Wall clock time and date at job start Mon Mar 30 2020 01:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36829 * 125.06168 * 2 1 4 4 C 1.34242 * 109.93129 * 179.73402 * 3 2 1 5 5 C 1.50697 * 126.50538 * 180.24659 * 4 3 2 6 6 C 1.50701 * 109.46817 * 265.02603 * 5 4 3 7 7 O 1.21283 * 119.99989 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00146 * 179.97438 * 6 5 4 9 9 C 1.46490 * 120.00069 * 179.97438 * 8 6 5 10 10 C 1.50710 * 109.47103 * 179.97438 * 9 8 6 11 11 H 1.07995 * 119.99815 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99998 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00066 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99878 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47195 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47109 * 119.99962 * 14 12 10 17 17 H 1.48495 * 109.47283 * 239.99917 * 14 12 10 18 18 C 1.46491 * 106.99657 * 0.26676 * 4 3 2 19 19 C 1.39627 * 134.03250 * 180.02562 * 18 4 3 20 20 C 1.36628 * 119.76112 * 179.97438 * 19 18 4 21 21 C 1.38824 * 120.53228 * 359.97438 * 20 19 18 22 22 C 1.37752 * 120.66701 * 359.97438 * 21 20 19 23 23 C 1.37691 * 125.06580 * 180.20252 * 2 1 3 24 24 H 1.09000 * 109.46857 * 90.02998 * 1 2 3 25 25 H 1.09000 * 109.46992 * 210.02533 * 1 2 3 26 26 H 1.08998 * 109.46961 * 330.02210 * 1 2 3 27 27 H 1.08002 * 125.03779 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47084 * 25.01930 * 5 4 3 29 29 H 1.08994 * 109.47229 * 145.02645 * 5 4 3 30 30 H 0.97002 * 119.99566 * 359.97438 * 8 6 5 31 31 H 1.08998 * 109.47654 * 299.99545 * 9 8 6 32 32 H 1.09000 * 109.47613 * 60.00140 * 9 8 6 33 33 H 0.96998 * 120.00019 * 180.02562 * 13 12 10 34 34 H 1.07999 * 120.11793 * 359.95479 * 19 18 4 35 35 H 1.08008 * 119.73158 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.67281 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.11187 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7696 0.0059 5 6 4.7285 1.7049 0.0131 6 6 5.2057 1.9222 -1.3998 7 8 4.6421 1.3713 -2.3217 8 7 6.2588 2.7286 -1.6389 9 6 6.7231 2.9394 -3.0122 10 6 7.9039 3.8758 -3.0052 11 1 8.2719 4.2738 -2.0712 12 6 8.5142 4.2245 -4.1913 13 7 8.0664 3.7394 -5.3288 14 14 9.9782 5.3846 -4.1826 15 1 10.2844 5.7848 -2.7857 16 1 11.1570 4.6986 -4.7700 17 1 9.6576 6.5923 -4.9850 18 6 3.5946 -0.6945 0.0034 19 6 4.6296 -1.6318 0.0073 20 6 4.3361 -2.9662 0.0038 21 6 3.0168 -3.3981 -0.0031 22 6 1.9804 -2.4907 -0.0060 23 6 2.2561 -1.1270 -0.0040 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 1.8834 2.1355 0.0004 28 1 4.4332 2.6600 0.4477 29 1 5.5331 1.2693 0.6054 30 1 6.7093 3.1695 -0.9016 31 1 7.0190 1.9844 -3.4464 32 1 5.9184 3.3743 -3.6051 33 1 8.4960 3.9844 -6.1632 34 1 5.6583 -1.3032 0.0128 35 1 5.1370 -3.6908 0.0064 36 1 2.8006 -4.4563 -0.0054 37 1 0.9573 -2.8366 -0.0110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787619371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:45 Heat of formation + Delta-G solvation = 17.017908 kcal Electronic energy + Delta-G solvation = -19750.658074 eV Core-core repulsion = 16686.119304 eV Total energy + Delta-G solvation = -3064.538771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23987 -38.53215 -36.93981 -34.15241 -33.47422 -32.25057 -30.24238 -30.01801 -28.42324 -27.00268 -25.08551 -22.61249 -22.44503 -21.31348 -19.94145 -19.11648 -17.07818 -16.61623 -16.44825 -15.62575 -15.36695 -15.16020 -14.99378 -14.54533 -14.10837 -13.85245 -13.75196 -12.99828 -12.89061 -12.74602 -12.58527 -12.16520 -12.08806 -11.89908 -11.54913 -11.19354 -11.12466 -10.91051 -10.85091 -10.65001 -10.27140 -9.46097 -9.32497 -8.87866 -8.68890 -8.02960 -7.77449 -7.41348 -6.12696 -4.19260 1.26711 1.76586 2.75728 2.88048 3.25766 3.32784 3.36000 3.54131 4.02946 4.29048 4.52740 4.63621 4.76433 4.89602 5.02044 5.05371 5.20537 5.23281 5.27494 5.35251 5.44261 5.65100 5.74868 5.78645 5.86189 5.99196 6.01469 6.29428 6.59337 6.75705 6.87781 6.94335 7.32665 7.38924 7.41034 7.54991 7.58983 7.73909 8.02608 8.73436 8.85797 9.24293 9.48097 10.97611 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.003604 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.984869 B = 7767.329623 C = 8196.606881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.490 5.490 3 C 0.056 3.944 4 C -0.138 4.138 5 C -0.068 4.068 6 C 0.497 3.503 7 O -0.546 6.546 8 N -0.717 5.717 9 C 0.250 3.750 10 C -0.541 4.541 11 H 0.063 0.937 12 C 0.062 3.938 13 N -0.886 5.886 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.089 4.089 19 C -0.062 4.062 20 C -0.152 4.152 21 C -0.103 4.103 22 C -0.134 4.134 23 C 0.097 3.903 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.166 0.834 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.389 0.611 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.944 -8.726 14.891 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.174 5.174 3 C -0.069 4.069 4 C -0.145 4.145 5 C -0.109 4.109 6 C 0.281 3.719 7 O -0.425 6.425 8 N -0.366 5.366 9 C 0.129 3.871 10 C -0.579 4.579 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.524 5.524 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.093 4.093 19 C -0.081 4.081 20 C -0.172 4.172 21 C -0.122 4.122 22 C -0.155 4.155 23 C -0.009 4.009 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.183 0.817 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.222 0.778 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.673 -9.070 13.994 21.565 hybrid contribution 0.920 0.911 0.056 1.296 sum -12.753 -8.159 14.050 20.654 Atomic orbital electron populations 1.21870 0.77499 1.03725 1.02851 1.43649 1.05560 1.04283 1.63905 1.21479 0.89888 0.90844 1.04641 1.19630 0.92977 0.91484 1.10455 1.20007 0.96084 0.98870 0.95945 1.20497 0.80999 0.79830 0.90576 1.90670 1.56827 1.48998 1.45961 1.46461 1.31328 1.46860 1.11988 1.19063 0.94340 0.96727 0.76978 1.21288 1.14466 1.28674 0.93494 0.91851 1.24964 0.97569 0.96337 0.95240 1.69994 1.40858 1.43653 0.97871 0.86371 0.82018 0.80396 0.78182 1.19621 1.20828 1.20851 1.19016 0.92113 0.92830 1.05370 1.20297 0.98109 0.92107 0.97555 1.20576 0.96381 0.95422 1.04774 1.20724 0.92310 0.98556 1.00645 1.19917 0.99152 0.89212 1.07173 1.18222 0.90081 0.88243 1.04353 0.91483 0.90445 0.90075 0.81707 0.88826 0.88781 0.77830 0.95691 0.95743 0.92566 0.86224 0.86263 0.86146 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 11.03 59.85 0.66 1.34 16 2 N -0.49 -6.37 3.18 -121.80 -0.39 -6.76 16 3 C 0.06 0.77 11.20 -16.73 -0.19 0.58 16 4 C -0.14 -2.18 4.81 -102.71 -0.49 -2.68 16 5 C -0.07 -1.02 6.23 -29.04 -0.18 -1.20 16 6 C 0.50 10.22 7.82 -10.98 -0.09 10.13 16 7 O -0.55 -13.85 16.03 5.55 0.09 -13.76 16 8 N -0.72 -15.38 5.55 -61.47 -0.34 -15.72 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 10 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 11 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 14 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.09 -1.45 6.35 -105.14 -0.67 -2.12 16 19 C -0.06 -0.95 10.05 -39.64 -0.40 -1.35 16 20 C -0.15 -2.00 9.97 -39.95 -0.40 -2.40 16 21 C -0.10 -1.24 10.01 -39.54 -0.40 -1.64 16 22 C -0.13 -1.69 9.97 -39.43 -0.39 -2.09 16 23 C 0.10 1.43 6.81 -83.98 -0.57 0.86 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.52 8.11 -51.93 -0.42 0.09 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -35.61 324.80 -8.53 -44.14 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.94 Total: 4.31 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.56 Total: -7.34 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.01 Total: -48.27 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.61 -8.53 -44.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.161 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds