Wall clock time and date at job start Mon Mar 30 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36829 * 125.06168 * 2 1 4 4 C 1.34242 * 109.93129 * 179.73402 * 3 2 1 5 5 C 1.50697 * 126.50538 * 180.24659 * 4 3 2 6 6 C 1.50701 * 109.46817 * 265.02603 * 5 4 3 7 7 O 1.21283 * 119.99989 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00146 * 179.97438 * 6 5 4 9 9 C 1.46490 * 120.00069 * 179.97438 * 8 6 5 10 10 C 1.50710 * 109.47103 * 179.97438 * 9 8 6 11 11 H 1.07995 * 119.99815 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99998 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00066 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99878 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47195 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47109 * 119.99962 * 14 12 10 17 17 H 1.48495 * 109.47283 * 239.99917 * 14 12 10 18 18 C 1.46491 * 106.99657 * 0.26676 * 4 3 2 19 19 C 1.39627 * 134.03250 * 180.02562 * 18 4 3 20 20 C 1.36628 * 119.76112 * 179.97438 * 19 18 4 21 21 C 1.38824 * 120.53228 * 359.97438 * 20 19 18 22 22 C 1.37752 * 120.66701 * 359.97438 * 21 20 19 23 23 C 1.37691 * 125.06580 * 180.20252 * 2 1 3 24 24 H 1.09000 * 109.46857 * 90.02998 * 1 2 3 25 25 H 1.09000 * 109.46992 * 210.02533 * 1 2 3 26 26 H 1.08998 * 109.46961 * 330.02210 * 1 2 3 27 27 H 1.08002 * 125.03779 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47084 * 25.01930 * 5 4 3 29 29 H 1.08994 * 109.47229 * 145.02645 * 5 4 3 30 30 H 0.97002 * 119.99566 * 359.97438 * 8 6 5 31 31 H 1.08998 * 109.47654 * 299.99545 * 9 8 6 32 32 H 1.09000 * 109.47613 * 60.00140 * 9 8 6 33 33 H 0.96998 * 120.00019 * 180.02562 * 13 12 10 34 34 H 1.07999 * 120.11793 * 359.95479 * 19 18 4 35 35 H 1.08008 * 119.73158 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.67281 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.11187 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7696 0.0059 5 6 4.7285 1.7049 0.0131 6 6 5.2057 1.9222 -1.3998 7 8 4.6421 1.3713 -2.3217 8 7 6.2588 2.7286 -1.6389 9 6 6.7231 2.9394 -3.0122 10 6 7.9039 3.8758 -3.0052 11 1 8.2719 4.2738 -2.0712 12 6 8.5142 4.2245 -4.1913 13 7 8.0664 3.7394 -5.3288 14 14 9.9782 5.3846 -4.1826 15 1 10.2844 5.7848 -2.7857 16 1 11.1570 4.6986 -4.7700 17 1 9.6576 6.5923 -4.9850 18 6 3.5946 -0.6945 0.0034 19 6 4.6296 -1.6318 0.0073 20 6 4.3361 -2.9662 0.0038 21 6 3.0168 -3.3981 -0.0031 22 6 1.9804 -2.4907 -0.0060 23 6 2.2561 -1.1270 -0.0040 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 1.8834 2.1355 0.0004 28 1 4.4332 2.6600 0.4477 29 1 5.5331 1.2693 0.6054 30 1 6.7093 3.1695 -0.9016 31 1 7.0190 1.9844 -3.4464 32 1 5.9184 3.3743 -3.6051 33 1 8.4960 3.9844 -6.1632 34 1 5.6583 -1.3032 0.0128 35 1 5.1370 -3.6908 0.0064 36 1 2.8006 -4.4563 -0.0054 37 1 0.9573 -2.8366 -0.0110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787619371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:44 Heat of formation + Delta-G solvation = -6.440050 kcal Electronic energy + Delta-G solvation = -19751.675288 eV Core-core repulsion = 16686.119304 eV Total energy + Delta-G solvation = -3065.555984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.24361 -40.26058 -37.90921 -36.10851 -34.60724 -34.28401 -31.27656 -31.15086 -29.64463 -28.71435 -26.20777 -24.50455 -23.52425 -22.35036 -21.53297 -20.38245 -18.87672 -17.73059 -17.46805 -17.37530 -16.89356 -16.37151 -16.15248 -16.10388 -15.81806 -14.87383 -14.77044 -14.52827 -14.26049 -13.97159 -13.76144 -13.61299 -13.58716 -13.09421 -12.87817 -12.80533 -12.71702 -12.22807 -12.20461 -12.11245 -11.66865 -11.43958 -10.80420 -10.78973 -10.36814 -9.76483 -9.05198 -8.44283 -8.27891 -6.44951 0.24376 0.73909 1.43553 1.45071 1.58588 1.67466 1.89083 1.99255 2.36109 2.78521 3.06228 3.06586 3.78478 3.87231 3.93688 4.13396 4.20560 4.31425 4.43117 4.46211 4.47794 4.63339 4.68924 4.72533 4.87800 4.92201 5.01807 5.15709 5.24861 5.28811 5.52384 5.59444 5.73825 5.74977 5.85617 5.88106 5.90210 6.32582 6.48527 6.67428 7.01041 7.25114 7.60611 8.84431 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.003604 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.984869 B = 7767.329623 C = 8196.606881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.491 5.491 3 C 0.061 3.939 4 C -0.181 4.181 5 C -0.050 4.050 6 C 0.495 3.505 7 O -0.599 6.599 8 N -0.711 5.711 9 C 0.267 3.733 10 C -0.553 4.553 11 H 0.086 0.914 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.986 3.014 15 H -0.251 1.251 16 H -0.280 1.280 17 H -0.278 1.278 18 C -0.123 4.123 19 C -0.095 4.095 20 C -0.155 4.155 21 C -0.107 4.107 22 C -0.134 4.134 23 C 0.073 3.927 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.194 0.806 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.409 0.591 31 H -0.019 1.019 32 H -0.016 1.016 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -8.260 16.951 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.173 5.173 3 C -0.064 4.064 4 C -0.188 4.188 5 C -0.090 4.090 6 C 0.283 3.717 7 O -0.481 6.481 8 N -0.361 5.361 9 C 0.144 3.856 10 C -0.591 4.591 11 H 0.104 0.896 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.809 3.191 15 H -0.175 1.175 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.174 4.174 21 C -0.126 4.126 22 C -0.155 4.155 23 C -0.033 4.033 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.211 0.789 28 H 0.149 0.851 29 H 0.132 0.868 30 H 0.245 0.755 31 H -0.001 1.001 32 H 0.002 0.998 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.157 0.843 36 H 0.171 0.829 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.191 -8.607 16.120 23.136 hybrid contribution 0.958 0.668 -0.600 1.313 sum -13.232 -7.939 15.520 21.886 Atomic orbital electron populations 1.22200 0.74780 1.05944 1.03670 1.43981 1.07207 1.03509 1.62648 1.21987 0.89659 0.92284 1.02508 1.19856 0.94063 0.91599 1.13262 1.19941 0.96641 1.00921 0.91462 1.21606 0.79562 0.77883 0.92694 1.90637 1.58297 1.50724 1.48397 1.46212 1.32018 1.47591 1.10296 1.18493 0.93400 0.94323 0.79421 1.21675 1.14330 1.28504 0.94606 0.89646 1.26108 1.00971 0.98115 0.94603 1.70162 1.42788 1.45403 0.98872 0.85086 0.77283 0.77509 0.79181 1.17453 1.20539 1.20415 1.19415 0.93384 0.93613 1.06400 1.20466 0.97897 0.93300 0.99715 1.20914 0.97858 0.94995 1.03658 1.21150 0.91621 1.00260 0.99560 1.20333 1.00837 0.88461 1.05845 1.18594 0.90039 0.89585 1.05097 0.91268 0.88671 0.87576 0.78897 0.85061 0.86830 0.75548 1.00070 0.99756 0.92314 0.86978 0.84332 0.82852 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 11.03 127.77 1.41 2.44 16 2 N -0.49 -12.04 3.18 -539.27 -1.71 -13.75 16 3 C 0.06 1.61 11.20 83.00 0.93 2.54 16 4 C -0.18 -5.66 4.81 -18.63 -0.09 -5.75 16 5 C -0.05 -1.43 6.23 29.10 0.18 -1.25 16 6 C 0.49 20.83 7.82 87.66 0.69 21.51 16 7 O -0.60 -31.87 16.03 -3.04 -0.05 -31.92 16 8 N -0.71 -31.03 5.55 -466.79 -2.59 -33.62 16 9 C 0.27 15.16 5.43 85.64 0.46 15.63 16 10 C -0.55 -30.71 9.28 25.60 0.24 -30.48 16 11 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 14 Si 0.99 42.89 29.54 68.60 2.03 44.91 16 15 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 C -0.12 -4.11 6.35 -20.20 -0.13 -4.23 16 19 C -0.10 -3.00 10.05 22.23 0.22 -2.78 16 20 C -0.16 -4.03 9.97 22.03 0.22 -3.81 16 21 C -0.11 -2.40 10.01 22.29 0.22 -2.18 16 22 C -0.13 -3.17 9.97 22.37 0.22 -2.95 16 23 C 0.07 2.11 6.81 39.03 0.27 2.37 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 0.99 8.11 -2.39 -0.02 0.97 16 26 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.19 3.70 8.06 -2.91 -0.02 3.67 16 28 H 0.13 2.77 8.14 -2.38 -0.02 2.75 16 29 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.41 14.49 8.32 -92.71 -0.77 13.72 16 31 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -82.00 324.80 3.57 -78.43 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.30 Total: 21.62 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.31 Total: -8.40 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.02 Total: -104.65 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.05 Total: -31.92 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -82.00 3.57 -78.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.993 kcal (2) G-P(sol) polarization free energy of solvation -82.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds