Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47094 * 272.76554 * 3 2 1 5 5 C 1.37103 * 119.99881 * 264.14332 * 4 3 2 6 6 H 1.08002 * 120.00049 * 197.42703 * 5 4 3 7 7 C 1.38955 * 120.00064 * 17.42845 * 5 4 3 8 8 N 1.31413 * 119.99867 * 21.53360 * 7 5 4 9 9 Si 1.86792 * 119.99815 * 201.54217 * 7 5 4 10 10 H 1.48499 * 109.47454 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47310 * 119.99828 * 9 7 5 12 12 H 1.48502 * 109.47021 * 239.99377 * 9 7 5 13 13 C 1.34774 * 120.00180 * 84.14107 * 4 3 2 14 14 O 1.21293 * 120.00021 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99826 * 0.02562 * 13 4 3 16 16 N 1.46505 * 109.46909 * 179.97438 * 15 13 4 17 17 C 1.46493 * 120.00346 * 269.99811 * 16 15 13 18 18 C 1.39681 * 119.99797 * 90.00410 * 16 15 13 19 19 C 1.38900 * 120.07271 * 180.02562 * 18 16 15 20 20 C 1.38114 * 119.92605 * 179.97438 * 19 18 16 21 21 C 1.38288 * 120.06762 * 359.97438 * 20 19 18 22 22 C 1.38282 * 120.15415 * 0.27622 * 21 20 19 23 23 C 1.38107 * 120.07103 * 359.44706 * 22 21 20 24 24 H 4.40637 * 5.51428 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46769 * 152.76632 * 3 2 1 26 26 H 1.08995 * 109.47001 * 32.76559 * 3 2 1 27 27 H 0.97000 * 120.00017 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47195 * 59.99715 * 15 13 4 29 29 H 1.08996 * 109.47273 * 299.99805 * 15 13 4 30 30 H 1.09000 * 109.47725 * 270.00412 * 17 16 15 31 31 H 1.09004 * 109.47190 * 30.00493 * 17 16 15 32 32 H 1.09000 * 109.47175 * 150.00062 * 17 16 15 33 33 H 1.07999 * 120.04182 * 359.97438 * 19 18 16 34 34 H 1.07991 * 119.96441 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.91987 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.96150 * 179.70010 * 22 21 20 37 37 H 1.07997 * 120.03412 * 180.27143 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0658 1.3796 5 6 3.4766 1.0849 2.0418 6 1 4.0890 1.0351 2.9300 7 6 3.0354 2.3153 1.5702 8 7 1.9840 2.3792 0.7844 9 14 3.9371 3.8783 2.0529 10 1 5.0791 3.5376 2.9389 11 1 4.4424 4.5556 0.8317 12 1 3.0064 4.7847 2.7723 13 6 3.2472 -1.2580 1.9978 14 8 3.6520 -1.3130 3.1399 15 6 2.8715 -2.5228 1.2698 16 7 3.0827 -3.6743 2.1506 17 6 4.3782 -4.3581 2.1646 18 6 2.0487 -4.1203 2.9770 19 6 2.2474 -5.2116 3.8131 20 6 1.2230 -5.6497 4.6294 21 6 0.0009 -5.0028 4.6152 22 6 -0.2019 -3.9193 3.7802 23 6 0.8200 -3.4726 2.9657 24 1 -1.0500 0.0002 0.0001 25 1 3.0089 0.9146 -0.4703 26 1 3.0097 -0.8633 -0.5562 27 1 1.6758 3.2382 0.4555 28 1 3.4922 -2.6278 0.3799 29 1 1.8225 -2.4760 0.9776 30 1 4.3756 -5.1569 1.4230 31 1 5.1680 -3.6451 1.9277 32 1 4.5552 -4.7809 3.1535 33 1 3.2017 -5.7169 3.8250 34 1 1.3769 -6.4978 5.2800 35 1 -0.7984 -5.3472 5.2548 36 1 -1.1592 -3.4194 3.7681 37 1 0.6623 -2.6236 2.3170 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798801723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = 80.709337 kcal Electronic energy + Delta-G solvation = -20724.024506 eV Core-core repulsion = 17662.247602 eV Total energy + Delta-G solvation = -3061.776903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.48402 -38.33016 -35.81472 -34.85353 -32.18950 -31.25369 -30.76279 -29.63647 -28.32682 -26.46511 -25.19098 -23.95814 -21.91750 -20.78106 -19.01286 -17.91171 -17.32392 -16.66946 -16.30208 -15.32295 -15.18663 -14.73430 -14.46682 -14.04733 -13.85864 -13.66476 -13.21494 -13.16109 -12.54939 -12.42554 -12.24126 -12.16696 -11.75859 -11.62592 -11.29875 -11.08562 -11.03280 -10.50404 -10.44216 -10.33124 -9.72984 -9.39546 -9.30121 -8.94207 -8.55376 -8.44148 -7.88724 -6.87964 -6.34710 -3.87522 1.81531 2.00037 3.11543 3.24102 3.29815 3.41803 3.66132 3.88141 3.99597 4.16673 4.29065 4.93805 5.01726 5.16574 5.27217 5.37834 5.41188 5.51463 5.57035 5.65612 5.79007 5.82924 5.84060 5.93908 6.05833 6.11052 6.24351 6.36093 6.65899 6.69436 6.83338 6.98179 6.99019 7.22407 7.54369 7.56591 7.87077 8.04648 8.41099 8.75719 9.12364 9.33103 9.88420 10.65319 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.005437 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.548654 B = 5148.521913 C = 5425.387883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.117 4.117 3 C 0.230 3.770 4 N -0.442 5.442 5 C -0.313 4.313 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.862 5.862 9 Si 0.919 3.081 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.429 3.571 14 O -0.568 6.568 15 C 0.109 3.891 16 N -0.607 5.607 17 C 0.101 3.899 18 C 0.234 3.766 19 C -0.203 4.203 20 C -0.078 4.078 21 C -0.190 4.190 22 C -0.073 4.073 23 C -0.189 4.189 24 H 0.199 0.801 25 H 0.111 0.889 26 H 0.060 0.940 27 H 0.267 0.733 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -11.306 -2.162 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.119 4.119 3 C 0.107 3.893 4 N -0.161 5.161 5 C -0.440 4.440 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.501 5.501 9 Si 0.746 3.254 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.216 3.784 14 O -0.451 6.451 15 C -0.018 4.018 16 N -0.316 5.316 17 C -0.042 4.042 18 C 0.131 3.869 19 C -0.225 4.225 20 C -0.097 4.097 21 C -0.211 4.211 22 C -0.091 4.091 23 C -0.211 4.211 24 H 0.216 0.784 25 H 0.129 0.871 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.632 -11.110 -1.807 11.273 hybrid contribution -0.015 1.220 0.142 1.228 sum -0.647 -9.890 -1.664 10.050 Atomic orbital electron populations 1.24296 0.95387 1.05952 1.01905 1.23181 0.94359 0.95831 0.98528 1.18272 0.84328 1.01748 0.84963 1.43780 1.56211 1.05569 1.10589 1.19677 1.30090 0.82271 1.11999 0.87925 1.25272 0.95176 0.99322 0.97513 1.70091 1.19722 1.26041 1.34204 0.85980 0.79751 0.81312 0.78375 1.19270 1.20600 1.20900 1.20707 0.84980 0.85028 0.87692 1.90541 1.50123 1.86383 1.18042 1.21346 1.02815 0.85299 0.92330 1.45983 1.11073 1.31194 1.43339 1.21547 0.84690 0.96577 1.01406 1.17791 0.87756 0.92055 0.89313 1.20590 1.00127 1.00184 1.01641 1.20769 0.92967 0.98607 0.97313 1.20782 0.97840 0.99310 1.03135 1.20838 0.98024 0.95575 0.94703 1.20752 0.92947 1.02719 1.04662 0.78351 0.87106 0.92184 0.92201 0.89474 0.88856 0.93765 0.91581 0.91601 0.86402 0.86773 0.87041 0.86597 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.15 19.25 29.55 0.57 -4.58 16 2 C -0.12 -2.54 10.88 -37.12 -0.40 -2.94 16 3 C 0.23 4.89 4.91 -6.83 -0.03 4.86 16 4 N -0.44 -10.86 2.60 -117.94 -0.31 -11.17 16 5 C -0.31 -8.52 9.33 -14.93 -0.14 -8.65 16 6 H 0.10 2.99 7.38 -52.49 -0.39 2.60 16 7 C 0.03 0.81 4.87 -17.47 -0.08 0.72 16 8 N -0.86 -22.32 9.48 55.50 0.53 -21.79 16 9 Si 0.92 20.35 29.60 -169.99 -5.03 15.32 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.43 10.20 7.63 -10.99 -0.08 10.12 16 14 O -0.57 -15.75 16.08 5.55 0.09 -15.66 16 15 C 0.11 2.01 4.24 -5.19 -0.02 1.99 16 16 N -0.61 -10.71 2.50 -181.01 -0.45 -11.17 16 17 C 0.10 1.44 10.19 59.84 0.61 2.05 16 18 C 0.23 4.21 6.55 -83.79 -0.55 3.66 16 19 C -0.20 -3.20 9.21 -39.38 -0.36 -3.56 16 20 C -0.08 -1.11 10.04 -39.61 -0.40 -1.51 16 21 C -0.19 -2.77 10.04 -39.55 -0.40 -3.17 16 22 C -0.07 -1.17 10.04 -39.61 -0.40 -1.56 16 23 C -0.19 -3.46 9.21 -39.38 -0.36 -3.83 16 24 H 0.20 3.26 7.80 -54.09 -0.42 2.83 16 25 H 0.11 2.49 6.44 -51.93 -0.33 2.16 16 26 H 0.06 1.03 6.68 -51.93 -0.35 0.68 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.09 1.35 7.35 -51.93 -0.38 0.97 16 29 H 0.09 1.70 5.56 -51.93 -0.29 1.41 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.07 0.89 6.20 -51.93 -0.32 0.57 16 33 H 0.12 1.62 6.14 -52.49 -0.32 1.29 16 34 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.12 2.34 6.14 -52.49 -0.32 2.02 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -32.00 316.36 -6.84 -38.84 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.37 Total: 7.28 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.06 Total: -6.41 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.23 Total: -44.13 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.09 Total: -15.66 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.00 -6.84 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798801723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.546 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds