07463 1.20636 0.98776 0.91479 0.90832 1.60694 1.17477 1.29073 1.23799 1.19224 0.92351 0.84854 0.95392 1.21476 1.31994 1.07239 0.96906 0.92155 1.25930 0.94574 0.97086 1.01883 1.70082 1.33628 1.18454 1.35060 0.85387 0.78534 0.77524 0.78854 1.19271 1.20510 1.19296 0.92360 0.91895 0.86599 0.84453 0.82096 0.82187 0.82834 0.81368 0.95543 0.89810 0.85179 1.02089 0.97440 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.36 113.37 1.17 2.16 16 2 O -0.32 -11.09 9.18 -88.79 -0.82 -11.90 16 3 C 0.34 11.92 7.36 85.16 0.63 12.55 16 4 N -0.55 -17.88 9.13 -302.15 -2.76 -20.64 16 5 C 0.14 3.89 6.60 40.25 0.27 4.15 16 6 C -0.13 -2.77 9.98 22.34 0.22 -2.54 16 7 C -0.08 -1.20 9.94 22.03 0.22 -0.99 16 8 C -0.13 -1.85 9.96 22.05 0.22 -1.63 16 9 C -0.08 -1.55 9.77 22.31 0.22 -1.33 16 10 C -0.15 -3.81 5.74 -21.26 -0.12 -3.93 16 11 C -0.01 -0.33 9.48 22.48 0.21 -0.12 16 12 C -0.15 -5.12 5.41 -19.88 -0.11 -5.22 16 13 C 0.11 4.34 5.43 85.56 0.46 4.81 16 14 N -0.68 -31.64 6.48 -521.98 -3.38 -35.02 16 15 C 0.21 11.66 5.44 85.56 0.47 12.12 16 16 C -0.54 -31.74 9.32 25.60 0.24 -31.50 16 17 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 18 C 0.00 0.21 5.46 84.65 0.46 0.68 16 19 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 20 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H 0.06 1.47 8.09 -2.38 -0.02 1.45 16 25 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 26 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 30 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.17 3.81 8.01 -2.91 -0.02 3.78 16 32 H 0.03 1.07 7.99 -2.39 -0.02 1.05 16 33 H 0.08 3.03 7.95 -2.38 -0.02 3.01 16 34 H 0.33 15.53 8.02 -89.70 -0.72 14.81 16 35 H -0.04 -2.31 8.14 -2.39 -0.02 -2.33 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -71.65 320.14 0.27 -71.38 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.36 Total: 16.66 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.56 Total: -10.80 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -5.86 Total: -112.43 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.82 Total: -11.90 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.65 0.27 -71.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787300539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.883 kcal (2) G-P(sol) polarization free energy of solvation -71.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds